ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl44b02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_188661.1| Oryza sativa (japonica cultivar-group), Ozsa826... 84 4e-13
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 84 4e-13
3dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic D... 84 4e-13
4dbj|AK064696.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 4e-13
5ref|NM_197274.1| Oryza sativa (japonica cultivar-group) hypothet... 44 0.35
6gb|AC090870.13| Oryza sativa chromosome 10 BAC OSJNBb0015K05 gen... 44 0.35
7gb|AC091122.10| Oryza sativa chromosome 10 BAC OSJNBb0091N21 gen... 44 0.35
8dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.35
9dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 44 0.35
10gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.35
11ref|XM_475190.1| Oryza sativa (japonica cultivar-group), predic... 42 1.4
12dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
13dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
14gb|AF123610.1|AF123610 Triticum aestivum clone RED1-TA NADPH-cyt... 42 1.4
15gb|L47709.1|BACYPIA Bacillus subtilis clone YAC15-6B ypiABF gene... 42 1.4
16dbj|AP004850.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
17dbj|AK063704.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
18emb|Z99115.2|BSUB0012 Bacillus subtilis complete genome (section... 42 1.4
19gb|AC105258.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
20ref|XM_482765.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.5
21ref|XM_480321.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.5
22ref|XM_475598.1| Oryza sativa (japonica cultivar-group), predic... 40 5.5
23ref|XM_467596.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.5
24ref|XM_466302.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.5
25gb|BT017810.1| Zea mays clone EL01N0507A04.c mRNA sequence 40 5.5
26gb|AY725781.1| Oncometopia nigricans putative rhodopsin mRNA, co... 40 5.5
27gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 5.5
28gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 40 5.5
29gb|AC104277.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
30gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 5.5
31emb|AJ296704.1|PAB296704 Picea abies ATC microsatellite DNA, clo... 40 5.5
32emb|AL683807.22| Human DNA sequence from clone RP13-297E16 on ch... 40 5.5
33emb|AL136221.38| Human DNA sequence from clone RP11-391H12 on ch... 40 5.5
34ref|XM_775656.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 5.5
35ref|XM_775775.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 5.5
36emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 5.5
37emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 5.5
38gb|DQ442996.1| Triticum aestivum phosphomannomutase mRNA, comple... 40 5.5
39gb|AF533768.1| Cercopithecine herpesvirus 1 strain E2490, comple... 40 5.5
40gb|AC124591.4| Mus musculus BAC clone RP23-136G17 from chromosom... 40 5.5
41gb|CP000133.1| Rhizobium etli CFN 42, complete genome 40 5.5
42gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 5.5
43gb|AY082963.1| Hordeum vulgare clone HV_CEb0009E08f CONSTANS-lik... 40 5.5
44dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
45dbj|AP006068.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
46dbj|AP005164.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
47dbj|AP005751.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
48dbj|AP005483.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
49dbj|AP004586.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
50dbj|AK106955.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
51ref|NM_207722.1| Eremothecium gossypii AAL173Cp (AAL173C), mRNA 40 5.5
52dbj|AK068282.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
53dbj|AK064113.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
54gb|AY103805.1| Zea mays PCO119314 mRNA sequence 40 5.5
55gb|BC110496.1| Homo sapiens DNA segment on chromosome X and Y (u... 40 5.5
56gb|BC110497.1| Homo sapiens DNA segment on chromosome X and Y (u... 40 5.5
57gb|BC093401.1| Rattus norvegicus cathepsin W, mRNA (cDNA clone M... 40 5.5
58gb|AC092203.16| Mus musculus strain C57BL/6J chromosome 3 clone ... 40 5.5
59gb|BC028151.1| Homo sapiens DNA segment on chromosome X and Y (u... 40 5.5
60gb|BC016935.1| Homo sapiens DNA segment on chromosome X and Y (u... 40 5.5
61gb|AC162945.5| Mus musculus BAC clone RP23-60O19 from chromosome... 40 5.5
62gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 5.5
63ref|NM_001024242.1| Rattus norvegicus cathepsin W (Ctsw), mRNA 40 5.5
64ref|NM_005088.2| Homo sapiens DNA segment on chromosome X and Y ... 40 5.5
65gb|BC015800.1| Homo sapiens cDNA clone IMAGE:3915791, containing... 40 5.5
66gb|AC114897.43| Mus musculus strain C57BL/6J clone rp23-158e11 m... 40 5.5
67gb|L03426.1|HUMXE7A Human XE7 mRNA, complete alternate coding re... 40 5.5
68gb|M99578.1|HUMLSPRO Human lymphocyte surface protein exons 1-5,... 40 5.5 
>ref|NM_188661.1| Oryza sativa (japonica cultivar-group), Ozsa8264 predicted mRNA
          Length = 2952

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 45/46 (97%)
 Strand = Plus / Plus

                                                         
Query: 308 ctccgtccatttcaagaacctcctccgccgccgctggcccaagccc 353
           ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 189 ctccgtccagttcaagaacctcctccgccgccgctggcccaagccc 234



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Plus

                                                                       
Query: 120 atggaggtgccgccggagatgctcgacaccctggcgggctggttcgcgcagaccctctcc 179
           ||||||||| ||||||||| ||||||||||||| |||| |||||||||||| | ||||||
Sbjct: 1   atggaggtggcgccggagacgctcgacaccctgtcggggtggttcgcgcagtcgctctcc 60

             
Query: 180 cc 181
           ||
Sbjct: 61  cc 62



 Score = 44.1 bits (22), Expect = 0.35
 Identities = 41/46 (89%), Gaps = 1/46 (2%)
 Strand = Plus / Plus

                                                         
Query: 365 cgacgacggggaccacctcccgccc-acgactgcgtcatcatcaag 409
           ||||||||  |||||||||||||||  |||||||| ||||||||||
Sbjct: 255 cgacgacgccgaccacctcccgccctccgactgcgccatcatcaag 300
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 45/46 (97%)
 Strand = Plus / Minus

                                                             
Query: 308     ctccgtccatttcaagaacctcctccgccgccgctggcccaagccc 353
               ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 7481500 ctccgtccagttcaagaacctcctccgccgccgctggcccaagccc 7481455



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 57/63 (90%)
 Strand = Plus / Minus

                                                                           
Query: 119     aatggaggtgccgccggagatgctcgacaccctggcgggctggttcgcgcagaccctctc 178
               |||||||||| ||||||||| ||||||||||||| |||| |||||||||||| | |||||
Sbjct: 7481689 aatggaggtggcgccggagacgctcgacaccctgtcggggtggttcgcgcagtcgctctc 7481630

                  
Query: 179     ccc 181
               |||
Sbjct: 7481629 ccc 7481627



 Score = 44.1 bits (22), Expect = 0.35
 Identities = 41/46 (89%), Gaps = 1/46 (2%)
 Strand = Plus / Minus

                                                             
Query: 365     cgacgacggggaccacctcccgccc-acgactgcgtcatcatcaag 409
               ||||||||  |||||||||||||||  |||||||| ||||||||||
Sbjct: 7481434 cgacgacgccgaccacctcccgccctccgactgcgccatcatcaag 7481389
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>dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0708G02
          Length = 168976

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 45/46 (97%)
 Strand = Plus / Minus

                                                           
Query: 308   ctccgtccatttcaagaacctcctccgccgccgctggcccaagccc 353
             ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 30292 ctccgtccagttcaagaacctcctccgccgccgctggcccaagccc 30247



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 57/63 (90%)
 Strand = Plus / Minus

                                                                         
Query: 119   aatggaggtgccgccggagatgctcgacaccctggcgggctggttcgcgcagaccctctc 178
             |||||||||| ||||||||| ||||||||||||| |||| |||||||||||| | |||||
Sbjct: 30481 aatggaggtggcgccggagacgctcgacaccctgtcggggtggttcgcgcagtcgctctc 30422

                
Query: 179   ccc 181
             |||
Sbjct: 30421 ccc 30419



 Score = 44.1 bits (22), Expect = 0.35
 Identities = 41/46 (89%), Gaps = 1/46 (2%)
 Strand = Plus / Minus

                                                           
Query: 365   cgacgacggggaccacctcccgccc-acgactgcgtcatcatcaag 409
             ||||||||  |||||||||||||||  |||||||| ||||||||||
Sbjct: 30226 cgacgacgccgaccacctcccgccctccgactgcgccatcatcaag 30181
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>dbj|AK064696.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-F11, full
           insert sequence
          Length = 1754

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 45/46 (97%)
 Strand = Plus / Plus

                                                         
Query: 308 ctccgtccatttcaagaacctcctccgccgccgctggcccaagccc 353
           ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 315 ctccgtccagttcaagaacctcctccgccgccgctggcccaagccc 360



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                       
Query: 119 aatggaggtgccgccggagatgctcgacaccctggcgggctggttcgcgcagaccctctc 178
           |||||||||| ||||||||| ||||||||||||| |||| |||||||||||| | |||||
Sbjct: 126 aatggaggtggcgccggagacgctcgacaccctgtcggggtggttcgcgcagtcgctctc 185

              
Query: 179 ccc 181
           |||
Sbjct: 186 ccc 188



 Score = 44.1 bits (22), Expect = 0.35
 Identities = 41/46 (89%), Gaps = 1/46 (2%)
 Strand = Plus / Plus

                                                         
Query: 365 cgacgacggggaccacctcccgccc-acgactgcgtcatcatcaag 409
           ||||||||  |||||||||||||||  |||||||| ||||||||||
Sbjct: 381 cgacgacgccgaccacctcccgccctccgactgcgccatcatcaag 426
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>ref|NM_197274.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBb0015K05.5), mRNA
          Length = 942

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 352 ccgccgacgacgccgacgacggggac 377
           ||||||||||||||||||||| ||||
Sbjct: 37  ccgccgacgacgccgacgacgaggac 12
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>gb|AC090870.13| Oryza sativa chromosome 10 BAC OSJNBb0015K05 genomic sequence, complete
             sequence
          Length = 123292

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 352   ccgccgacgacgccgacgacggggac 377
             ||||||||||||||||||||| ||||
Sbjct: 38954 ccgccgacgacgccgacgacgaggac 38929
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>gb|AC091122.10| Oryza sativa chromosome 10 BAC OSJNBb0091N21 genomic sequence, complete
              sequence
          Length = 151991

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 352    ccgccgacgacgccgacgacggggac 377
              ||||||||||||||||||||| ||||
Sbjct: 122601 ccgccgacgacgccgacgacgaggac 122576
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 352      ccgccgacgacgccgacgacggggac 377
                ||||||||||||||||||||| ||||
Sbjct: 18956087 ccgccgacgacgccgacgacgaggac 18956112
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 344     gcccaagcccgccgacgacgccgacg 369
               ||||||||||||||||| ||||||||
Sbjct: 8157056 gcccaagcccgccgacgccgccgacg 8157081



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 353     cgccgacgacgccgacgacg 372
               ||||||||||||||||||||
Sbjct: 1826445 cgccgacgacgccgacgacg 1826426



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 353     cgccgacgacgccgacgacg 372
               ||||||||||||||||||||
Sbjct: 1826436 cgccgacgacgccgacgacg 1826417
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 352      ccgccgacgacgccgacgacggggac 377
                ||||||||||||||||||||| ||||
Sbjct: 18967317 ccgccgacgacgccgacgacgaggac 18967342
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>ref|XM_475190.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1158

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 356 cgacgacgccgacgacggggaccacctcccgcc 388
           ||||||||||| ||||||| || ||||||||||
Sbjct: 60  cgacgacgccggcgacgggaacgacctcccgcc 28
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                 
Query: 356      cgacgacgccgacgacggggaccacctcccgcc 388
                ||||||||||| ||||||| || ||||||||||
Sbjct: 18798470 cgacgacgccggcgacgggaacgacctcccgcc 18798502



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 354     gccgacgacgccgacgacgg 373
               ||||||||||||||||||||
Sbjct: 2422083 gccgacgacgccgacgacgg 2422064
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 351      cccgccgacgacgccgacgac 371
                |||||||||||||||||||||
Sbjct: 15826220 cccgccgacgacgccgacgac 15826200



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 326      cctcctccgccgccgctggc 345
                ||||||||||||||||||||
Sbjct: 30366096 cctcctccgccgccgctggc 30366115



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 351      cccgccgacgacgccgacgacggg 374
                ||||||||||||| ||||||||||
Sbjct: 21582523 cccgccgacgacggcgacgacggg 21582546
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>gb|AF123610.1|AF123610 Triticum aestivum clone RED1-TA NADPH-cytochrome P450 reductase
           mRNA, partial cds
          Length = 2333

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 353 cgccgacgacgccgacgacgg 373
           |||||||||||||||||||||
Sbjct: 106 cgccgacgacgccgacgacgg 126
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>gb|L47709.1|BACYPIA Bacillus subtilis clone YAC15-6B ypiABF genes, qcrABC genes,
            ypjABCDEFGHI genes, birA gene, panBCD genes, dinG gene,
            ypmB gene, aspB gene, asnS gene, dnaD gene, nth gene and
            ypoC gene, complete cds
          Length = 23775

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 308  ctccgtccatttcaagaacct 328
            |||||||||||||||||||||
Sbjct: 1563 ctccgtccatttcaagaacct 1543
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>dbj|AP004850.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1342_D02
          Length = 125460

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 351   cccgccgacgacgccgacgac 371
             |||||||||||||||||||||
Sbjct: 84160 cccgccgacgacgccgacgac 84140
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>dbj|AK063704.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-G12, full
           insert sequence
          Length = 665

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 351 cccgccgacgacgccgacgac 371
           |||||||||||||||||||||
Sbjct: 233 cccgccgacgacgccgacgac 253
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>emb|Z99115.2|BSUB0012 Bacillus subtilis complete genome (section 12 of 21): from 2207806 to
              2409180
          Length = 201375

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 308    ctccgtccatttcaagaacct 328
              |||||||||||||||||||||
Sbjct: 157794 ctccgtccatttcaagaacct 157814
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>gb|AC105258.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1057_G07,
             complete sequence
          Length = 71145

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 356   cgacgacgccgacgacggggaccacctcccgcc 388
             ||||||||||| ||||||| || ||||||||||
Sbjct: 20836 cgacgacgccggcgacgggaacgacctcccgcc 20868
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>ref|XM_482765.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1848

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 353 cgccgacgacgccgacgacg 372
           ||||||||||||||||||||
Sbjct: 312 cgccgacgacgccgacgacg 293
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>ref|XM_480321.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 792

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 352 ccgccgacgacgccgacgacgggg 375
           |||||||||||||||||| |||||
Sbjct: 341 ccgccgacgacgccgacgccgggg 364
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>ref|XM_475598.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 231

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 354 gccgacgacgccgacgacgg 373
           ||||||||||||||||||||
Sbjct: 48  gccgacgacgccgacgacgg 67
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>ref|XM_467596.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1248

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 326 cctcctccgccgccgctggc 345
           ||||||||||||||||||||
Sbjct: 191 cctcctccgccgccgctggc 172
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>ref|XM_466302.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 750

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 351 cccgccgacgacgccgacgacggg 374
           ||||||||||||| ||||||||||
Sbjct: 135 cccgccgacgacggcgacgacggg 112
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>gb|BT017810.1| Zea mays clone EL01N0507A04.c mRNA sequence
          Length = 1011

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 122 ggaggtgccgccggagatgc 141
           ||||||||||||||||||||
Sbjct: 239 ggaggtgccgccggagatgc 258
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>gb|AY725781.1| Oncometopia nigricans putative rhodopsin mRNA, complete cds
          Length = 1146

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 124 aggtgccgccggagatgctc 143
           ||||||||||||||||||||
Sbjct: 83  aggtgccgccggagatgctc 102
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 353     cgccgacgacgccgacgacg 372
               ||||||||||||||||||||
Sbjct: 1769437 cgccgacgacgccgacgacg 1769456
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 353    cgccgacgacgccgacgacg 372
              ||||||||||||||||||||
Sbjct: 482585 cgccgacgacgccgacgacg 482566
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>gb|AC104277.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1264_A04,
             complete sequence
          Length = 133271

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 354   gccgacgacgccgacgacgg 373
             ||||||||||||||||||||
Sbjct: 97683 gccgacgacgccgacgacgg 97664
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 353     cgccgacgacgccgacgacg 372
               ||||||||||||||||||||
Sbjct: 3014919 cgccgacgacgccgacgacg 3014938
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>emb|AJ296704.1|PAB296704 Picea abies ATC microsatellite DNA, clone EATC1F07B
          Length = 317

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 353 cgccgacgacgccgacgacg 372
           ||||||||||||||||||||
Sbjct: 193 cgccgacgacgccgacgacg 174
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>emb|AL683807.22| Human DNA sequence from clone RP13-297E16 on chromosome X Contains
            the DXYS155E gene for DNA segment on chromosome X and Y
            (unique) 155 expressed sequence (XE7, XE7Y), the ASMT
            gene for acetylserotonin O-methyltransferase (ASMTY,
            HIOMT, HIOMTY), three novel genes and three CpG islands,
            complete sequence
          Length = 189825

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 332  ccgccgccgctggcccaagc 351
            ||||||||||||||||||||
Sbjct: 9198 ccgccgccgctggcccaagc 9179
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>emb|AL136221.38| Human DNA sequence from clone RP11-391H12 on chromosome 13 Contains the
              CUL4A gene for cullin 4A, the LAMP1 gene for
              lysosomal-associated membrane protein 1, the GRTP1 gene for
              growth hormone regulated TBC protein 1, a novel gene, the
              5' end of a novel gene (FLJ11305) an LDHB (lactate
              dehydrogenase B) pseudogene and six CpG islands, complete
              sequence
          Length = 188896

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 4      acccccttcccctcttctcc 23
              ||||||||||||||||||||
Sbjct: 163051 acccccttcccctcttctcc 163070
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>ref|XM_775656.1| PREDICTED: Strongylocentrotus purpuratus similar to
            sporulation-induced transcript 4-associated protein
            (LOC575241), mRNA
          Length = 4368

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 353  cgccgacgacgccgacgacg 372
            ||||||||||||||||||||
Sbjct: 3840 cgccgacgacgccgacgacg 3859



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 353  cgccgacgacgccgacgacg 372
            ||||||||||||||||||||
Sbjct: 3831 cgccgacgacgccgacgacg 3850
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>ref|XM_775775.1| PREDICTED: Strongylocentrotus purpuratus similar to CG14853-PB,
            isoform B (LOC575371), partial mRNA
          Length = 1779

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 353  cgccgacgacgccgacgacg 372
            ||||||||||||||||||||
Sbjct: 1692 cgccgacgacgccgacgacg 1711
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 358    acgacgccgacgacggggac 377
              ||||||||||||||||||||
Sbjct: 565961 acgacgccgacgacggggac 565980
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 353     cgccgacgacgccgacgacg 372
               ||||||||||||||||||||
Sbjct: 2744891 cgccgacgacgccgacgacg 2744910
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>gb|DQ442996.1| Triticum aestivum phosphomannomutase mRNA, complete cds
          Length = 750

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 122 ggaggtgccgccggagatgctcga 145
           ||||||| ||||||||||||||||
Sbjct: 75  ggaggtgacgccggagatgctcga 98
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>gb|AF533768.1| Cercopithecine herpesvirus 1 strain E2490, complete genome
          Length = 156789

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 349    agcccgccgacgacgccgacgacgggga 376
              |||||| |||||||| ||||||||||||
Sbjct: 151219 agcccgacgacgacgacgacgacgggga 151246



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 349    agcccgccgacgacgccgacgacgggga 376
              |||||| |||||||| ||||||||||||
Sbjct: 131205 agcccgacgacgacgacgacgacgggga 131178
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>gb|AC124591.4| Mus musculus BAC clone RP23-136G17 from chromosome 8, complete sequence
          Length = 201039

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     cccttcccctcttctccacg 26
             ||||||||||||||||||||
Sbjct: 98543 cccttcccctcttctccacg 98562
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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 384     ccgcccacgactgcgtcatc 403
               ||||||||||||||||||||
Sbjct: 2665712 ccgcccacgactgcgtcatc 2665731
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>gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome I,
             complete sequence
          Length = 691920

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 353   cgccgacgacgccgacgacg 372
             ||||||||||||||||||||
Sbjct: 38573 cgccgacgacgccgacgacg 38592
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>gb|AY082963.1| Hordeum vulgare clone HV_CEb0009E08f CONSTANS-like protein CO7
           (CO7) mRNA, partial cds
          Length = 1056

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 346 ccaagcccgccgacgacgccgacg 369
           |||||| |||||||||||||||||
Sbjct: 627 ccaagcgcgccgacgacgccgacg 650
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 353      cgccgacgacgccgacgacg 372
                ||||||||||||||||||||
Sbjct: 22411066 cgccgacgacgccgacgacg 22411085



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 352     ccgccgacgacgccgacgacgggg 375
               |||||||||||||||||| |||||
Sbjct: 4311861 ccgccgacgacgccgacgccgggg 4311838
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>dbj|AP006068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0020D05
          Length = 158760

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 351   cccgccgacgacgccgacgacggg 374
             ||||||||||||| ||||||||||
Sbjct: 71473 cccgccgacgacggcgacgacggg 71496
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>dbj|AP005164.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0054L03
          Length = 183623

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 352   ccgccgacgacgccgacgacgggg 375
             |||||||||||||||||| |||||
Sbjct: 74655 ccgccgacgacgccgacgccgggg 74632
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>dbj|AP005751.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0072H09
          Length = 160541

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 326   cctcctccgccgccgctggc 345
             ||||||||||||||||||||
Sbjct: 46956 cctcctccgccgccgctggc 46975
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>dbj|AP005483.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:B1144B06
          Length = 133689

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 353    cgccgacgacgccgacgacg 372
              ||||||||||||||||||||
Sbjct: 108049 cgccgacgacgccgacgacg 108068
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>dbj|AP004586.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0493A04
          Length = 149367

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 353  cgccgacgacgccgacgacg 372
            ||||||||||||||||||||
Sbjct: 5994 cgccgacgacgccgacgacg 6013
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>dbj|AK106955.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-E08, full
           insert sequence
          Length = 1848

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 353 cgccgacgacgccgacgacg 372
           ||||||||||||||||||||
Sbjct: 312 cgccgacgacgccgacgacg 293
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>ref|NM_207722.1| Eremothecium gossypii AAL173Cp (AAL173C), mRNA
          Length = 1263

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 353 cgccgacgacgccgacgacg 372
           ||||||||||||||||||||
Sbjct: 955 cgccgacgacgccgacgacg 936
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>dbj|AK068282.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013142A16, full
           insert sequence
          Length = 750

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 351 cccgccgacgacgccgacgacggg 374
           ||||||||||||| ||||||||||
Sbjct: 135 cccgccgacgacggcgacgacggg 112
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>dbj|AK064113.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-H08, full
           insert sequence
          Length = 449

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 354 gccgacgacgccgacgacgg 373
           ||||||||||||||||||||
Sbjct: 158 gccgacgacgccgacgacgg 177
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>gb|AY103805.1| Zea mays PCO119314 mRNA sequence
          Length = 1791

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 4  acccccttcccctcttctcc 23
          ||||||||||||||||||||
Sbjct: 39 acccccttcccctcttctcc 58
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>gb|BC110496.1| Homo sapiens DNA segment on chromosome X and Y (unique) 155
           expressed sequence, isoform 1, mRNA (cDNA clone
           MGC:125365 IMAGE:40007662), complete cds
          Length = 2402

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 332 ccgccgccgctggcccaagc 351
           ||||||||||||||||||||
Sbjct: 144 ccgccgccgctggcccaagc 125
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>gb|BC110497.1| Homo sapiens DNA segment on chromosome X and Y (unique) 155
           expressed sequence, isoform 1, mRNA (cDNA clone
           MGC:125366 IMAGE:40007663), complete cds
          Length = 2402

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 332 ccgccgccgctggcccaagc 351
           ||||||||||||||||||||
Sbjct: 144 ccgccgccgctggcccaagc 125
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>gb|BC093401.1| Rattus norvegicus cathepsin W, mRNA (cDNA clone MGC:112764
           IMAGE:7389584), complete cds
          Length = 1272

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 48  acctcgccgctccaccccct 67
           ||||||||||||||||||||
Sbjct: 947 acctcgccgctccaccccct 966
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>gb|AC092203.16| Mus musculus strain C57BL/6J chromosome 3 clone rp23-422n18, complete
             sequence
          Length = 188880

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 324   aacctcctccgccgccgctg 343
             ||||||||||||||||||||
Sbjct: 78410 aacctcctccgccgccgctg 78429
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>gb|BC028151.1| Homo sapiens DNA segment on chromosome X and Y (unique) 155
           expressed sequence, isoform 1, mRNA (cDNA clone
           MGC:39904 IMAGE:5217247), complete cds
          Length = 2187

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 332 ccgccgccgctggcccaagc 351
           ||||||||||||||||||||
Sbjct: 114 ccgccgccgctggcccaagc 95
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>gb|BC016935.1| Homo sapiens DNA segment on chromosome X and Y (unique) 155
           expressed sequence, isoform 1, mRNA (cDNA clone
           IMAGE:4430810), containing frame-shift errors
          Length = 1073

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 332 ccgccgccgctggcccaagc 351
           ||||||||||||||||||||
Sbjct: 146 ccgccgccgctggcccaagc 127
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>gb|AC162945.5| Mus musculus BAC clone RP23-60O19 from chromosome 8, complete sequence
          Length = 221852

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 7      cccttcccctcttctccacg 26
              ||||||||||||||||||||
Sbjct: 196548 cccttcccctcttctccacg 196567
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 353     cgccgacgacgccgacgacg 372
               ||||||||||||||||||||
Sbjct: 3895743 cgccgacgacgccgacgacg 3895724
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>ref|NM_001024242.1| Rattus norvegicus cathepsin W (Ctsw), mRNA
          Length = 1272

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 48  acctcgccgctccaccccct 67
           ||||||||||||||||||||
Sbjct: 947 acctcgccgctccaccccct 966
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>ref|NM_005088.2| Homo sapiens DNA segment on chromosome X and Y (unique) 155
           expressed sequence, isoform 1 (DXYS155E), mRNA
          Length = 3227

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 332 ccgccgccgctggcccaagc 351
           ||||||||||||||||||||
Sbjct: 146 ccgccgccgctggcccaagc 127
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>gb|BC015800.1| Homo sapiens cDNA clone IMAGE:3915791, containing frame-shift
           errors
          Length = 3127

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 332 ccgccgccgctggcccaagc 351
           ||||||||||||||||||||
Sbjct: 58  ccgccgccgctggcccaagc 39
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>gb|AC114897.43| Mus musculus strain C57BL/6J clone rp23-158e11 map 8, complete sequence
          Length = 202175

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     cccttcccctcttctccacg 26
             ||||||||||||||||||||
Sbjct: 98783 cccttcccctcttctccacg 98802
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>gb|L03426.1|HUMXE7A Human XE7 mRNA, complete alternate coding regions
          Length = 3233

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 332 ccgccgccgctggcccaagc 351
           ||||||||||||||||||||
Sbjct: 116 ccgccgccgctggcccaagc 97
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>gb|M99578.1|HUMLSPRO Human lymphocyte surface protein exons 1-5, complete cds
          Length = 2622

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 332 ccgccgccgctggcccaagc 351
           ||||||||||||||||||||
Sbjct: 119 ccgccgccgctggcccaagc 100


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,301,283
Number of Sequences: 3902068
Number of extensions: 2301283
Number of successful extensions: 62993
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61212
Number of HSP's gapped (non-prelim): 1781
length of query: 413
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 391
effective length of database: 17,147,199,772
effective search space: 6704555110852
effective search space used: 6704555110852
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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