ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl44a02 |
|---|---|
| Clone Library Name | barley_pub |
>ICK_HUMAN (Q9UPZ9) Serine/threonine-protein kinase ICK (EC 2.7.11.22)| (Intestinal cell kinase) (hICK) (MAK-related kinase) (MRK) (Laryngeal cancer kinase 2) (LCK2) Length = 632 Score = 32.0 bits (71), Expect = 0.45 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 9/76 (11%) Frame = +2 Query: 2 RSDPLPYLKNSPPSMKSAAPEDRI---------PPLP*KYRPSR*PQSRTHVPTTRQRRS 154 ++ P PY+K PP+ A P RI PPL Y P + SRT P+ Q Sbjct: 310 KAGPPPYIKPVPPAQPPAKPHTRISSRQHQASQPPLHLTY-PYKAEVSRTDHPSHLQEDK 368 Query: 155 PTRFLPGKCRSEEPRA 202 P+ L ++ P++ Sbjct: 369 PSPLLFPSLHNKHPQS 384
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 31.6 bits (70), Expect = 0.59 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 4/57 (7%) Frame = +2 Query: 2 RSDPLPYLKNS--PPSMKSAAPEDRIPPLP*KYRPSR*PQSRT--HVPTTRQRRSPT 160 RS LP ++ PP +S +P PP+ +Y PS P+ RT P ++R SP+ Sbjct: 565 RSPSLPRRRSPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPS 621
>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich| glycoprotein) Length = 620 Score = 31.2 bits (69), Expect = 0.77 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Frame = +2 Query: 5 SDPLPYLKNSPPSMKSAAPEDRIPPLP*KYRPSR*PQSRTHVPTT--RQRRSPT 160 S P P PPS + P ++ PLP + P P R H+P RQ R PT Sbjct: 473 SPPPPAYSPPPPSPIYSPPPPQVQPLPPTFSPP--PPRRIHLPPPPHRQPRPPT 524
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 31.2 bits (69), Expect = 0.77 Identities = 17/50 (34%), Positives = 24/50 (48%) Frame = +2 Query: 35 PPSMKSAAPEDRIPPLP*KYRPSR*PQSRTHVPTTRQRRSPTRFLPGKCR 184 PP +S +P PP+ +Y PS P+ RT P +R + P K R Sbjct: 599 PPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRR 648
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 31.2 bits (69), Expect = 0.77 Identities = 17/50 (34%), Positives = 24/50 (48%) Frame = +2 Query: 35 PPSMKSAAPEDRIPPLP*KYRPSR*PQSRTHVPTTRQRRSPTRFLPGKCR 184 PP +S +P PP+ +Y PS P+ RT P +R + P K R Sbjct: 604 PPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRR 653 Score = 28.1 bits (61), Expect = 6.5 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 5/52 (9%) Frame = +2 Query: 20 YLKNSPPSMKSAAPED-----RIPPLP*KYRPSR*PQSRTHVPTTRQRRSPT 160 Y + PP ++A+P P P K R S P + PT +RRSP+ Sbjct: 623 YSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPTVTKRRSPS 674
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 31.2 bits (69), Expect = 0.77 Identities = 17/50 (34%), Positives = 24/50 (48%) Frame = +2 Query: 35 PPSMKSAAPEDRIPPLP*KYRPSR*PQSRTHVPTTRQRRSPTRFLPGKCR 184 PP +S +P PP+ +Y PS P+ RT P +R + P K R Sbjct: 585 PPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRR 634
>ADDA_RAT (Q63028) Alpha-adducin (Erythrocyte adducin alpha subunit)| Length = 735 Score = 30.4 bits (67), Expect = 1.3 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%) Frame = -3 Query: 197 AAPQTGIFPEGSAWGTVVDASWVRGSDSVATSTGDTFM--EVAVFCPRGRLISW 42 AAPQ G+ + G V + +RGSDS+A G+ + ++A F L W Sbjct: 108 AAPQGGMAALNMSLGMVTPVNDLRGSDSIAYDKGEKLLRCKLAAFYRLADLFGW 161
>ADDA_MOUSE (Q9QYC0) Alpha-adducin (Erythrocyte adducin alpha subunit)| Length = 735 Score = 30.4 bits (67), Expect = 1.3 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%) Frame = -3 Query: 197 AAPQTGIFPEGSAWGTVVDASWVRGSDSVATSTGDTFM--EVAVFCPRGRLISW 42 AAPQ G+ + G V + +RGSDS+A G+ + ++A F L W Sbjct: 108 AAPQGGMAALNMSLGMVTPVNDLRGSDSIAYDKGEKLLRCKLAAFYRLADLFGW 161
>ADDA_HUMAN (P35611) Alpha-adducin (Erythrocyte adducin alpha subunit)| Length = 737 Score = 30.4 bits (67), Expect = 1.3 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%) Frame = -3 Query: 197 AAPQTGIFPEGSAWGTVVDASWVRGSDSVATSTGDTFM--EVAVFCPRGRLISW 42 AAPQ G+ + G V + +RGSDS+A G+ + ++A F L W Sbjct: 108 AAPQGGMAALNMSLGMVTPVNDLRGSDSIAYDKGEKLLRCKLAAFYRLADLFGW 161
>PHBC_RALEU (P23608) Poly-beta-hydroxybutyrate polymerase (EC 2.3.1.-)| (Poly(3-hydroxybutyrate) polymerase) (PHB polymerase) (PHB synthase) (Poly(3-hydroxyalkanoate) polymerase) (PHA polymerase) (PHA synthase) (Polyhydroxyalkanoic acid synthase) Length = 589 Score = 28.9 bits (63), Expect = 3.8 Identities = 14/55 (25%), Positives = 25/55 (45%) Frame = -3 Query: 167 GSAWGTVVDASWVRGSDSVATSTGDTFMEVAVFCPRGRLISWKVASSLGRGGDPS 3 GS W ++ + +R + +G + V FC G ++S +A RG P+ Sbjct: 286 GSTWDDYIEHAAIRAIEVARDISGQDKINVLGFCVGGTIVSTALAVLAARGEHPA 340
>CD2L7_HUMAN (Q9NYV4) Cell division cycle 2-related protein kinase 7 (EC| 2.7.11.22) (CDC2-related protein kinase 7) (Cdc2-related kinase, arginine/serine-rich) (CrkRS) Length = 1490 Score = 28.5 bits (62), Expect = 5.0 Identities = 10/25 (40%), Positives = 15/25 (60%) Frame = +2 Query: 11 PLPYLKNSPPSMKSAAPEDRIPPLP 85 PLP + + PP + + P + PPLP Sbjct: 528 PLPTIASPPPPLPTTTPPPQTPPLP 552
>EXTN2_ARATH (Q9M1G9) Extensin-2 precursor (AtExt2) (Cell wall| hydroxyproline-rich glycoprotein 1) (HRGP1) Length = 743 Score = 28.5 bits (62), Expect = 5.0 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%) Frame = +2 Query: 2 RSDPLPYLKNSPPSMKSAAP--EDRIPPLP*KYRPSR*PQSRTHVPTTR 142 ++ PLPY+ +SPP + AP E + PP P Y P T+ P+ + Sbjct: 45 KTPPLPYVDSSPPPTYTPAPEVEYKSPPPPYVYSS---PPPPTYSPSPK 90
>RAD52_MAGGR (Q8NK72) DNA repair and recombination protein rhm52 (RAD52 homolog)| Length = 565 Score = 28.5 bits (62), Expect = 5.0 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = +2 Query: 14 LPYLKNSPPSMKSAAPEDRIPPLP*KYRPS 103 LP +K P + SAAP +PPLP K S Sbjct: 203 LPPVKPEPSNTASAAPHPPLPPLPGKLSDS 232
>YFGG_SCHPO (O13854) Hypothetical serine/threonine-rich protein C19G12.16c| precursor Length = 670 Score = 28.5 bits (62), Expect = 5.0 Identities = 13/46 (28%), Positives = 24/46 (52%) Frame = -3 Query: 164 SAWGTVVDASWVRGSDSVATSTGDTFMEVAVFCPRGRLISWKVASS 27 S++ T+ + S + S S T+TG + + F P + S ++SS Sbjct: 197 SSFSTITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSVISSASLSSS 242
>KCNA6_HUMAN (P17658) Potassium voltage-gated channel subfamily A member 6| (Voltage-gated potassium channel subunit Kv1.6) (HBK2) Length = 529 Score = 28.1 bits (61), Expect = 6.5 Identities = 14/46 (30%), Positives = 22/46 (47%) Frame = +1 Query: 61 RGQNTATSMKVSPVEVATESDPRTHDASTTVPHALPSGKMPV*GAA 198 RG N +VSPV ++ + D S T H + G+M G++ Sbjct: 204 RGGNNGGVSRVSPVSRGSQEEEEDEDDSYTFHHGITPGEMGTGGSS 249
>POLS_SINDO (P27285) Structural polyprotein (p130) [Contains: Capsid protein| (EC 3.4.21.-) (Coat protein) (C); p62 (E3/E2); E3 protein (Spike glycoprotein E3); E2 envelope glycoprotein (Spike glycoprotein E2); 6K protein; E1 envelope glycoprotein (Spike g Length = 1245 Score = 28.1 bits (61), Expect = 6.5 Identities = 12/40 (30%), Positives = 20/40 (50%) Frame = +2 Query: 59 PEDRIPPLP*KYRPSR*PQSRTHVPTTRQRRSPTRFLPGK 178 P R PP K P + P+ + P ++++ P + PGK Sbjct: 63 PRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGK 102
>YNE1_CAEEL (P30640) Hypothetical protein R08D7.1| Length = 458 Score = 28.1 bits (61), Expect = 6.5 Identities = 19/56 (33%), Positives = 25/56 (44%) Frame = +2 Query: 29 NSPPSMKSAAPEDRIPPLP*KYRPSR*PQSRTHVPTTRQRRSPTRFLPGKCRSEEP 196 NSPP +S D PP + RPS + R + R+S P K + EEP Sbjct: 192 NSPPRNRSRRDSDNSPP---RRRPSSPARRRKDDDLSPPRKSRKIEEPKKIKKEEP 244
>Y1353_SYNY3 (P42350) Hypothetical protein slr1353| Length = 291 Score = 27.7 bits (60), Expect = 8.5 Identities = 14/42 (33%), Positives = 19/42 (45%) Frame = +2 Query: 11 PLPYLKNSPPSMKSAAPEDRIPPLP*KYRPSR*PQSRTHVPT 136 P P ++ SP + APE + P P + PS P PT Sbjct: 132 PTPVVEKSPEVEAAIAPEPTLTPAPISFPPSPDPVLSLEEPT 173
>UL61_HCMVA (P16818) Hypothetical protein UL61| Length = 431 Score = 27.7 bits (60), Expect = 8.5 Identities = 23/59 (38%), Positives = 27/59 (45%) Frame = +2 Query: 2 RSDPLPYLKNSPPSMKSAAPEDRIPPLP*KYRPSR*PQSRTHVPTTRQRRSPTRFLPGK 178 RS PLP L PP+ P P RPS P +R PT R+RR PT P + Sbjct: 136 RSTPLPELLTGPPAPNLPGPIAVEP----GRRPSPPPSTR---PTYRRRR-PTAATPSR 186
>PYR5_DROME (Q01637) Uridine 5'-monophosphate synthase (UMP synthase)| (Rudimentary-like protein) [Includes: Orotate phosphoribosyltransferase (EC 2.4.2.10) (OPRtase); Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) (OMPdecase)] Length = 493 Score = 27.7 bits (60), Expect = 8.5 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%) Frame = -3 Query: 197 AAPQTGIF--PEGSAWGTVVDASWVRGSDSVATSTGDTFMEVAVFC 66 A + G+F E SA G ++DA + S+ +AT D V C Sbjct: 369 AGKERGVFLLAEMSASGNLIDAKYKENSNKIATEGADVDFVAGVVC 414
>E1A_ADE07 (P03256) Early E1A 28 kDa protein| Length = 261 Score = 27.7 bits (60), Expect = 8.5 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = +2 Query: 11 PLPYLKNSPPSMKSAAPEDRIPPLP*KYRPSR*P 112 P P SPP +++ AP + P+P K +P + P Sbjct: 202 PSPDSTTSPPEIQAPAPANVCKPIPVKPKPGKRP 235 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,772,072 Number of Sequences: 219361 Number of extensions: 718437 Number of successful extensions: 2600 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 2435 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2595 length of database: 80,573,946 effective HSP length: 46 effective length of database: 70,483,340 effective search space used: 1691600160 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
