>ref|NM_187597.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2583

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 43/45 (95%)
 Strand = Plus / Plus

                                                        
Query: 215 tcctactccaacctgcttgacctggccacgggcgcggcggaccag 259
           ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 13  tcctactccaacctgctggacctggccaccggcgcggcggaccag 57



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 56/66 (84%)
 Strand = Plus / Plus

                                                                       
Query: 308 gtggtcaccacgccggggctcatggaggactcccccgcgtccccctccacgccgtccccg 367
           ||||| |||||  |||||||||| || ||||||||   ||||||||| ||||||||||||
Sbjct: 106 gtggtgaccaccgcggggctcatcgacgactccccgctgtccccctcgacgccgtccccg 165

                 
Query: 368 gcgccg 373
            |||||
Sbjct: 166 tcgccg 171

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 43/45 (95%)
 Strand = Plus / Minus

                                                            
Query: 215     tcctactccaacctgcttgacctggccacgggcgcggcggaccag 259
               ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 6490712 tcctactccaacctgctggacctggccaccggcgcggcggaccag 6490668



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                           
Query: 308     gtggtcaccacgccggggctcatggaggactcccccgcgtccccctccacgccgtccccg 367
               ||||| |||||  |||||||||| || ||||||||   ||||||||| ||||||||||||
Sbjct: 6490619 gtggtgaccaccgcggggctcatcgacgactccccgctgtccccctcgacgccgtccccg 6490560

                     
Query: 368     gcgccg 373
                |||||
Sbjct: 6490559 tcgccg 6490554

>gb|AC107226.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0081P02, complete sequence
          Length = 162425

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 43/45 (95%)
 Strand = Plus / Minus

                                                          
Query: 215   tcctactccaacctgcttgacctggccacgggcgcggcggaccag 259
             ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 33474 tcctactccaacctgctggacctggccaccggcgcggcggaccag 33430



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                         
Query: 308   gtggtcaccacgccggggctcatggaggactcccccgcgtccccctccacgccgtccccg 367
             ||||| |||||  |||||||||| || ||||||||   ||||||||| ||||||||||||
Sbjct: 33381 gtggtgaccaccgcggggctcatcgacgactccccgctgtccccctcgacgccgtccccg 33322

                   
Query: 368   gcgccg 373
              |||||
Sbjct: 33321 tcgccg 33316

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 43/45 (95%)
 Strand = Plus / Minus

                                                            
Query: 215     tcctactccaacctgcttgacctggccacgggcgcggcggaccag 259
               ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 6489925 tcctactccaacctgctggacctggccaccggcgcggcggaccag 6489881



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                           
Query: 308     gtggtcaccacgccggggctcatggaggactcccccgcgtccccctccacgccgtccccg 367
               ||||| |||||  |||||||||| || ||||||||   ||||||||| ||||||||||||
Sbjct: 6489832 gtggtgaccaccgcggggctcatcgacgactccccgctgtccccctcgacgccgtccccg 6489773

                     
Query: 368     gcgccg 373
                |||||
Sbjct: 6489772 tcgccg 6489767

>gb|AC165079.2| Mus musculus BAC clone RP24-92K17 from chromosome 16, complete sequence
          Length = 156977

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 2      agacacacacccaccccaggt 22
              |||||||||||||||||||||
Sbjct: 147173 agacacacacccaccccaggt 147153

>gb|AC154524.2| Mus musculus BAC clone RP24-68D23 from chromosome 16, complete
            sequence
          Length = 252926

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 2    agacacacacccaccccaggt 22
            |||||||||||||||||||||
Sbjct: 2063 agacacacacccaccccaggt 2043

>gb|AC144400.2| Lemur catta clone LBNL2-87E20, complete sequence
          Length = 181705

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 191    cgggaggaggccatggtgtc 210
              ||||||||||||||||||||
Sbjct: 106586 cgggaggaggccatggtgtc 106567

>gb|AC091231.10| Homo sapiens chromosome 15, clone RP11-702L15, complete sequence
          Length = 187779

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    tggatgccttgttgctgctg 46
             ||||||||||||||||||||
Sbjct: 74265 tggatgccttgttgctgctg 74284

>emb|AL117344.12|HSJ395C13 Human DNA sequence from clone RP3-395C13 on chromosome 6q25.2-26
             Contains the 5' end of a novel gene, a hypothetical
             protein PNAS-131 pseudogene and a CpG island, complete
             sequence
          Length = 150336

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    gcgcctcccttcttcctcct 114
             ||||||||||||||||||||
Sbjct: 12867 gcgcctcccttcttcctcct 12848

>emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete genome; segment 13/29
          Length = 293050

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 351    cctccacgccgtccccggcg 370
              ||||||||||||||||||||
Sbjct: 117217 cctccacgccgtccccggcg 117198

>dbj|AK125637.1| Homo sapiens cDNA FLJ43649 fis, clone SYNOV4001326
          Length = 3837

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 95  gcgcctcccttcttcctcct 114
           ||||||||||||||||||||
Sbjct: 123 gcgcctcccttcttcctcct 142

>ref|XM_925812.1| PREDICTED: Homo sapiens hypothetical gene supported by AK125637
           (LOC401280), mRNA
          Length = 3823

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 95  gcgcctcccttcttcctcct 114
           ||||||||||||||||||||
Sbjct: 117 gcgcctcccttcttcctcct 136

>gb|AC090425.15| Homo sapiens 3 BAC RP11-15L13 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 97868

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    cgcctcccttcttcctcctg 115
             ||||||||||||||||||||
Sbjct: 38628 cgcctcccttcttcctcctg 38609

>gb|AC073896.41| Homo sapiens 12 BAC RP11-977G19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 174487

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 97    gcctcccttcttcctcctgg 116
             ||||||||||||||||||||
Sbjct: 85956 gcctcccttcttcctcctgg 85975

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 238     ggccacgggcgcggcggacc 257
               ||||||||||||||||||||
Sbjct: 1839286 ggccacgggcgcggcggacc 1839267

>ref|NM_001013682.1| Homo sapiens hypothetical gene supported by AK125637 (LOC401280),
           mRNA
          Length = 3837

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 95  gcgcctcccttcttcctcct 114
           ||||||||||||||||||||
Sbjct: 123 gcgcctcccttcttcctcct 142

>gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, complete genome
          Length = 156487

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 337   ctcccccgcgtccccctccacgccgtccccggcgcc 372
             |||||||||||||||| || |||||  |||||||||
Sbjct: 57143 ctcccccgcgtcccccgccccgccgcgcccggcgcc 57178

>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 307     cgtggtcaccacgccggggc 326
               ||||||||||||||||||||
Sbjct: 2928350 cgtggtcaccacgccggggc 2928369

>emb|AL772319.13| Mouse DNA sequence from clone RP23-397E2 on chromosome 4, complete
           sequence
          Length = 206709

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 101 cccttcttcctcctggactt 120
           ||||||||||||||||||||
Sbjct: 786 cccttcttcctcctggactt 805

>emb|Z75742.1|HSLUCA10 Human DNA sequence from clone XXcos-10 on chromosome 3, complete
             sequence
          Length = 36016

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    gctgctgagcccaggccttc 59
             ||||||||||||||||||||
Sbjct: 10812 gctgctgagcccaggccttc 10793

>emb|AL954151.8| Mouse DNA sequence from clone RP24-370P7 on chromosome 4, complete
            sequence
          Length = 3994

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 101  cccttcttcctcctggactt 120
            ||||||||||||||||||||
Sbjct: 2780 cccttcttcctcctggactt 2799


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,825,105
Number of Sequences: 3902068
Number of extensions: 2825105
Number of successful extensions: 67367
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67115
Number of HSP's gapped (non-prelim): 252
length of query: 376
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 354
effective length of database: 17,147,199,772
effective search space: 6070108719288
effective search space used: 6070108719288
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)