ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl44a06 |
|---|---|
| Clone Library Name | barley_pub |
>DAB1_MACFA (Q9BGX5) Disabled homolog 1| Length = 555 Score = 31.2 bits (69), Expect = 0.74 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 6/30 (20%) Frame = +3 Query: 42 PVNHSPPLPAPRSRSTS------AADPTTD 113 P +SPP PAPR S S A+DPTTD Sbjct: 477 PSTNSPPTPAPRQSSPSKSSASHASDPTTD 506
>DAB1_HUMAN (O75553) Disabled homolog 1| Length = 555 Score = 31.2 bits (69), Expect = 0.74 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 6/30 (20%) Frame = +3 Query: 42 PVNHSPPLPAPRSRSTS------AADPTTD 113 P +SPP PAPR S S A+DPTTD Sbjct: 477 PSTNSPPTPAPRQSSPSKSSASHASDPTTD 506
>IRS1_RAT (P35570) Insulin receptor substrate 1 (IRS-1) (pp185)| Length = 1235 Score = 30.8 bits (68), Expect = 0.97 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = +3 Query: 24 ASRLFAPVNHSPPLPAPRSRSTSAADPTTDTPHAVALRRGCTAD 155 +SRL P+NHS +P P SR + +A + G T+D Sbjct: 357 SSRLHPPLNHSRSIPMPSSRCSPSATSPVSLSSSSTSGHGSTSD 400
>IRS1_MOUSE (P35569) Insulin receptor substrate 1 (IRS-1)| Length = 1233 Score = 30.8 bits (68), Expect = 0.97 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = +3 Query: 24 ASRLFAPVNHSPPLPAPRSRSTSAADPTTDTPHAVALRRGCTAD 155 +SRL P+NHS +P P SR + +A + G T+D Sbjct: 357 SSRLHPPLNHSRSIPMPSSRCSPSATSPVSLSSSSTSGHGSTSD 400
>MUC4_HUMAN (Q99102) Mucin-4 (Tracheobronchial mucin) (Fragment)| Length = 610 Score = 30.0 bits (66), Expect = 1.6 Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 4/45 (8%) Frame = +3 Query: 3 HTTIFQLASRLFAPVNHSPPLP--APRSRSTSAAD--PTTDTPHA 125 HTT + S A H+ PLP +P S STS A P TDT A Sbjct: 520 HTTPLHVTSPSSASTGHATPLPVTSPSSASTSHATSLPVTDTSSA 564
>IRS1_HUMAN (P35568) Insulin receptor substrate 1 (IRS-1)| Length = 1242 Score = 29.6 bits (65), Expect = 2.2 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +3 Query: 24 ASRLFAPVNHSPPLPAPRSRSTSAADPTTDTPHAVALRRGCTAD 155 ++RL P+NHS +P P SR + +A + G T+D Sbjct: 362 SARLHPPLNHSRSIPMPASRCSPSATSPVSLSSSSTSGHGSTSD 405
>IRS1A_XENLA (Q91615) Insulin receptor substrate 1-A (IRS1-A) (xIRS-1-A)| (XIRS-L) Length = 885 Score = 29.6 bits (65), Expect = 2.2 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +3 Query: 24 ASRLFAPVNHSPPLPAPRSRSTSAADPTTDTPHAVALRRGCTAD 155 +SRL P+NHS +P P +R + +A + G T+D Sbjct: 155 SSRLHPPLNHSRSIPMPATRCSPSATSPVSLSSSSTSGHGSTSD 198
>DNAE2_SYMTH (Q67N73) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1085 Score = 29.6 bits (65), Expect = 2.2 Identities = 19/58 (32%), Positives = 31/58 (53%) Frame = -3 Query: 229 DLIRHGGGALVEVD*QRARLVHGAGSAVHPRRRATACGVSVVGSAAEVDRDLGAGRGG 56 DL+R GGA+ + A ++ GA +H RRA V+ + A + ++ GAG+ G Sbjct: 868 DLVRRTGGAVPRGPLE-ALVLAGAFDRLHSNRRAALWQVAHLLEAERIRQERGAGQAG 924
>IRS1_CERAE (Q28224) Insulin receptor substrate 1 (IRS-1)| Length = 1251 Score = 29.6 bits (65), Expect = 2.2 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +3 Query: 24 ASRLFAPVNHSPPLPAPRSRSTSAADPTTDTPHAVALRRGCTAD 155 ++RL P+NHS +P P SR + +A + G T+D Sbjct: 362 SARLHPPLNHSRSIPMPASRCSPSATSPVSLSSSSTSGHGSTSD 405
>IRS1B_XENLA (P84770) Insulin receptor substrate 1-B (IRS1-B) (xIRS-1-B)| (XIRS-L') Length = 1088 Score = 29.6 bits (65), Expect = 2.2 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +3 Query: 24 ASRLFAPVNHSPPLPAPRSRSTSAADPTTDTPHAVALRRGCTAD 155 +SRL P+NHS +P P +R + +A + G T+D Sbjct: 358 SSRLHPPLNHSRSIPMPATRCSPSATSPVSLSSSSTSGHGSTSD 401
>THIC_RHILO (Q98AZ3) Thiamine biosynthesis protein thiC| Length = 619 Score = 28.9 bits (63), Expect = 3.7 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 8/75 (10%) Frame = +2 Query: 26 ISPLRSCQPLPPS-----SG---SQISIHLRRRSNHRYPTRRRPPARVHGRSGAMDKPCT 181 ++P S PLP S SG QI + +R S H PT PP V+ SG P T Sbjct: 12 LTPAVSTGPLPASRKIHKSGVLHPQIRVPMREISVH--PTAGEPPVIVYDPSGPYTDP-T 68 Query: 182 LLVHFDKGSAAMANE 226 + +KG A + +E Sbjct: 69 VETSIEKGLARLRHE 83
>ISPG_AQUAE (O67496) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 357 Score = 28.5 bits (62), Expect = 4.8 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = -3 Query: 121 CGVSVVGSAAEVDRDLGAGRGGEWL 47 C V+ +G A E D L GRG WL Sbjct: 300 CVVNAIGEAREADIGLACGRGFAWL 324
>YNP2_YEAST (P53901) Hypothetical 46.2 kDa protein in YCK2-RPC8 intergenic| region Length = 409 Score = 28.1 bits (61), Expect = 6.3 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +2 Query: 50 PLPPSSGSQISIHLRRRSNHRYPTRRRPPARV 145 PLP +S S + R N PTR+RPP R+ Sbjct: 381 PLPTTSNSNFN----SRKNSMSPTRKRPPPRL 408
>SOS2_HUMAN (Q07890) Son of sevenless homolog 2 (SOS-2)| Length = 1332 Score = 28.1 bits (61), Expect = 6.3 Identities = 15/29 (51%), Positives = 15/29 (51%) Frame = +3 Query: 51 HSPPLPAPRSRSTSAADPTTDTPHAVALR 137 HSPP P PR DP DTP V LR Sbjct: 1201 HSPPPPPPR-------DPLPDTPPPVPLR 1222
>SOCS1_MOUSE (O35716) Suppressor of cytokine signaling 1 (SOCS-1) (JAK-binding| protein) (JAB) (STAT-induced STAT inhibitor 1) (SSI-1) Length = 212 Score = 28.1 bits (61), Expect = 6.3 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = +3 Query: 21 LASRLFAPVNHSPPLPAPRSRSTSAADPTTDTPHAVALRRGCTADPAP 164 +A A N P PR RS ++ ++ +P A R C A PAP Sbjct: 2 VARNQVAADNAISPAAEPRRRSEPSSSSSSSSPAAPVRPRPCPAVPAP 49
>S27A3_HUMAN (Q5K4L6) Long-chain fatty acid transport protein 3 (EC 6.2.1.-)| (Fatty acid transport protein 3) (FATP-3) (Very long-chain acyl-CoA synthetase homolog 3) (VLCS-3) (Solute carrier family 27 member 3) Length = 683 Score = 28.1 bits (61), Expect = 6.3 Identities = 16/36 (44%), Positives = 17/36 (47%) Frame = -3 Query: 163 GAGSAVHPRRRATACGVSVVGSAAEVDRDLGAGRGG 56 G GSA R A G + GS AE GA RGG Sbjct: 123 GEGSAGEGERAAPGAGDAAAGSGAEFAGGDGAARGG 158
>AMOT_MOUSE (Q8VHG2) Angiomotin (Fragment)| Length = 926 Score = 27.7 bits (60), Expect = 8.2 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = +3 Query: 6 TTIFQLASRLFAPVNHSPPLPAPRSRSTSAADPT 107 TT Q+A APV +PAP + SA PT Sbjct: 810 TTAIQVAPATSAPVPSPASIPAPATAQASAPTPT 843
>FTSH_TOBAC (O82150) Cell division protein ftsH homolog, chloroplast precursor| (EC 3.4.24.-) (DS9) Length = 714 Score = 27.7 bits (60), Expect = 8.2 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +3 Query: 36 FAPVNHSPPLPAPRSRSTSAADPTTDTP 119 +A N +P +P PR AA+PTT P Sbjct: 74 YALDNTTPTVPTPRVIQAEAANPTTSNP 101
>CS016_HUMAN (Q8ND99) Protein C19orf16| Length = 567 Score = 27.7 bits (60), Expect = 8.2 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = +3 Query: 39 APVNHSPPLPAPRSRSTSAADPTTDTPHAVALRRGCTADPAP 164 AP +P +PAP ++ + P+ A A R +A PAP Sbjct: 110 APSQKAPAVPAPSQKAPAIPAPSRKASAASASPRKASAVPAP 151
>TR10C_HUMAN (O14798) Tumor necrosis factor receptor superfamily member 10C| precursor (Decoy receptor 1) (DcR1) (Decoy TRAIL receptor without death domain) (TNF-related apoptosis-inducing ligand receptor 3) (TRAIL receptor 3) (TRAIL-R3) (Trail receptor wi Length = 259 Score = 27.7 bits (60), Expect = 8.2 Identities = 14/40 (35%), Positives = 16/40 (40%) Frame = +3 Query: 45 VNHSPPLPAPRSRSTSAADPTTDTPHAVALRRGCTADPAP 164 +N SP PAP + T P T P A PAP Sbjct: 183 MNTSPGTPAPAAEETMTTSPGTPAPAAEETMTTSPGTPAP 222
>DAB1_MOUSE (P97318) Disabled homolog 1| Length = 588 Score = 27.7 bits (60), Expect = 8.2 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 6/30 (20%) Frame = +3 Query: 42 PVNHSPPLPAPRSRSTS------AADPTTD 113 P +SPP PAPR S S +DPT D Sbjct: 510 PSTNSPPTPAPRQSSPSKSSASHVSDPTAD 539
>NCOR2_MOUSE (Q9WU42) Nuclear receptor corepressor 2 (N-CoR2) (Silencing mediator| of retinoic acid and thyroid hormone receptor) (SMRT) (SMRTe) (Thyroid-, retinoic-acid-receptor-associated corepressor) (T3 receptor-associating factor) (TRAC) Length = 2472 Score = 27.7 bits (60), Expect = 8.2 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = +3 Query: 3 HTTIFQLASRLFAPVNHSPPLPAPRSRSTSAADPTTDTPHAV 128 HT I + ++ AP + SP PAP S S + T P ++ Sbjct: 1946 HTAIARTPAKNLAPHHASPDPPAPTSASDLHREKTQSKPFSI 1987
>PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 27.7 bits (60), Expect = 8.2 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = +2 Query: 95 RRSNHRYPTRRRPPARVHGRSGA 163 RR ++R P RRRP R H RS A Sbjct: 409 RRDSYRDPYRRRPGDRSHSRSPA 431
>NHK1_DROME (Q7KRY6) Nucleosomal histone kinase 1 (EC 2.7.11.1) (Protein| baellchen) Length = 599 Score = 27.7 bits (60), Expect = 8.2 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = +3 Query: 42 PVNHSPPLPAPRSRSTSAADPTTDTPHAVALR 137 P + P +P+ RST A P TP A LR Sbjct: 443 PRERATPKASPKPRSTPKASPKPQTPTAARLR 474
>ROR1_HUMAN (Q01973) Tyrosine-protein kinase transmembrane receptor ROR1| precursor (EC 2.7.10.1) (Neurotrophic tyrosine kinase, receptor-related 1) Length = 937 Score = 27.7 bits (60), Expect = 8.2 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = +3 Query: 45 VNHSPPLPAPRSRSTSAADPTTDTPHAVAL 134 + H PP P+SRS S+A +T T H +L Sbjct: 845 IQHCPP---PKSRSPSSASGSTSTGHVTSL 871
>IRS1_XENTR (Q6P4Y6) Insulin receptor substrate 1 (IRS-1)| Length = 654 Score = 27.7 bits (60), Expect = 8.2 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 7/45 (15%) Frame = +2 Query: 56 PPSSGSQISIHLR-------RRSNHRYPTRRRPPARVHGRSGAMD 169 PPS G +SIH R R +HR P R R HG + D Sbjct: 557 PPSPGEYVSIHFRAPPEEDLREGSHRCPKR----VRFHGGAALGD 597
>RIPA_COREF (Q8FQS2) HTH-type transcriptional repressor of iron proteins A| Length = 332 Score = 27.7 bits (60), Expect = 8.2 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 5/47 (10%) Frame = +3 Query: 27 SRLFAPVNHSPPLPAPRS----RSTSAADPTTDTP-HAVALRRGCTA 152 ++LFA +PPLPAPR T AA+P T A +RG +A Sbjct: 93 AKLFADRVPTPPLPAPRHARAVAQTLAANPADQTSLEEFAAQRGVSA 139 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,431,162 Number of Sequences: 219361 Number of extensions: 588342 Number of successful extensions: 3022 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 2701 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3005 length of database: 80,573,946 effective HSP length: 58 effective length of database: 67,851,008 effective search space used: 1628424192 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
