>ref|XM_465561.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3440

 Score =  139 bits (70), Expect = 8e-30
 Identities = 220/269 (81%), Gaps = 12/269 (4%)
 Strand = Plus / Plus

                                                                       
Query: 111 gccgctgtccggcgccgcggcgccccggccggcgagatgaggagccccttccggctaccc 170
           ||||| ||||| ||||||||| | |||||||||| ||||||   ||||| | |||  | |
Sbjct: 106 gccgccgtccgccgccgcggcactccggccggcgggatgag---cccctccgggcggctc 162

                                                                       
Query: 171 gccgcccccttcgtatccgcgctcgtcctcctcatgctcgctctggttccgtccccggag 230
            ||||||||||||| | | | |||||||| ||  ||||||||||||| ||||| ||||||
Sbjct: 163 cccgcccccttcgtcttccccctcgtcctgctgctgctcgctctggtgccgtcaccggag 222

                                                                       
Query: 231 gcggccgagaccaccacaccggggacccggacgcgcaagctcggccccggcggctcttcc 290
           ||||||||| ||||    |||||||| |||||||||||| |||||  || ||      ||
Sbjct: 223 gcggccgagtccacg---ccggggacgcggacgcgcaagatcggcggcgccg------cc 273

                                                                       
Query: 291 tcggtgttctcgctcttcaacctcaagccccagagcaagttctggacggaatcggtcatg 350
           |||||||||||||||||||||||||||||||||| |||||||||| |||| || ||||| 
Sbjct: 274 tcggtgttctcgctcttcaacctcaagccccagaacaagttctggtcggagtccgtcatc 333

                                        
Query: 351 cggacagagttcgatgacctggtgggctc 379
           || || || ||||||||| ||| ||||||
Sbjct: 334 cgcacggaattcgatgacttggagggctc 362

>dbj|AK066401.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063N21, full
           insert sequence
          Length = 3439

 Score =  131 bits (66), Expect = 2e-27
 Identities = 219/269 (81%), Gaps = 12/269 (4%)
 Strand = Plus / Plus

                                                                       
Query: 111 gccgctgtccggcgccgcggcgccccggccggcgagatgaggagccccttccggctaccc 170
           ||||| ||||| ||||||||| | |||||||||| ||||||   ||||| | |||  | |
Sbjct: 106 gccgccgtccgccgccgcggcactccggccggcgggatgag---cccctccgggcggctc 162

                                                                       
Query: 171 gccgcccccttcgtatccgcgctcgtcctcctcatgctcgctctggttccgtccccggag 230
            ||||||||||||| | | | |||||||| ||  || |||||||||| ||||| ||||||
Sbjct: 163 cccgcccccttcgtcttccccctcgtcctgctgctgttcgctctggtgccgtcaccggag 222

                                                                       
Query: 231 gcggccgagaccaccacaccggggacccggacgcgcaagctcggccccggcggctcttcc 290
           ||||||||| ||||    |||||||| |||||||||||| |||||  || ||      ||
Sbjct: 223 gcggccgagtccacg---ccggggacgcggacgcgcaagatcggcggcgccg------cc 273

                                                                       
Query: 291 tcggtgttctcgctcttcaacctcaagccccagagcaagttctggacggaatcggtcatg 350
           |||||||||||||||||||||||||||||||||| |||||||||| |||| || ||||| 
Sbjct: 274 tcggtgttctcgctcttcaacctcaagccccagaacaagttctggtcggagtccgtcatc 333

                                        
Query: 351 cggacagagttcgatgacctggtgggctc 379
           || || || ||||||||| ||| ||||||
Sbjct: 334 cgcacggaattcgatgacttggagggctc 362

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 110/131 (83%), Gaps = 9/131 (6%)
 Strand = Plus / Plus

                                                                            
Query: 219      ccgtccccggaggcggccgagaccaccacaccggggacccggacgcgcaagctcggcccc 278
                ||||| ||||||||||||||| ||||    |||||||| |||||||||||| |||||  |
Sbjct: 15936110 ccgtcaccggaggcggccgagtccacg---ccggggacgcggacgcgcaagatcggcggc 15936166

                                                                            
Query: 279      ggcggctcttcctcggtgttctcgctcttcaacctcaagccccagagcaagttctggacg 338
                | ||      |||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 15936167 gccg------cctcggtgttctcgctcttcaacctcaagccccagaacaagttctggtcg 15936220

                           
Query: 339      gaatcggtcat 349
                || || |||||
Sbjct: 15936221 gagtccgtcat 15936231



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 86/107 (80%), Gaps = 3/107 (2%)
 Strand = Plus / Plus

                                                                            
Query: 111      gccgctgtccggcgccgcggcgccccggccggcgagatgaggagccccttccggctaccc 170
                ||||| ||||| ||||||||| | |||||||||| ||||||   ||||| | |||  | |
Sbjct: 15935906 gccgccgtccgccgccgcggcactccggccggcgggatgag---cccctccgggcggctc 15935962

                                                               
Query: 171      gccgcccccttcgtatccgcgctcgtcctcctcatgctcgctctggt 217
                 ||||||||||||| | | | |||||||| ||  |||||||||||||
Sbjct: 15935963 cccgcccccttcgtcttccccctcgtcctgctgctgctcgctctggt 15936009

>dbj|AP004131.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1057_F01
          Length = 120026

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 110/131 (83%), Gaps = 9/131 (6%)
 Strand = Plus / Plus

                                                                         
Query: 219   ccgtccccggaggcggccgagaccaccacaccggggacccggacgcgcaagctcggcccc 278
             ||||| ||||||||||||||| ||||    |||||||| |||||||||||| |||||  |
Sbjct: 79785 ccgtcaccggaggcggccgagtccacg---ccggggacgcggacgcgcaagatcggcggc 79841

                                                                         
Query: 279   ggcggctcttcctcggtgttctcgctcttcaacctcaagccccagagcaagttctggacg 338
             | ||      |||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 79842 gccg------cctcggtgttctcgctcttcaacctcaagccccagaacaagttctggtcg 79895

                        
Query: 339   gaatcggtcat 349
             || || |||||
Sbjct: 79896 gagtccgtcat 79906



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 86/107 (80%), Gaps = 3/107 (2%)
 Strand = Plus / Plus

                                                                         
Query: 111   gccgctgtccggcgccgcggcgccccggccggcgagatgaggagccccttccggctaccc 170
             ||||| ||||| ||||||||| | |||||||||| ||||||   ||||| | |||  | |
Sbjct: 79581 gccgccgtccgccgccgcggcactccggccggcgggatgag---cccctccgggcggctc 79637

                                                            
Query: 171   gccgcccccttcgtatccgcgctcgtcctcctcatgctcgctctggt 217
              ||||||||||||| | | | |||||||| ||  |||||||||||||
Sbjct: 79638 cccgcccccttcgtcttccccctcgtcctgctgctgctcgctctggt 79684

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 122      gcgccgcggcgccccggccggcgag 146
                |||||||||||||| ||||||||||
Sbjct: 28392563 gcgccgcggcgcccgggccggcgag 28392539

>dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0470D12
          Length = 157248

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 122    gcgccgcggcgccccggccggcgag 146
              |||||||||||||| ||||||||||
Sbjct: 118126 gcgccgcggcgcccgggccggcgag 118102

>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 263     gcgcaagctcggccccggcg 282
               ||||||||||||||||||||
Sbjct: 3025107 gcgcaagctcggccccggcg 3025126

>ref|XM_957564.1| Neurospora crassa OR74A hypothetical protein ( (AF401237)
            cystathionine beta-lyase [Neurospora crassa OR74A] )
            (NCU07987.1) partial mRNA
          Length = 1374

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 228  gaggcggccgagaccaccac 247
            ||||||||||||||||||||
Sbjct: 1333 gaggcggccgagaccaccac 1352

>ref|XM_328692.1| Neurospora crassa OR74A hypothetical protein ( (AF401237)
            cystathionine beta-lyase [Neurospora crassa OR74A] )
            (NCU07987.1) partial mRNA
          Length = 1374

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 228  gaggcggccgagaccaccac 247
            ||||||||||||||||||||
Sbjct: 1333 gaggcggccgagaccaccac 1352

>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 113     cgctgtccggcgccgcggcg 132
               ||||||||||||||||||||
Sbjct: 2905520 cgctgtccggcgccgcggcg 2905501

>ref|XM_534089.2| PREDICTED: Canis familiaris similar to HMT1 hnRNP
           methyltransferase-like 3, transcript variant 1
           (LOC476887), mRNA
          Length = 1864

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 118 tccggcgccgcggcgccccggccg 141
           |||| |||||||||||||||||||
Sbjct: 167 tccgccgccgcggcgccccggccg 144

>emb|AL356440.11| Human DNA sequence from clone RP1-299F11 on chromosome 11 Contains part
             of a gene similar to D.melanogaster protein (CG14464),
             STSs, GSSs and a CpG island, complete sequence
          Length = 54446

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   ttccgtccccggaggcggcc 236
             ||||||||||||||||||||
Sbjct: 43010 ttccgtccccggaggcggcc 42991

>gb|AF401237.1|AF401237 Neurospora crassa cystathionine beta-lyase (met-2) gene, complete cds
          Length = 2875

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 228  gaggcggccgagaccaccac 247
            ||||||||||||||||||||
Sbjct: 2638 gaggcggccgagaccaccac 2657

>gb|AC013731.10| Homo sapiens BAC clone RP11-546J1 from 2, complete sequence
          Length = 151851

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 33     gatgaactgagacagtagca 52
              ||||||||||||||||||||
Sbjct: 102412 gatgaactgagacagtagca 102431

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 188     cgcgctcgtcctcctcatgc 207
               ||||||||||||||||||||
Sbjct: 7474005 cgcgctcgtcctcctcatgc 7473986

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 122     gcgccgcggcgccccggccg 141
               ||||||||||||||||||||
Sbjct: 1342244 gcgccgcggcgccccggccg 1342225



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 120   cggcgccgcggcgccccggccggc 143
             |||||||||||||||| |||||||
Sbjct: 77505 cggcgccgcggcgcccgggccggc 77528

>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 107     cgcagccgctgtccggcgcc 126
               ||||||||||||||||||||
Sbjct: 2404025 cgcagccgctgtccggcgcc 2404006


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,392,151
Number of Sequences: 3902068
Number of extensions: 2392151
Number of successful extensions: 49142
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48393
Number of HSP's gapped (non-prelim): 745
length of query: 405
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 383
effective length of database: 17,147,199,772
effective search space: 6567377512676
effective search space used: 6567377512676
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)