Clone Information

BLAST Search Result

Clone Name	bastl44b08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	SAPS3_CHICK (Q5F471) SAPS domain family member 3	58	8e-09
2	SAPS3_HUMAN (Q5H9R7) SAPS domain family member 3 (Sporulation-in...	58	1e-08
3	SAPS3_MOUSE (Q922D4) SAPS domain family member 3	58	1e-08
4	SAPS2_MOUSE (Q8R3Q2) SAPS domain family member 2	57	2e-08
5	SAP3B_XENLA (Q6NRF1) SAPS domain family member 3-B	55	5e-08
6	SAP3A_XENLA (Q6NRI0) SAPS domain family member 3-A	55	7e-08
7	SAPS2_HUMAN (O75170) SAPS domain family member 2	55	9e-08
8	SAPS1_HUMAN (Q9UPN7) SAPS domain family member 1	52	7e-07
9	SAPS1_MOUSE (Q7TSI3) SAPS domain family member 1	50	2e-06
10	IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2	34	0.16
11	SIN3B_HUMAN (O75182) Paired amphipathic helix protein Sin3b (Tra...	32	0.61
12	ETV2_MOUSE (P41163) ETS translocation variant 2 (Ets-related pro...	32	0.79
13	YKY4_CAEEL (Q17963) Hypothetical WD-repeat protein C14B1.4	31	1.0
14	SOX12_HUMAN (O15370) SOX-12 protein (SOX-22 protein)	31	1.0
15	SIN3B_MOUSE (Q62141) Paired amphipathic helix protein Sin3b (Tra...	31	1.0
16	VGLB_BHV1C (P12640) Glycoprotein I precursor (Glycoprotein GVP-6...	31	1.4
17	SCRT1_MOUSE (Q99M85) Transcriptional repressor scratch 1 (Scratc...	31	1.4
18	SCRT1_HUMAN (Q9BWW7) Transcriptional repressor scratch 1 (Scratc...	31	1.4
19	VGLB_BHV1P (P17471) Glycoprotein I precursor (Glycoprotein GVP-6...	31	1.4
20	SHAN3_HUMAN (Q9BYB0) SH3 and multiple ankyrin repeat domains pro...	30	1.8
21	FBRL_GIALA (Q24957) Fibrillarin	30	1.8
22	HTPX_RHILO (Q98ET0) Probable protease htpX homolog (EC 3.4.24.-)	30	1.8
23	MYOB_DICDI (P34092) Myosin IB heavy chain	30	2.3
24	IF2_THEFY (Q47RV1) Translation initiation factor IF-2	30	2.3
25	CCA_AERPE (Q9YB04) CCA-adding enzyme (EC 2.7.7.25) (EC 2.7.7.21)...	30	2.3
26	ARTE_ARATH (Q9FYL3) Protein ARTEMIS, chloroplast precursor (Arab...	30	3.0
27	CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long...	29	3.9
28	TOP3B_MOUSE (Q9Z321) DNA topoisomerase 3-beta-1 (EC 5.99.1.2) (D...	29	5.1
29	RP54_XANCV (P77998) RNA polymerase sigma-54 factor	29	5.1
30	SOX12_MOUSE (Q04890) SOX-12 protein	29	5.1
31	CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor	29	5.1
32	US02_EHV1B (P28964) Gene 68 protein	29	5.1
33	CI066_HUMAN (Q5T8R8) Protein C9orf66	29	5.1
34	MCHR1_MACMU (Q8MJ89) Melanin-concentrating hormone receptor 1 (M...	28	6.7
35	APS1_SCHPO (Q09790) Diphosphoinositol polyphosphate phosphohydro...	28	6.7
36	UL34_EBV (P03185) Protein BFRF1	28	6.7
37	TOP3A_DROME (Q9NG98) DNA topoisomerase 3-alpha (EC 5.99.1.2) (DN...	28	6.7
38	MYSC_ACACA (P10569) Myosin IC heavy chain	28	6.7
39	RS0_NEUCR (Q01291) 40S ribosomal protein S0 (Ribosome-associated...	28	8.8
40	CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor	28	8.8
41	DBP2_YARLI (Q6C4D4) ATP-dependent RNA helicase DBP2 (EC 3.6.1.-)	28	8.8
42	CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Conta...	28	8.8
43	WA22_MYCTU (P0A686) WAG22 antigen precursor	28	8.8
44	WA22_MYCBO (P0A687) WAG22 antigen precursor	28	8.8
45	IF2_COREF (Q8FPA7) Translation initiation factor IF-2	28	8.8
46	CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contain...	28	8.8

>SAPS3_CHICK (Q5F471) SAPS domain family member 3|
          Length = 873

 Score = 58.2 bits (139), Expect = 8e-09
 Identities = 27/73 (36%), Positives = 45/73 (61%)
 Frame = +3

Query: 186 MFWRMTGLSAASPVDTILDKENFTXXXXXXXXXIIQECKALNTRLINFLRDKAQVEQLLR 365
           MFW+   L ++S +DT+L++E+ T         ++QECKA N +LI FL     +E L+ 
Sbjct: 1   MFWKFD-LHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKSECLEDLVS 59

Query: 366 YVVEEVPDDAEKK 404
           +++EE P D ++K
Sbjct: 60  FIIEEPPQDMDEK 72

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>SAPS3_HUMAN (Q5H9R7) SAPS domain family member 3 (Sporulation-induced|
           transcript 4-associated protein SAPL) (Protein
           phosphatase 6 regulatory subunit 3)
          Length = 873

 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 27/73 (36%), Positives = 45/73 (61%)
 Frame = +3

Query: 186 MFWRMTGLSAASPVDTILDKENFTXXXXXXXXXIIQECKALNTRLINFLRDKAQVEQLLR 365
           MFW+   L ++S +DT+L++E+ T         ++QECKA N +LI FL     +E L+ 
Sbjct: 1   MFWKFD-LHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVS 59

Query: 366 YVVEEVPDDAEKK 404
           +++EE P D ++K
Sbjct: 60  FIIEEPPQDMDEK 72

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>SAPS3_MOUSE (Q922D4) SAPS domain family member 3|
          Length = 844

 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 27/73 (36%), Positives = 45/73 (61%)
 Frame = +3

Query: 186 MFWRMTGLSAASPVDTILDKENFTXXXXXXXXXIIQECKALNTRLINFLRDKAQVEQLLR 365
           MFW+   L ++S +DT+L++E+ T         ++QECKA N +LI FL     +E L+ 
Sbjct: 1   MFWKFD-LHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVS 59

Query: 366 YVVEEVPDDAEKK 404
           +++EE P D ++K
Sbjct: 60  FIIEEPPQDMDEK 72

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>SAPS2_MOUSE (Q8R3Q2) SAPS domain family member 2|
          Length = 923

 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 29/76 (38%), Positives = 45/76 (59%)
 Frame = +3

Query: 186 MFWRMTGLSAASPVDTILDKENFTXXXXXXXXXIIQECKALNTRLINFLRDKAQVEQLLR 365
           MFW+   L+  S VD +LDKE+ T         I+QECKA N +L++FL  +  +E+L+ 
Sbjct: 1   MFWKFD-LNTTSHVDKLLDKEHVTLQELMDEDDILQECKAQNQKLLDFLCRQQCMEELVN 59

Query: 366 YVVEEVPDDAEKKRSF 413
            + ++ P D E+K  F
Sbjct: 60  LITQDPPQDMEEKVRF 75

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>SAP3B_XENLA (Q6NRF1) SAPS domain family member 3-B|
          Length = 850

 Score = 55.5 bits (132), Expect = 5e-08
 Identities = 26/73 (35%), Positives = 43/73 (58%)
 Frame = +3

Query: 186 MFWRMTGLSAASPVDTILDKENFTXXXXXXXXXIIQECKALNTRLINFLRDKAQVEQLLR 365
           MFW+   L ++S +DT+L+++  T         I+QECKA N +L+ FL     +E L+ 
Sbjct: 1   MFWKFD-LHSSSHIDTLLERDEVTLKELMDEEDILQECKAQNRKLVEFLLKSECLEDLVT 59

Query: 366 YVVEEVPDDAEKK 404
           ++ EE P D ++K
Sbjct: 60  FITEEPPQDMDEK 72

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>SAP3A_XENLA (Q6NRI0) SAPS domain family member 3-A|
          Length = 852

 Score = 55.1 bits (131), Expect = 7e-08
 Identities = 26/73 (35%), Positives = 43/73 (58%)
 Frame = +3

Query: 186 MFWRMTGLSAASPVDTILDKENFTXXXXXXXXXIIQECKALNTRLINFLRDKAQVEQLLR 365
           MFW+   L ++S +DT+L+++  T         I+QECKA N +L+ FL     +E L+ 
Sbjct: 1   MFWKFD-LHSSSHIDTLLERDEVTLKELMDEEDILQECKAQNRKLVEFLLKAECLEDLVT 59

Query: 366 YVVEEVPDDAEKK 404
           ++ EE P D ++K
Sbjct: 60  FITEEPPQDMDEK 72

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>SAPS2_HUMAN (O75170) SAPS domain family member 2|
          Length = 927

 Score = 54.7 bits (130), Expect = 9e-08
 Identities = 29/76 (38%), Positives = 45/76 (59%)
 Frame = +3

Query: 186 MFWRMTGLSAASPVDTILDKENFTXXXXXXXXXIIQECKALNTRLINFLRDKAQVEQLLR 365
           MFW+   L+  S VD +LDKE+ T         I+QECKA N +L++FL  +  +E+L+ 
Sbjct: 1   MFWKFD-LNTTSHVDKLLDKEHVTLQELMDEDDILQECKAQNQKLLDFLCRQQCMEELVS 59

Query: 366 YVVEEVPDDAEKKRSF 413
            + ++ P D E+K  F
Sbjct: 60  LITQDPPLDMEEKVRF 75

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>SAPS1_HUMAN (Q9UPN7) SAPS domain family member 1|
          Length = 881

 Score = 51.6 bits (122), Expect = 7e-07
 Identities = 22/73 (30%), Positives = 44/73 (60%)
 Frame = +3

Query: 186 MFWRMTGLSAASPVDTILDKENFTXXXXXXXXXIIQECKALNTRLINFLRDKAQVEQLLR 365
           MFW+   L  +S +DT+L++E+ +         ++QECK +N +L++FL     ++ ++ 
Sbjct: 1   MFWKFD-LHTSSHLDTLLEREDLSLPELLDEEDVLQECKVVNRKLLDFLLQPPHLQAMVA 59

Query: 366 YVVEEVPDDAEKK 404
           +V +E PD  E++
Sbjct: 60  WVTQEPPDSGEER 72

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>SAPS1_MOUSE (Q7TSI3) SAPS domain family member 1|
          Length = 856

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 22/73 (30%), Positives = 44/73 (60%)
 Frame = +3

Query: 186 MFWRMTGLSAASPVDTILDKENFTXXXXXXXXXIIQECKALNTRLINFLRDKAQVEQLLR 365
           MFW+   L  +S +DT+L+KE+ +         ++QECK +N +L++FL   + ++ ++ 
Sbjct: 1   MFWKFD-LHTSSHLDTLLEKEDLSLPELLDEEDVLQECKVVNRKLLDFLLQPSHLQAMVA 59

Query: 366 YVVEEVPDDAEKK 404
           +V +E P   E++
Sbjct: 60  WVTQEPPASGEER 72

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>IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2|
          Length = 969

 Score = 33.9 bits (76), Expect = 0.16
 Identities = 26/73 (35%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
 Frame = -1

Query: 223 GEAAERPVMRQNMVAAAVDLG------FPAPGGASPRPNPRESGRRRPDWATGEGGWIGR 62
           G+ A RP        AA   G       P+PG   PRPNP    +R P      GG  GR
Sbjct: 217 GQGAPRPGATPGPRPAAAQGGPRPGGPRPSPGSMPPRPNPGAMPQRTPRPGPSAGGRPGR 276

Query: 61  --GASGSNWDRGG 29
             GA G+    GG
Sbjct: 277 PGGAPGAGRPGGG 289

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>SIN3B_HUMAN (O75182) Paired amphipathic helix protein Sin3b (Transcriptional|
          corepressor Sin3b) (Histone deacetylase complex subunit
          Sin3b)
          Length = 1162

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 88 TGEGGWIGRGASGSNWDRGG*EAHER 11
          +G GG  GRG SG+ W R G   HE+
Sbjct: 11 SGAGGPAGRGLSGARWGRSGSAGHEK 36

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>ETV2_MOUSE (P41163) ETS translocation variant 2 (Ets-related protein 71)|
          Length = 335

 Score = 31.6 bits (70), Expect = 0.79
 Identities = 25/69 (36%), Positives = 27/69 (39%), Gaps = 18/69 (26%)
 Frame = -1

Query: 157 PAPGGASPRP----------NPRESGRRRPDWATGEGGW------IGRGASGSN-WDRG- 32
           PAP G SP P          NP  S    P W+     W         G SG+  WD G 
Sbjct: 105 PAPPGTSPSPFVGFEGATGQNPATSAGGVPSWSHPPAAWSTTSWDCSVGPSGATYWDNGL 164

Query: 31  G*EAHERRK 5
           G EAHE  K
Sbjct: 165 GGEAHEDYK 173

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>YKY4_CAEEL (Q17963) Hypothetical WD-repeat protein C14B1.4|
          Length = 376

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 223 GEAAERPVMRQNMVAAAVDLGFPAPGGASPRPNPRESG 110
           G +A  P    N ++ +   G PAPG ++  PNP  +G
Sbjct: 31  GSSAPAPSTSPNSISPSNPTGTPAPGASAQTPNPNAAG 68

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>SOX12_HUMAN (O15370) SOX-12 protein (SOX-22 protein)|
          Length = 315

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = -1

Query: 202 VMRQNMVAAAVDLGFPAPGGASPRPNPRESGRRRPDWATGEGGWIGRGASG-SNWDRGG* 26
           +++Q    A  D G P PG     P P E G R P W     G I R  +    W +   
Sbjct: 1   MVQQRGARAKRDGGPPPPG-----PGPAEEGAREPGWCKTPSGHIKRPMNAFMVWSQ--- 52

Query: 25  EAHERRK 5
             HERRK
Sbjct: 53  --HERRK 57

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>SIN3B_MOUSE (Q62141) Paired amphipathic helix protein Sin3b (Transcriptional|
          corepressor Sin3b) (Histone deacetylase complex subunit
          Sin3b)
          Length = 1098

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -1

Query: 85 GEGGWIGRGASGSNWDRGG*EAHER 11
          G GG  GRG  GS W R G   HE+
Sbjct: 5  GSGGSAGRGFGGSRWGRSGSGGHEK 29

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>VGLB_BHV1C (P12640) Glycoprotein I precursor (Glycoprotein GVP-6)|
           (Glycoprotein 11A) (Glycoprotein 16) (Glycoprotein G130)
           (Glycoprotein B)
          Length = 932

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 132 RGLAPPGAGNPRSTAAATMFWRMTGLSAASP 224
           RG A PGAG  R+  AA + W    L  A+P
Sbjct: 34  RGPAAPGAGGARAALAAALLWATWALLLAAP 64

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>SCRT1_MOUSE (Q99M85) Transcriptional repressor scratch 1 (Scratch homolog 1|
           zinc finger protein) (Scratch 1) (SCRT) (mScrt)
          Length = 348

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -1

Query: 187 MVAAAV--DLGFPAPGGASPRPNPRESGRRRPDWATGEGGWIGRGASGS 47
           M AAAV  +LG PA  G++P P P      RP+ AT  GG+I   A+ S
Sbjct: 68  MYAAAVRGELG-PAASGSAPPPTP------RPELATAAGGYINGDAAVS 109

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>SCRT1_HUMAN (Q9BWW7) Transcriptional repressor scratch 1 (Scratch homolog 1|
           zinc finger protein) (Scratch 1) (SCRT) (hScrt)
          Length = 348

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -1

Query: 187 MVAAAV--DLGFPAPGGASPRPNPRESGRRRPDWATGEGGWIGRGASGS 47
           M AAAV  +LG PA  G++P P P      RP+ AT  GG+I   A+ S
Sbjct: 68  MYAAAVRGELG-PAAAGSAPPPTP------RPELATAAGGYINGDAAVS 109

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>VGLB_BHV1P (P17471) Glycoprotein I precursor (Glycoprotein GVP-6)|
           (Glycoprotein 11A) (Glycoprotein 16) (Glycoprotein G130)
          Length = 928

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 132 RGLAPPGAGNPRSTAAATMFWRMTGLSAASP 224
           RG A PGAG  R+  AA + W    L  A+P
Sbjct: 34  RGPAAPGAGGARAALAAALLWATWALLLAAP 64

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>SHAN3_HUMAN (Q9BYB0) SH3 and multiple ankyrin repeat domains protein 3 (Shank3)|
           (Proline-rich synapse-associated protein 2) (ProSAP2)
           (Fragment)
          Length = 797

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = -1

Query: 178 AAVDLGFPAPGGAS--PRPNPRESGRRRP--DWATGEGGWIGRGASGSNWDRGG*EAHER 11
           AA+ +G P PGG S    P+P   G R    D+  G+G  +  G  G   DR      ER
Sbjct: 33  AALAVGSPGPGGGSFAREPSPTHRGPRPGGLDYGAGDGPGLAFGGPGPAKDR---RLEER 89

Query: 10  RK 5
           R+
Sbjct: 90  RR 91

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>FBRL_GIALA (Q24957) Fibrillarin|
          Length = 327

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
 Frame = -1

Query: 163 GFPAPGGASPRPNPRESGR-------RRPDWATGEGGWIGRGASGSNWDRGG*EAHERR 8
           G   PGG  P  + R+SGR        RPD+  G+GG  G G    +   GG +  +RR
Sbjct: 12  GRDGPGGRGPGNDRRDSGRSFGDRRPERPDFKRGDGG-RGFGDRRGSGPPGGPDRGDRR 69

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>HTPX_RHILO (Q98ET0) Probable protease htpX homolog (EC 3.4.24.-)|
          Length = 336

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -1

Query: 190 NMVAAAVDLGFPAPGG--ASPRPNPRESGRRRPDWATGE 80
           N +AA  ++     GG  A+PRP PR++G ++P    G+
Sbjct: 268 NRIAALQEMAQQMAGGTQAAPRPTPRQAGEQQPSGPWGQ 306

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>MYOB_DICDI (P34092) Myosin IB heavy chain|
          Length = 1111

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 148  GGASPRPNPRESGRRRPDWATGEGGWIGRGA 56
            GGA P P P++ G  RP  A  +GG   +GA
Sbjct: 975  GGARPMPQPQQGGGARPMGAPQQGGAPQQGA 1005

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>IF2_THEFY (Q47RV1) Translation initiation factor IF-2|
          Length = 955

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 12/48 (25%)
 Frame = -1

Query: 136 PRPNPRES------------GRRRPDWATGEGGWIGRGASGSNWDRGG 29
           PRP PR S            G  RP  ++  GG  GRG  G    RGG
Sbjct: 243 PRPGPRPSPMNMPASRPTPPGGARPSTSSRSGGGRGRGGGGGAGPRGG 290

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>CCA_AERPE (Q9YB04) CCA-adding enzyme (EC 2.7.7.25) (EC 2.7.7.21) (tRNA|
           nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-
           transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT)
          Length = 435

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -1

Query: 160 FPAPGGASPRPNPRESGRRRPDWATGEGGWIGRGASG 50
           +P  G   P P  RE   R  +   GEGGW+  G  G
Sbjct: 330 YPIEGRLGPPPWERERAARFTEKRLGEGGWVWIGDDG 366

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>ARTE_ARATH (Q9FYL3) Protein ARTEMIS, chloroplast precursor (Arabidopsis|
           thaliana envelope membrane integrase) (Ath4)
           (ALBINO3-like protein 1)
          Length = 1013

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = -1

Query: 163 GFPAPGGASPRPNPRESGRRRPDWATGEGGWIGRGASGSNWDRGG*E 23
           G P+PGG S  P     G   P    G GG   +G  G    + G E
Sbjct: 404 GSPSPGGGSGSPPSTGGGSGSPPSTGGGGGSPSKGGGGGKSGKSGEE 450

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>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)|
            (LC collagen)
          Length = 2944

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -1

Query: 163  GFPA-PGGASPRPNPRESGRRRPDWATGEGGWIGRGASGSNWDR 35
            GFP  PGG  P+ +  E+G +      GE G  G   S  N DR
Sbjct: 1901 GFPGVPGGTGPKGDRGETGSKGEQGLPGERGLRGEPGSVPNVDR 1944

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>TOP3B_MOUSE (Q9Z321) DNA topoisomerase 3-beta-1 (EC 5.99.1.2) (DNA|
           topoisomerase III beta-1)
          Length = 862

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 93  QSGRRRPDSRGFGRGLAPPGAGNPR 167
           + G  R   RG GRG  PPG  NPR
Sbjct: 824 RGGPGRRQGRGRGRGRRPPGKPNPR 848

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>RP54_XANCV (P77998) RNA polymerase sigma-54 factor|
          Length = 479

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
 Frame = -1

Query: 178 AAVDLGFPAPGGASPRPNPRES---GRRRPDWATGEGGWIGRGASGSNWDRGG*EAHER 11
           AA D+   +   AS     RE      R  DW+  E  W G G+ GS  D    +A ER
Sbjct: 56  AASDIAVDSSPSASTEQPQREEVAPAERDEDWSQDELQWTGSGSGGSFDDDESGDAAER 114

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>SOX12_MOUSE (Q04890) SOX-12 protein|
          Length = 314

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
 Frame = -1

Query: 202 VMRQNMVAAAVDLGFPAPGGASPRPNPRESGRRRPDWATGEGGWIGRGASG-SNWDRGG* 26
           +++Q    A  D G P PG     P P   G R P W     G I R  +    W +   
Sbjct: 1   MVQQRGARAKRDGGPPPPG-----PGPAAEGAREPGWCKTPSGHIKRPMNAFMVWSQ--- 52

Query: 25  EAHERRK 5
             HERRK
Sbjct: 53  --HERRK 57

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>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -1

Query: 166 LGFPAPGGASPRP-NPRESGRRRPDWATGEGGWIGR-GASG 50
           +GFP P GA+  P  P E G   P  A G  G  G  GA G
Sbjct: 569 MGFPGPKGAAGEPGKPGERGAPGPPGAVGAAGKDGEAGAQG 609

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>US02_EHV1B (P28964) Gene 68 protein|
          Length = 418

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = -1

Query: 208 RPVMRQNMVAAAVDLG----FPAPGGASPRPNPRESGRRRPDWA 89
           RP   + ++ A VD       PAPG   PR  P E G  RP+ A
Sbjct: 210 RPPTVKRVIYAVVDPARLREIPAPGRPLPRRRPSEGGDARPEAA 253

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>CI066_HUMAN (Q5T8R8) Protein C9orf66|
          Length = 295

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 24/61 (39%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
 Frame = -1

Query: 217 AAERPVMRQNMV--AAAVDLGFPAPGGASPRPNPR---ESGR-RRPDWATGEGGWIGRGA 56
           AAE      N+V  +A     FP     SPR   R     GR R P W  G GG  GRG 
Sbjct: 165 AAEHAQPSANLVCRSALETSAFPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGGRGGRGP 224

Query: 55  S 53
           S
Sbjct: 225 S 225

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>MCHR1_MACMU (Q8MJ89) Melanin-concentrating hormone receptor 1 (MCH receptor 1)|
           (MCHR-1) (MCH-R1) (MCH1R) (MCH-1R) (MCHR) (G-protein
           coupled receptor 24) (Fragment)
          Length = 388

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
 Frame = -1

Query: 124 PRESGRR----RPDWATGEGGWIGRGASGSNW 41
           P + GRR    +P W  G   W+   A+G+ W
Sbjct: 4   PGQGGRRWRLPQPAWVEGSSAWLWEPATGTGW 35

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>APS1_SCHPO (Q09790) Diphosphoinositol polyphosphate phosphohydrolase aps1 (EC|
           3.6.1.52) (Diadenosine 5',5'''-P1,P6-hexaphosphate
           hydrolase) (EC 3.6.1.-) (Ap6A hydrolase)
          Length = 210

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
 Frame = -1

Query: 115 SGRRRPDWATGEGGW-----IGRGASGSNWDRGG*EAHERR 8
           S ++ P W   +GGW     + + A    W+ GG   H  R
Sbjct: 62  SAKKHPSWVVPKGGWEADESVQQAALREGWEEGGLVGHITR 102

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>UL34_EBV (P03185) Protein BFRF1|
          Length = 336

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = -1

Query: 169 DLGFPAPGGASPRPNPRESGRRRPDWATGEGGW 71
           D G    GG  PRP    SG        G GGW
Sbjct: 199 DTGARVTGGGGPRPGVTHSGCLGDSHVRGRGGW 231

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>TOP3A_DROME (Q9NG98) DNA topoisomerase 3-alpha (EC 5.99.1.2) (DNA topoisomerase|
           III alpha)
          Length = 1250

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 17/43 (39%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
 Frame = -1

Query: 148 GGASPRPNPRESGRRRPDWATGEGGWI---GRGASGSNWDRGG 29
           GG  P P P   G  R     G GGW    G G SG     GG
Sbjct: 771 GGGGPGPGPGGGGSGR---GAGSGGWSSGPGGGGSGGGGGSGG 810

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>MYSC_ACACA (P10569) Myosin IC heavy chain|
          Length = 1168

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 18/39 (46%), Positives = 20/39 (51%)
 Frame = -1

Query: 163  GFPAPGGASPRPNPRESGRRRPDWATGEGGWIGRGASGS 47
            G PAPGGA+PR      GR  P    G GG  G G  G+
Sbjct: 1099 GMPAPGGAAPR------GRGAP--PPGAGGPPGGGRGGA 1129

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>RS0_NEUCR (Q01291) 40S ribosomal protein S0 (Ribosome-associated protein 1)|
          Length = 290

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = -1

Query: 178 AAVDLGFPAPGG--ASPRPNPRESGRRRPDWATGEGGWIGRGASGSNWD 38
           AA++ GFPA G   A+P   P          ATGE      GA+  NWD
Sbjct: 232 AAIESGFPATGDWEAAPAGFP----------ATGEWSDAAPGAAAPNWD 270

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>CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor|
          Length = 1745

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -1

Query: 169  DLGFPAPGGASPRPN-PRESGRRRPDWATGEGGWIG-RGASG 50
            D+G P P GAS  P  P   G+R P    G  G  G +GA G
Sbjct: 1290 DVGGPGPPGASGEPGAPGPPGKRGPSGHMGREGREGEKGAKG 1331

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>DBP2_YARLI (Q6C4D4) ATP-dependent RNA helicase DBP2 (EC 3.6.1.-)|
          Length = 552

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -1

Query: 85  GEGGWIGRGASGSNWDRGG 29
           G GGW GRG  G    RGG
Sbjct: 502 GRGGWGGRGGRGGRGGRGG 520

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>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:|
           Chondrocalcin]
          Length = 1418

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 11/57 (19%)
 Frame = -1

Query: 169 DLGFPAPGGASPRPNPR----------ESGRRRPDWATGEGGWIGR-GASGSNWDRG 32
           D G P P G S  P P+            G + P  ATG  G  GR G  GSN + G
Sbjct: 790 DAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPG 846

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>WA22_MYCTU (P0A686) WAG22 antigen precursor|
          Length = 914

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
 Frame = -1

Query: 217 AAERPVMRQNMVAAAVDLGFPAPG-GASPRPNPRESGRRRPDWATGEGGWIGRGASGSNW 41
           AA  P++           G P  G GA+  P    +G     W  G GG  G GA G+N 
Sbjct: 93  AAVTPLLNSINAPVLAATGRPLIGNGANGAPGTGANGGDA-GWLIGNGGAGGSGAKGANG 151

Query: 40  DRGG 29
             GG
Sbjct: 152 GAGG 155

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>WA22_MYCBO (P0A687) WAG22 antigen precursor|
          Length = 914

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
 Frame = -1

Query: 217 AAERPVMRQNMVAAAVDLGFPAPG-GASPRPNPRESGRRRPDWATGEGGWIGRGASGSNW 41
           AA  P++           G P  G GA+  P    +G     W  G GG  G GA G+N 
Sbjct: 93  AAVTPLLNSINAPVLAATGRPLIGNGANGAPGTGANGGDA-GWLIGNGGAGGSGAKGANG 151

Query: 40  DRGG 29
             GG
Sbjct: 152 GAGG 155

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>IF2_COREF (Q8FPA7) Translation initiation factor IF-2|
          Length = 964

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
 Frame = -1

Query: 175 AVDLGFPAPGGASPRP--NPRESGRRRPDWATGEG 77
           A D   P PGG  PRP   PR  G  RP      G
Sbjct: 195 AADRPGPRPGGGGPRPGGGPRPGGAPRPQGGQRSG 229

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>CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contains:|
           Chondrocalcin]
          Length = 1419

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 11/57 (19%)
 Frame = -1

Query: 169 DLGFPAPGGASPRPNPR----------ESGRRRPDWATGEGGWIGR-GASGSNWDRG 32
           D G P P G S  P P+            G + P  ATG  G  GR G  GSN + G
Sbjct: 791 DAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPG 847


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,176,609
Number of Sequences: 219361
Number of extensions: 871194
Number of successful extensions: 3705
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 3350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3689
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result