ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl43h12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB066265.2| Triticum aestivum WCSP1 mRNA for cold shock protein-1, complete cds Length = 1029 Score = 323 bits (163), Expect = 1e-85 Identities = 172/175 (98%) Strand = Plus / Plus Query: 9 cgatctagggtttcctgctagggttttggtccttcgttttcggcggcgcaagatgggggc 68 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 10 cgatctagggtttcctgctagggttttggtccttcggtttcggcggcgcaagatggggga 69 Query: 69 gagggtcaagggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcatctcccc 128 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 70 gagggtcaagggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcatctcccc 129 Query: 129 ggaggacggcagcgaggacctcttcgtccaccagtccgccatcaagtcctacggc 183 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 130 ggaggacggcagcgaggacctcttcgtccaccagtccgccatcaagtccgacggc 184
>dbj|AB161683.1| Triticum aestivum WCSP3 mRNA for cold shock domain protein 3, complete cds Length = 1025 Score = 289 bits (146), Expect = 1e-75 Identities = 161/166 (96%) Strand = Plus / Plus Query: 18 gtttcctgctagggttttggtccttcgttttcggcggcgcaagatgggggcgagggtcaa 77 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1 gtttcctgctagggttttggtccttcgttttcggcggcgcaagatgggggagagggtcaa 60 Query: 78 gggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacgg 137 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 61 gggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggacgacgg 120 Query: 138 cagcgaggacctcttcgtccaccagtccgccatcaagtcctacggc 183 | |||||||||| ||||||||||||||||||||||||||| ||||| Sbjct: 121 cggcgaggaccttttcgtccaccagtccgccatcaagtccgacggc 166
>dbj|AB161682.1| Triticum aestivum WCSP2 mRNA for cold shock domain protein 2, complete cds Length = 990 Score = 244 bits (123), Expect = 8e-62 Identities = 167/181 (92%), Gaps = 3/181 (1%) Strand = Plus / Plus Query: 6 caccgatctagggtttcctgctagggttttggtccttcgttttcggcggcg---caagat 62 |||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||| Sbjct: 1 caccgatctagggtttcctgctagggttttagtccttcgtttccggcggcggcgcaagat 60 Query: 63 gggggcgagggtcaagggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcat 122 ||| | ||| | ||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct: 61 gggtgagagactgaagggtaccgtgaagtggttcaacgtgaccaaggggttcggcttcat 120 Query: 123 ctccccggaggacggcagcgaggacctcttcgtccaccagtccgccatcaagtcctacgg 182 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 121 ctccccggaggacggcagcgaggacctcttcgtccaccagtccgccatcaaggccgacgg 180 Query: 183 c 183 | Sbjct: 181 c 181
>dbj|AB158409.1| Triticum aestivum GRP mRNA for putative glycine-rich protein, complete cds Length = 996 Score = 244 bits (123), Expect = 8e-62 Identities = 167/181 (92%), Gaps = 3/181 (1%) Strand = Plus / Plus Query: 6 caccgatctagggtttcctgctagggttttggtccttcgttttcggcggcg---caagat 62 |||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||| Sbjct: 1 caccgatctagggtttcctgctagggttttagtccttcgtttccggcggcggcgcaagat 60 Query: 63 gggggcgagggtcaagggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcat 122 ||| | ||| | ||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct: 61 gggtgagagactgaagggtaccgtgaagtggttcaacgtgaccaaggggttcggcttcat 120 Query: 123 ctccccggaggacggcagcgaggacctcttcgtccaccagtccgccatcaagtcctacgg 182 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 121 ctccccggaggacggcagcgaggacctcttcgtccaccagtccgccatcaaggccgacgg 180 Query: 183 c 183 | Sbjct: 181 c 181
>ref|XM_463912.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1219 Score = 141 bits (71), Expect = 8e-31 Identities = 92/99 (92%) Strand = Plus / Plus Query: 85 gtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacggcagcgag 144 |||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||| Sbjct: 139 gtgaagtggttcaacgacaccaaggggttcggcttcatctcccccgacgacggcagcgag 198 Query: 145 gacctcttcgtccaccagtccgccatcaagtcctacggc 183 || |||||||||||||||||| |||||||| || ||||| Sbjct: 199 gatctcttcgtccaccagtcctccatcaaggccgacggc 237
>ref|XM_506692.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0088N06.21 mRNA Length = 1250 Score = 141 bits (71), Expect = 8e-31 Identities = 92/99 (92%) Strand = Plus / Plus Query: 85 gtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacggcagcgag 144 |||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||| Sbjct: 137 gtgaagtggttcaacgacaccaaggggttcggcttcatctcccccgacgacggcagcgag 196 Query: 145 gacctcttcgtccaccagtccgccatcaagtcctacggc 183 || |||||||||||||||||| |||||||| || ||||| Sbjct: 197 gatctcttcgtccaccagtcctccatcaaggccgacggc 235
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 141 bits (71), Expect = 8e-31 Identities = 92/99 (92%) Strand = Plus / Minus Query: 85 gtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacggcagcgag 144 |||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||| Sbjct: 1104156 gtgaagtggttcaacgacaccaaggggttcggcttcatctcccccgacgacggcagcgag 1104097 Query: 145 gacctcttcgtccaccagtccgccatcaagtcctacggc 183 || |||||||||||||||||| |||||||| || ||||| Sbjct: 1104096 gatctcttcgtccaccagtcctccatcaaggccgacggc 1104058
>dbj|AP004078.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1020_C02 Length = 124578 Score = 141 bits (71), Expect = 8e-31 Identities = 92/99 (92%) Strand = Plus / Minus Query: 85 gtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacggcagcgag 144 |||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||| Sbjct: 56680 gtgaagtggttcaacgacaccaaggggttcggcttcatctcccccgacgacggcagcgag 56621 Query: 145 gacctcttcgtccaccagtccgccatcaagtcctacggc 183 || |||||||||||||||||| |||||||| || ||||| Sbjct: 56620 gatctcttcgtccaccagtcctccatcaaggccgacggc 56582
>dbj|AP005851.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0088N06 Length = 123454 Score = 141 bits (71), Expect = 8e-31 Identities = 92/99 (92%) Strand = Plus / Minus Query: 85 gtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacggcagcgag 144 |||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||| Sbjct: 92864 gtgaagtggttcaacgacaccaaggggttcggcttcatctcccccgacgacggcagcgag 92805 Query: 145 gacctcttcgtccaccagtccgccatcaagtcctacggc 183 || |||||||||||||||||| |||||||| || ||||| Sbjct: 92804 gatctcttcgtccaccagtcctccatcaaggccgacggc 92766
>dbj|AK119758.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-171-F11, full insert sequence Length = 1219 Score = 141 bits (71), Expect = 8e-31 Identities = 92/99 (92%) Strand = Plus / Plus Query: 85 gtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacggcagcgag 144 |||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||| Sbjct: 139 gtgaagtggttcaacgacaccaaggggttcggcttcatctcccccgacgacggcagcgag 198 Query: 145 gacctcttcgtccaccagtccgccatcaagtcctacggc 183 || |||||||||||||||||| |||||||| || ||||| Sbjct: 199 gatctcttcgtccaccagtcctccatcaaggccgacggc 237
>dbj|AK070711.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061H10, full insert sequence Length = 1250 Score = 141 bits (71), Expect = 8e-31 Identities = 92/99 (92%) Strand = Plus / Plus Query: 85 gtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacggcagcgag 144 |||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||| Sbjct: 137 gtgaagtggttcaacgacaccaaggggttcggcttcatctcccccgacgacggcagcgag 196 Query: 145 gacctcttcgtccaccagtccgccatcaagtcctacggc 183 || |||||||||||||||||| |||||||| || ||||| Sbjct: 197 gatctcttcgtccaccagtcctccatcaaggccgacggc 235
>ref|XM_479920.1| Oryza sativa (japonica cultivar-group), mRNA Length = 963 Score = 109 bits (55), Expect = 3e-21 Identities = 100/115 (86%) Strand = Plus / Plus Query: 69 gagggtcaagggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcatctcccc 128 |||||| ||||| || |||||||||||| ||| |||||||||||||||||||||| |||| Sbjct: 101 gagggtgaaggggacggtgaagtggttcgacgccaccaaggggttcggcttcatcacccc 160 Query: 129 ggaggacggcagcgaggacctcttcgtccaccagtccgccatcaagtcctacggc 183 || |||||| ||||||| |||||||||||||| ||| | |||||||| ||||| Sbjct: 161 cgacgacggcggcgaggatctcttcgtccaccaatcctcgctcaagtccgacggc 215 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 ccacaccgatctagggtttc 22 |||||||||||||||||||| Sbjct: 16 ccacaccgatctagggtttc 35
>ref|XM_507115.1| PREDICTED Oryza sativa (japonica cultivar-group), P0582D05.112 mRNA Length = 984 Score = 109 bits (55), Expect = 3e-21 Identities = 100/115 (86%) Strand = Plus / Plus Query: 69 gagggtcaagggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcatctcccc 128 |||||| ||||| || |||||||||||| ||| |||||||||||||||||||||| |||| Sbjct: 101 gagggtgaaggggacggtgaagtggttcgacgccaccaaggggttcggcttcatcacccc 160 Query: 129 ggaggacggcagcgaggacctcttcgtccaccagtccgccatcaagtcctacggc 183 || |||||| ||||||| |||||||||||||| ||| | |||||||| ||||| Sbjct: 161 cgacgacggcggcgaggatctcttcgtccaccaatcctcgctcaagtccgacggc 215 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 ccacaccgatctagggtttc 22 |||||||||||||||||||| Sbjct: 16 ccacaccgatctagggtttc 35
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 109 bits (55), Expect = 3e-21 Identities = 100/115 (86%) Strand = Plus / Minus Query: 69 gagggtcaagggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcatctcccc 128 |||||| ||||| || |||||||||||| ||| |||||||||||||||||||||| |||| Sbjct: 1639560 gagggtgaaggggacggtgaagtggttcgacgccaccaaggggttcggcttcatcacccc 1639501 Query: 129 ggaggacggcagcgaggacctcttcgtccaccagtccgccatcaagtcctacggc 183 || |||||| ||||||| |||||||||||||| ||| | |||||||| ||||| Sbjct: 1639500 cgacgacggcggcgaggatctcttcgtccaccaatcctcgctcaagtccgacggc 1639446 Score = 48.1 bits (24), Expect = 0.009 Identities = 30/32 (93%) Strand = Plus / Plus Query: 134 acggcagcgaggacctcttcgtccaccagtcc 165 ||||| |||||||||||||||||||| ||||| Sbjct: 5852438 acggcggcgaggacctcttcgtccactagtcc 5852469 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 ccacaccgatctagggtttc 22 |||||||||||||||||||| Sbjct: 1639645 ccacaccgatctagggtttc 1639626
>dbj|AP004591.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0582D05 Length = 150483 Score = 109 bits (55), Expect = 3e-21 Identities = 100/115 (86%) Strand = Plus / Minus Query: 69 gagggtcaagggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcatctcccc 128 |||||| ||||| || |||||||||||| ||| |||||||||||||||||||||| |||| Sbjct: 39060 gagggtgaaggggacggtgaagtggttcgacgccaccaaggggttcggcttcatcacccc 39001 Query: 129 ggaggacggcagcgaggacctcttcgtccaccagtccgccatcaagtcctacggc 183 || |||||| ||||||| |||||||||||||| ||| | |||||||| ||||| Sbjct: 39000 cgacgacggcggcgaggatctcttcgtccaccaatcctcgctcaagtccgacggc 38946 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 ccacaccgatctagggtttc 22 |||||||||||||||||||| Sbjct: 39145 ccacaccgatctagggtttc 39126
>dbj|AK101577.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050L02, full insert sequence Length = 984 Score = 109 bits (55), Expect = 3e-21 Identities = 100/115 (86%) Strand = Plus / Plus Query: 69 gagggtcaagggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcatctcccc 128 |||||| ||||| || |||||||||||| ||| |||||||||||||||||||||| |||| Sbjct: 101 gagggtgaaggggacggtgaagtggttcgacgccaccaaggggttcggcttcatcacccc 160 Query: 129 ggaggacggcagcgaggacctcttcgtccaccagtccgccatcaagtcctacggc 183 || |||||| ||||||| |||||||||||||| ||| | |||||||| ||||| Sbjct: 161 cgacgacggcggcgaggatctcttcgtccaccaatcctcgctcaagtccgacggc 215 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 ccacaccgatctagggtttc 22 |||||||||||||||||||| Sbjct: 16 ccacaccgatctagggtttc 35
>dbj|AK070034.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036A08, full insert sequence Length = 963 Score = 109 bits (55), Expect = 3e-21 Identities = 100/115 (86%) Strand = Plus / Plus Query: 69 gagggtcaagggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcatctcccc 128 |||||| ||||| || |||||||||||| ||| |||||||||||||||||||||| |||| Sbjct: 101 gagggtgaaggggacggtgaagtggttcgacgccaccaaggggttcggcttcatcacccc 160 Query: 129 ggaggacggcagcgaggacctcttcgtccaccagtccgccatcaagtcctacggc 183 || |||||| ||||||| |||||||||||||| ||| | |||||||| ||||| Sbjct: 161 cgacgacggcggcgaggatctcttcgtccaccaatcctcgctcaagtccgacggc 215 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 ccacaccgatctagggtttc 22 |||||||||||||||||||| Sbjct: 16 ccacaccgatctagggtttc 35
>gb|BT016623.1| Zea mays clone Contig456 mRNA sequence Length = 1039 Score = 85.7 bits (43), Expect = 4e-14 Identities = 85/99 (85%) Strand = Plus / Plus Query: 85 gtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacggcagcgag 144 |||||||||||||||| |||||||| ||||| |||||| |||| || || || || ||| Sbjct: 89 gtgaagtggttcaacggaaccaagggcttcggtttcatcacccccgacgatgggagtgag 148 Query: 145 gacctcttcgtccaccagtccgccatcaagtcctacggc 183 ||||| |||||||||||||| ||||||||||| ||||| Sbjct: 149 gacctgttcgtccaccagtcatccatcaagtccgacggc 187
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 73.8 bits (37), Expect = 2e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacggcagc 141 ||||| ||||||||||||| | ||||||| || ||||||||||| ||||||||||||||| Sbjct: 1569266 accgtcaagtggttcaacgacgccaagggatttggcttcatctcaccggaggacggcagc 1569325 Query: 142 g 142 | Sbjct: 1569326 g 1569326 Score = 60.0 bits (30), Expect = 2e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccgga 131 ||||||||||||||||||| ||||||| |||||||||||| ||||||| Sbjct: 2921641 accgtgaagtggttcaacgatgccaagggcttcggcttcatcaccccgga 2921592
>gb|AE011765.1| Xanthomonas axonopodis pv. citri str. 306, section 143 of 469 of the complete genome Length = 10446 Score = 73.8 bits (37), Expect = 2e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacggcagc 141 ||||| ||||||||||||| | ||||||| || ||||||||||| ||||||||||||||| Sbjct: 2586 accgtcaagtggttcaacgacgccaagggatttggcttcatctcaccggaggacggcagc 2645 Query: 142 g 142 | Sbjct: 2646 g 2646
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 73.8 bits (37), Expect = 2e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacggcagc 141 ||||| ||||||||||||| | ||||||| || ||||||||||| ||||||||||||||| Sbjct: 1972271 accgtcaagtggttcaacgacgccaagggatttggcttcatctctccggaggacggcagc 1972330 Query: 142 g 142 | Sbjct: 1972331 g 1972331 Score = 46.1 bits (23), Expect = 0.037 Identities = 41/47 (87%) Strand = Plus / Minus Query: 85 gtgaagtggttcaacgtcaccaaggggttcggcttcatctccccgga 131 ||||||||||| |||| ||||||| |||||||||||| ||||||| Sbjct: 2882360 gtgaagtggtttaacgatgccaagggcttcggcttcatcaccccgga 2882314
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 69.9 bits (35), Expect = 3e-09 Identities = 89/107 (83%) Strand = Plus / Minus Query: 69 gagggtcaagggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcatctcccc 128 |||||| ||||| || |||||| | || ||| |||||| ||||||||||||||| | || Sbjct: 9401819 gagggtgaaggggacggtgaagggttttgacgccaccaatgggttcggcttcatcactcc 9401760 Query: 129 ggaggacggcagcgaggacctcttcgtccaccagtccgccatcaagt 175 || |||| | |||||||||||||| ||||||||||| || |||||| Sbjct: 9401759 cgacgacgacggcgaggacctcttcatccaccagtcctccctcaagt 9401713
>gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0002D01, from chromosome 3, complete sequence Length = 187589 Score = 69.9 bits (35), Expect = 3e-09 Identities = 89/107 (83%) Strand = Plus / Minus Query: 69 gagggtcaagggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcatctcccc 128 |||||| ||||| || |||||| | || ||| |||||| ||||||||||||||| | || Sbjct: 99219 gagggtgaaggggacggtgaagggttttgacgccaccaatgggttcggcttcatcactcc 99160 Query: 129 ggaggacggcagcgaggacctcttcgtccaccagtccgccatcaagt 175 || |||| | |||||||||||||| ||||||||||| || |||||| Sbjct: 99159 cgacgacgacggcgaggacctcttcatccaccagtcctccctcaagt 99113
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 69.9 bits (35), Expect = 3e-09 Identities = 89/107 (83%) Strand = Plus / Minus Query: 69 gagggtcaagggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcatctcccc 128 |||||| ||||| || |||||| | || ||| |||||| ||||||||||||||| | || Sbjct: 9399940 gagggtgaaggggacggtgaagggttttgacgccaccaatgggttcggcttcatcactcc 9399881 Query: 129 ggaggacggcagcgaggacctcttcgtccaccagtccgccatcaagt 175 || |||| | |||||||||||||| ||||||||||| || |||||| Sbjct: 9399880 cgacgacgacggcgaggacctcttcatccaccagtcctccctcaagt 9399834
>gb|AC144740.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0075A10, complete sequence Length = 171101 Score = 67.9 bits (34), Expect = 1e-08 Identities = 76/90 (84%) Strand = Plus / Minus Query: 86 tgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacggcagcgagg 145 ||||| ||||| ||| |||||| ||||||||||||||| | || || ||||| | |||| Sbjct: 158214 tgaaggggttcgacgccaccaatgggttcggcttcatcactcccgacaacggcggtgagg 158155 Query: 146 acctcttcgtccaccagtccgccatcaagt 175 ||||||||||||||| |||| || |||||| Sbjct: 158154 acctcttcgtccaccggtcctccctcaagt 158125
>gb|AC109596.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1593_C11, complete sequence Length = 112065 Score = 67.9 bits (34), Expect = 1e-08 Identities = 76/90 (84%) Strand = Plus / Minus Query: 86 tgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacggcagcgagg 145 ||||| ||||| ||| |||||| ||||||||||||||| | || || ||||| | |||| Sbjct: 20910 tgaaggggttcgacgccaccaatgggttcggcttcatcactcccgacaacggcggtgagg 20851 Query: 146 acctcttcgtccaccagtccgccatcaagt 175 ||||||||||||||| |||| || |||||| Sbjct: 20850 acctcttcgtccaccggtcctccctcaagt 20821
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 67.9 bits (34), Expect = 1e-08 Identities = 76/90 (84%) Strand = Plus / Minus Query: 86 tgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacggcagcgagg 145 ||||| ||||| ||| |||||| ||||||||||||||| | || || ||||| | |||| Sbjct: 25916682 tgaaggggttcgacgccaccaatgggttcggcttcatcactcccgacaacggcggtgagg 25916623 Query: 146 acctcttcgtccaccagtccgccatcaagt 175 ||||||||||||||| |||| || |||||| Sbjct: 25916622 acctcttcgtccaccggtcctccctcaagt 25916593
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 65.9 bits (33), Expect = 4e-08 Identities = 54/61 (88%) Strand = Plus / Plus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacggcagc 141 ||||| ||||||||||||| | ||||||| || || |||||||| ||||||||||||||| Sbjct: 1950247 accgtcaagtggttcaacgacgccaagggatttggtttcatctctccggaggacggcagc 1950306 Query: 142 g 142 | Sbjct: 1950307 g 1950307 Score = 46.1 bits (23), Expect = 0.037 Identities = 41/47 (87%) Strand = Plus / Minus Query: 85 gtgaagtggttcaacgtcaccaaggggttcggcttcatctccccgga 131 ||||||||||| |||| ||||||| |||||||||||| ||||||| Sbjct: 2860505 gtgaagtggtttaacgatgccaagggcttcggcttcatcaccccgga 2860459
>gb|AE005954.1| Caulobacter crescentus CB15 section 280 of 359 of the complete genome Length = 10098 Score = 65.9 bits (33), Expect = 4e-08 Identities = 69/81 (85%) Strand = Plus / Minus Query: 79 ggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacggc 138 ||||||||||||||||||||| ||||||||| |||||||||||| || || ||||| Sbjct: 9966 ggaaccgtgaagtggttcaactccaccaagggcttcggcttcatccaacccgacaacggc 9907 Query: 139 agcgaggacctcttcgtccac 159 ||| |||| ||||||||||| Sbjct: 9906 ggcgcggacatcttcgtccac 9886
>gb|AE012228.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 136 of 460 of the complete genome Length = 11820 Score = 65.9 bits (33), Expect = 4e-08 Identities = 54/61 (88%) Strand = Plus / Plus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacggcagc 141 ||||| ||||||||||||| | ||||||| || ||||||||||| ||||| ||||||||| Sbjct: 926 accgtcaagtggttcaacgacgccaagggatttggcttcatctcaccggaagacggcagc 985 Query: 142 g 142 | Sbjct: 986 g 986
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 65.9 bits (33), Expect = 4e-08 Identities = 54/61 (88%) Strand = Plus / Minus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacggcagc 141 ||||| ||||||||||||| | ||||||| || ||||||||||| ||||| ||||||||| Sbjct: 3540661 accgtcaagtggttcaacgacgccaagggatttggcttcatctcaccggaagacggcagc 3540602 Query: 142 g 142 | Sbjct: 3540601 g 3540601 Score = 48.1 bits (24), Expect = 0.009 Identities = 36/40 (90%) Strand = Plus / Minus Query: 84 cgtgaagtggttcaacgtcaccaaggggttcggcttcatc 123 ||||||||||||||||| ||||||| |||||||||||| Sbjct: 3387316 cgtgaagtggttcaacgatgccaagggcttcggcttcatc 3387277 Score = 48.1 bits (24), Expect = 0.009 Identities = 42/48 (87%) Strand = Plus / Plus Query: 84 cgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccgga 131 ||||||||||||||| | ||||||| |||||||||||| ||||||| Sbjct: 2221578 cgtgaagtggttcaatgatgccaagggcttcggcttcatcaccccgga 2221625
>gb|AY157846.2| Chlamydomonas reinhardtii putative nucleic acid binding protein (Nab1) gene, complete cds Length = 4339 Score = 61.9 bits (31), Expect = 6e-07 Identities = 43/47 (91%) Strand = Plus / Plus Query: 77 agggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcatc 123 |||||||||| ||||||||||||| |||||| || |||||||||||| Sbjct: 538 agggaaccgtaaagtggttcaacgccaccaaaggcttcggcttcatc 584
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 60.0 bits (30), Expect = 2e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcatc 123 ||||||||||||||||||| ||||| ||||||||||||||| Sbjct: 548783 accgtgaagtggttcaacgcaaccaaagggttcggcttcatc 548742 Score = 52.0 bits (26), Expect = 6e-04 Identities = 38/42 (90%) Strand = Plus / Plus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcatc 123 |||||||| |||||||||| |||||| || |||||||||||| Sbjct: 624210 accgtgaaatggttcaacgccaccaaaggtttcggcttcatc 624251 Score = 44.1 bits (22), Expect = 0.15 Identities = 64/78 (82%) Strand = Plus / Plus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacggcagc 141 |||||||| ||||||||| || ||||| |||||||||||| |||| || || ||| || Sbjct: 2119532 accgtgaaatggttcaacagtacgaagggcttcggcttcatcgcccccgatgatggcggc 2119591 Query: 142 gaggacctcttcgtccac 159 ||||| | ||||||||| Sbjct: 2119592 aaggacgttttcgtccac 2119609
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 60.0 bits (30), Expect = 2e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 106 aaggggttcggcttcatctccccggaggacggcagcgaggacctcttcgtccac 159 |||||||||||||||||| ||||||| ||||||||| ||| ||||||||||| Sbjct: 2312652 aaggggttcggcttcatcgccccggatgacggcagcaccgacgtcttcgtccac 2312705 Score = 44.1 bits (22), Expect = 0.15 Identities = 22/22 (100%) Strand = Plus / Minus Query: 79 ggaaccgtgaagtggttcaacg 100 |||||||||||||||||||||| Sbjct: 1869038 ggaaccgtgaagtggttcaacg 1869017 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 82 accgtgaagtggttcaacg 100 ||||||||||||||||||| Sbjct: 2506698 accgtgaagtggttcaacg 2506680
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 60.0 bits (30), Expect = 2e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 78 gggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcatc 123 ||||||||||||||||||||||| |||||||| | |||||||||| Sbjct: 3903319 gggaaccgtgaagtggttcaacgcgaccaagggctacggcttcatc 3903364 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 ggaaccgtgaagtggttcaa 98 |||||||||||||||||||| Sbjct: 3613284 ggaaccgtgaagtggttcaa 3613303
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 60.0 bits (30), Expect = 2e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccgga 131 ||||| ||||||||||||| | ||||||| |||||||||||| ||||||| Sbjct: 1679620 accgttaagtggttcaacgacgccaagggcttcggcttcatcaccccgga 1679669 Score = 42.1 bits (21), Expect = 0.58 Identities = 30/33 (90%) Strand = Plus / Plus Query: 91 tggttcaacgtcaccaaggggttcggcttcatc 123 |||||||||| | ||||||| |||||||||||| Sbjct: 2109891 tggttcaacgacgccaagggcttcggcttcatc 2109923
>emb|BX572604.1| Rhodopseudomonas palustris CGA009 complete genome; segment 12/16 Length = 348068 Score = 60.0 bits (30), Expect = 2e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 78 gggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcatc 123 ||||||||||||||||||||||| |||||||| | |||||||||| Sbjct: 306461 gggaaccgtgaagtggttcaacgcgaccaagggctacggcttcatc 306506 Score = 44.1 bits (22), Expect = 0.15 Identities = 22/22 (100%) Strand = Plus / Plus Query: 79 ggaaccgtgaagtggttcaacg 100 |||||||||||||||||||||| Sbjct: 274 ggaaccgtgaagtggttcaacg 295
>gb|DQ122905.1| Chlamydomonas incerta putative nucleic acid-binding protein (nab1) mRNA, partial cds Length = 711 Score = 60.0 bits (30), Expect = 2e-06 Identities = 72/86 (83%) Strand = Plus / Plus Query: 77 agggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacg 136 |||||||||| ||||||||||||| ||| || || |||||||||||| | || | | | Sbjct: 56 agggaaccgtaaagtggttcaacgccactaaaggcttcggcttcatcacgcctggtggtg 115 Query: 137 gcagcgaggacctcttcgtccaccag 162 || ||||||||||||| ||||||||| Sbjct: 116 gcggcgaggacctctttgtccaccag 141
>gb|AE011876.1| Xanthomonas axonopodis pv. citri str. 306, section 254 of 469 of the complete genome Length = 10716 Score = 60.0 bits (30), Expect = 2e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccgga 131 ||||||||||||||||||| ||||||| |||||||||||| ||||||| Sbjct: 6046 accgtgaagtggttcaacgatgccaagggcttcggcttcatcaccccgga 5997
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 60.0 bits (30), Expect = 2e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 78 gggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcatc 123 ||||||||||||||||||||||| |||||||| | |||||||||| Sbjct: 2051855 gggaaccgtgaagtggttcaacgcgaccaagggctacggcttcatc 2051810
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 60.0 bits (30), Expect = 2e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacggcagc 141 ||||||||||||||||||| | | ||||| |||||||||||| ||| ||| ||||| || Sbjct: 296129 accgtgaagtggttcaacgacgcgaagggcttcggcttcatcacccaggacgacggtggc 296070 Query: 142 gaggac 147 |||||| Sbjct: 296069 gaggac 296064 Score = 58.0 bits (29), Expect = 1e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 85 gtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacggcagcgag 144 |||||||||||||| | | | ||||| |||||||||||||||| ||| | ||| ||||| Sbjct: 1475167 gtgaagtggttcaatgacgcgaagggcttcggcttcatctcccaggacggtggcggcgag 1475108 Query: 145 gacctcttcgtccacca 161 ||| | ||||||||||| Sbjct: 1475107 gacgtgttcgtccacca 1475091 Score = 52.0 bits (26), Expect = 6e-04 Identities = 56/66 (84%) Strand = Plus / Minus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacggcagc 141 ||||||||||||||||||| | ||||| |||||||||||| ||| ||| | |||| || Sbjct: 3618871 accgtgaagtggttcaacgatgcgaagggcttcggcttcatcacccaggacggcggcggc 3618812 Query: 142 gaggac 147 |||||| Sbjct: 3618811 gaggac 3618806 Score = 48.1 bits (24), Expect = 0.009 Identities = 45/52 (86%) Strand = Plus / Plus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggagg 133 ||||||||||||||||||| | | ||||| | ||| |||||||||| ||||| Sbjct: 1431466 accgtgaagtggttcaacgacgcgaagggttacggtttcatctcccaggagg 1431517 Score = 44.1 bits (22), Expect = 0.15 Identities = 37/42 (88%) Strand = Plus / Minus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcatc 123 ||||||||||||||||||| | ||||| |||||||||||| Sbjct: 1137017 accgtgaagtggttcaacgatgcgaagggcttcggcttcatc 1136976
>gb|AF098529.1|AF098529 Myxococcus xanthus CspB (cspB) gene, complete cds Length = 825 Score = 60.0 bits (30), Expect = 2e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcatc 123 ||||||||||||||||||| | ||||||||||||| |||||| Sbjct: 245 accgtgaagtggttcaacgacgccaaggggttcggattcatc 286
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence Length = 2107794 Score = 58.0 bits (29), Expect = 1e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 78 gggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcat 122 |||||| ||||||||||||||| ||||||||| ||||||||||| Sbjct: 1450531 gggaacagtgaagtggttcaacaccaccaagggcttcggcttcat 1450575 Score = 42.1 bits (21), Expect = 0.58 Identities = 30/33 (90%) Strand = Plus / Minus Query: 88 aagtggttcaacgtcaccaaggggttcggcttc 120 |||||||||||| ||||||||| ||||||||| Sbjct: 1228943 aagtggttcaaccgcaccaagggtttcggcttc 1228911
>gb|AE009494.1| Brucella melitensis 16M chromosome I, section 51 of 195 of the complete sequence Length = 10029 Score = 58.0 bits (29), Expect = 1e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 78 gggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcat 122 |||||| ||||||||||||||| ||||||||| ||||||||||| Sbjct: 296 gggaacagtgaagtggttcaacaccaccaagggcttcggcttcat 252
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 58.0 bits (29), Expect = 1e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 79 ggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcatc 123 ||||| || ||||||||||||| ||||||||| |||||||||||| Sbjct: 2052416 ggaacggtcaagtggttcaacgccaccaagggcttcggcttcatc 2052460 Score = 42.1 bits (21), Expect = 0.58 Identities = 30/33 (90%) Strand = Plus / Plus Query: 88 aagtggttcaacgtcaccaaggggttcggcttc 120 |||||||||||| ||||||||| ||||||||| Sbjct: 118599 aagtggttcaaccgcaccaagggcttcggcttc 118631
>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence Length = 2124241 Score = 58.0 bits (29), Expect = 1e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 78 gggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcat 122 |||||| ||||||||||||||| ||||||||| ||||||||||| Sbjct: 1468594 gggaacagtgaagtggttcaacaccaccaagggcttcggcttcat 1468638 Score = 42.1 bits (21), Expect = 0.58 Identities = 30/33 (90%) Strand = Plus / Minus Query: 88 aagtggttcaacgtcaccaaggggttcggcttc 120 |||||||||||| ||||||||| ||||||||| Sbjct: 1247052 aagtggttcaaccgcaccaagggtttcggcttc 1247020
>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain 2308 Length = 2121359 Score = 58.0 bits (29), Expect = 1e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 78 gggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcat 122 |||||| ||||||||||||||| ||||||||| ||||||||||| Sbjct: 1465748 gggaacagtgaagtggttcaacaccaccaagggcttcggcttcat 1465792 Score = 42.1 bits (21), Expect = 0.58 Identities = 30/33 (90%) Strand = Plus / Minus Query: 88 aagtggttcaacgtcaccaaggggttcggcttc 120 |||||||||||| ||||||||| ||||||||| Sbjct: 1244202 aagtggttcaaccgcaccaagggtttcggcttc 1244170
>ref|NM_193345.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 531 Score = 54.0 bits (27), Expect = 2e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 109 gggttcggcttcatctccccggaggacggcagcgaggacctcttcgtccaccagtccgcc 168 |||||| |||||||| | || || || ||||||||||| |||||| ||||||||||| || Sbjct: 286 gggttcagcttcatcactcccgacgatggcagcgaggatctcttcatccaccagtcctcc 345 Query: 169 atcaagt 175 |||||| Sbjct: 346 ctcaagt 352
>gb|AF317639.1| Marsilea strigosa microsatellite IIIB8 sequence Length = 430 Score = 54.0 bits (27), Expect = 2e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 85 gtgaagtggttcaacgtcaccaaggggttcggcttcatc 123 ||||||||||||||| ||||||||| |||||||||||| Sbjct: 64 gtgaagtggttcaacagcaccaagggcttcggcttcatc 26
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 54.0 bits (27), Expect = 2e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 88 aagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacggcagcgaggac 147 ||||||||||||| | | ||||| ||||||||||| | ||||| || ||||||||||| Sbjct: 2658257 aagtggttcaacgactcgaagggcttcggcttcattactccggacgatggcagcgaggat 2658316 Query: 148 ctcttcg 154 ||||||| Sbjct: 2658317 ctcttcg 2658323 Score = 44.1 bits (22), Expect = 0.15 Identities = 37/42 (88%) Strand = Plus / Minus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcatc 123 ||||| ||||||||||||| | ||||||| ||||| |||||| Sbjct: 1088053 accgtaaagtggttcaacgactccaagggcttcggtttcatc 1088012 Score = 40.1 bits (20), Expect = 2.3 Identities = 38/44 (86%) Strand = Plus / Minus Query: 88 aagtggttcaacgtcaccaaggggttcggcttcatctccccgga 131 ||||||||||| | | ||||||| ||||| |||||| ||||||| Sbjct: 2055899 aagtggttcaatgactccaagggcttcggtttcatcaccccgga 2055856
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 54.0 bits (27), Expect = 2e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 85 gtgaagtggttcaacgtcaccaaggggttcggcttcatc 123 |||||||||||||||| ||||||||| ||||| |||||| Sbjct: 4757570 gtgaagtggttcaacgccaccaagggcttcggtttcatc 4757608 Score = 42.1 bits (21), Expect = 0.58 Identities = 30/33 (90%) Strand = Plus / Plus Query: 78 gggaaccgtgaagtggttcaacgtcaccaaggg 110 |||||||||||||||||| |||| |||||||| Sbjct: 4127930 gggaaccgtgaagtggtttaacgcgaccaaggg 4127962
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 54.0 bits (27), Expect = 2e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 109 gggttcggcttcatctccccggaggacggcagcgaggacctcttcgtccaccagtccgcc 168 |||||| |||||||| | || || || ||||||||||| |||||| ||||||||||| || Sbjct: 20288751 gggttcagcttcatcactcccgacgatggcagcgaggatctcttcatccaccagtcctcc 20288810 Query: 169 atcaagt 175 |||||| Sbjct: 20288811 ctcaagt 20288817
>dbj|AP004231.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0026J14 Length = 163496 Score = 54.0 bits (27), Expect = 2e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 109 gggttcggcttcatctccccggaggacggcagcgaggacctcttcgtccaccagtccgcc 168 |||||| |||||||| | || || || ||||||||||| |||||| ||||||||||| || Sbjct: 54784 gggttcagcttcatcactcccgacgatggcagcgaggatctcttcatccaccagtcctcc 54843 Query: 169 atcaagt 175 |||||| Sbjct: 54844 ctcaagt 54850
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 54.0 bits (27), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 88 aagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacggcagcgaggac 147 ||||||| ||||| ||| ||||| |||||||||||| ||||||| |||| || ||||| Sbjct: 69712 aagtggtacaacgccacgaagggcttcggcttcatcaccccggaatccggcggcaaggac 69771 Query: 148 ctcttcgtcca 158 |||||||||| Sbjct: 69772 atcttcgtcca 69782 Score = 40.1 bits (20), Expect = 2.3 Identities = 32/36 (88%) Strand = Plus / Minus Query: 88 aagtggttcaacgtcaccaaggggttcggcttcatc 123 ||||||||||||| ||| ||||| ||||| |||||| Sbjct: 903515 aagtggttcaacgccacgaagggcttcggtttcatc 903480
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 52.0 bits (26), Expect = 6e-04 Identities = 41/46 (89%) Strand = Plus / Minus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcatctccc 127 ||||| |||||||||||| | ||||||| |||||||||||||||| Sbjct: 1589861 accgtaaagtggttcaacacctccaagggcttcggcttcatctccc 1589816
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 52.0 bits (26), Expect = 6e-04 Identities = 38/42 (90%) Strand = Plus / Minus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcatc 123 ||||| ||||||||||||| | ||||||| |||||||||||| Sbjct: 579528 accgttaagtggttcaacgacgccaagggcttcggcttcatc 579487 Score = 46.1 bits (23), Expect = 0.037 Identities = 32/35 (91%) Strand = Plus / Minus Query: 88 aagtggttcaacgtcaccaaggggttcggcttcat 122 ||||||||||||| |||||||| ||||||||||| Sbjct: 2435328 aagtggttcaacgagaccaagggtttcggcttcat 2435294 Score = 40.1 bits (20), Expect = 2.3 Identities = 32/36 (88%) Strand = Plus / Plus Query: 88 aagtggttcaacgtcaccaaggggttcggcttcatc 123 ||||||||||||| | ||||||| || ||||||||| Sbjct: 2432261 aagtggttcaacgacgccaagggctttggcttcatc 2432296
>gb|AC084622.1|CBRG44P20 Caenorhabditis briggsae cosmid G44P20, complete sequence Length = 39166 Score = 52.0 bits (26), Expect = 6e-04 Identities = 29/30 (96%) Strand = Plus / Plus Query: 72 ggtcaagggaaccgtgaagtggttcaacgt 101 ||||||||||||||| |||||||||||||| Sbjct: 23189 ggtcaagggaaccgtcaagtggttcaacgt 23218
>gb|AF281675.1|AF281675 Mycobacterium smegmatis cold-shock protein CspA (cspA) gene, complete cds Length = 204 Score = 52.0 bits (26), Expect = 6e-04 Identities = 53/62 (85%) Strand = Plus / Plus Query: 77 agggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacg 136 ||||||| |||||||||||||||| ||||| |||||||||||| |||| ||||||| Sbjct: 8 agggaactgtgaagtggttcaacgcggagaagggcttcggcttcatcgcccccgaggacg 67 Query: 137 gc 138 || Sbjct: 68 gc 69
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 52.0 bits (26), Expect = 6e-04 Identities = 41/46 (89%) Strand = Plus / Minus Query: 78 gggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcatc 123 |||||||||||||||||| |||| |||||||| || ||||||||| Sbjct: 1576785 gggaaccgtgaagtggtttaacgcgaccaagggctttggcttcatc 1576740
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 52.0 bits (26), Expect = 6e-04 Identities = 53/62 (85%) Strand = Plus / Plus Query: 77 agggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacg 136 ||||||| |||||||||||||||| |||||||||||||||||| | || ||||||| Sbjct: 379282 agggaactgtgaagtggttcaacgcggagaaggggttcggcttcatcgcgcccgaggacg 379341 Query: 137 gc 138 || Sbjct: 379342 gc 379343 Score = 40.1 bits (20), Expect = 2.3 Identities = 35/40 (87%) Strand = Plus / Minus Query: 84 cgtgaagtggttcaacgtcaccaaggggttcggcttcatc 123 ||||||||||||||||| | ||||| |||||||||||| Sbjct: 3641681 cgtgaagtggttcaacggcgagaagggcttcggcttcatc 3641642
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 52.0 bits (26), Expect = 6e-04 Identities = 41/46 (89%) Strand = Plus / Plus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcatctccc 127 |||||||||||||||||| | | ||||| |||||||||||||||| Sbjct: 4395536 accgtgaagtggttcaacacctcgaagggcttcggcttcatctccc 4395581
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 52.0 bits (26), Expect = 6e-04 Identities = 68/82 (82%) Strand = Plus / Plus Query: 77 agggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacg 136 ||||||| ||||| |||||||||| ||||| |||||||||||| |||| || |||| Sbjct: 691504 agggaactgtgaaatggttcaacggtgaaaagggcttcggcttcatcacccctgacgacg 691563 Query: 137 gcagcgaggacctcttcgtcca 158 ||| |||||||||||||||| Sbjct: 691564 gcacgaaggacctcttcgtcca 691585 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 77 agggaaccgtgaagtggttcaacg 100 ||||||| |||||||||||||||| Sbjct: 448253 agggaactgtgaagtggttcaacg 448276
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 50.1 bits (25), Expect = 0.002 Identities = 40/45 (88%) Strand = Plus / Minus Query: 78 gggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcat 122 |||||||||||||||||| |||| |||||||| | ||||||||| Sbjct: 350436 gggaaccgtgaagtggtttaacgcaaccaagggctacggcttcat 350392
>gb|AY316746.1| Rhizobium sp. NGR234 megaplasmid 2 contig 2, complete sequence Length = 236455 Score = 50.1 bits (25), Expect = 0.002 Identities = 37/41 (90%) Strand = Plus / Plus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcat 122 ||||| |||||||||||| ||||||||| ||||||||||| Sbjct: 90020 accgtaaagtggttcaacagcaccaagggcttcggcttcat 90060
>emb|AL591789.1|SME591789 Sinorhizobium meliloti 1021 complete chromosome; segment 8/12 Length = 294800 Score = 50.1 bits (25), Expect = 0.002 Identities = 37/41 (90%) Strand = Plus / Plus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcat 122 ||||| |||||||||||| ||||||||| ||||||||||| Sbjct: 134331 accgtaaagtggttcaacagcaccaagggcttcggcttcat 134371 Score = 42.1 bits (21), Expect = 0.58 Identities = 39/45 (86%) Strand = Plus / Minus Query: 79 ggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcatc 123 ||||| || |||||||||||| ||||||||| ||||| |||||| Sbjct: 185181 ggaacggtaaagtggttcaacagcaccaagggcttcggtttcatc 185137
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 50.1 bits (25), Expect = 0.002 Identities = 40/45 (88%) Strand = Plus / Minus Query: 78 gggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcat 122 |||||||||||||||||| |||| |||||||| | ||||||||| Sbjct: 439414 gggaaccgtgaagtggtttaacgcgaccaagggctacggcttcat 439370 Score = 42.1 bits (21), Expect = 0.58 Identities = 36/41 (87%) Strand = Plus / Minus Query: 79 ggaaccgtgaagtggttcaacgtcaccaaggggttcggctt 119 ||||| |||||||||||||||| || ||||| |||||||| Sbjct: 2791626 ggaacagtgaagtggttcaacgcgacaaagggcttcggctt 2791586 Score = 42.1 bits (21), Expect = 0.58 Identities = 36/41 (87%) Strand = Plus / Minus Query: 79 ggaaccgtgaagtggttcaacgtcaccaaggggttcggctt 119 ||||| |||||||||||||||| || ||||| |||||||| Sbjct: 894163 ggaacagtgaagtggttcaacgcgacaaagggcttcggctt 894123
>gb|AF030523.1|AF030523 Sinorhizobium meliloti putative periplasmic iron-binding protein (afuA), cold shock protein CspA (cspA), and probable ribosomal protein (rpsU) genes, complete cds Length = 2489 Score = 50.1 bits (25), Expect = 0.002 Identities = 37/41 (90%) Strand = Plus / Plus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcat 122 ||||| |||||||||||| ||||||||| ||||||||||| Sbjct: 1392 accgtaaagtggttcaacagcaccaagggcttcggcttcat 1432
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 50.1 bits (25), Expect = 0.002 Identities = 61/73 (83%) Strand = Plus / Plus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacggcagc 141 ||||| ||||||||||||| | | ||||| |||||||| || ||||||| || ||| || Sbjct: 1334923 accgtcaagtggttcaacgacgctaagggtttcggctttattaccccggatgaaggcggc 1334982 Query: 142 gaggacctcttcg 154 |||||||| |||| Sbjct: 1334983 gaggaccttttcg 1334995
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 48.1 bits (24), Expect = 0.009 Identities = 54/64 (84%) Strand = Plus / Plus Query: 91 tggttcaacgtcaccaaggggttcggcttcatctccccggaggacggcagcgaggacctc 150 |||||||||| |||||| || | |||||||||||| ||||| || || |||| |||||| Sbjct: 2811734 tggttcaacgacaccaaaggctacggcttcatctctccggatgatggtggcgatgacctc 2811793 Query: 151 ttcg 154 |||| Sbjct: 2811794 ttcg 2811797 Score = 38.2 bits (19), Expect = 9.0 Identities = 34/39 (87%) Strand = Plus / Plus Query: 85 gtgaagtggttcaacgtcaccaaggggttcggcttcatc 123 ||||| ||||||||||||| |||||| | ||| |||||| Sbjct: 616966 gtgaaatggttcaacgtcaacaagggctacggtttcatc 617004
>gb|AE009135.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 161 of 256 of the complete sequence Length = 11907 Score = 48.1 bits (24), Expect = 0.009 Identities = 36/40 (90%) Strand = Plus / Plus Query: 84 cgtgaagtggttcaacgtcaccaaggggttcggcttcatc 123 |||||| |||||| ||||| ||||||| |||||||||||| Sbjct: 8495 cgtgaaatggttcgacgtcgccaagggtttcggcttcatc 8534
>gb|AE012336.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 244 of 460 of the complete genome Length = 10286 Score = 48.1 bits (24), Expect = 0.009 Identities = 42/48 (87%) Strand = Plus / Minus Query: 84 cgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccgga 131 ||||||||||||||| | ||||||| |||||||||||| ||||||| Sbjct: 4466 cgtgaagtggttcaatgatgccaagggcttcggcttcatcaccccgga 4419
>gb|AE012242.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 150 of 460 of the complete genome Length = 10405 Score = 48.1 bits (24), Expect = 0.009 Identities = 36/40 (90%) Strand = Plus / Plus Query: 84 cgtgaagtggttcaacgtcaccaaggggttcggcttcatc 123 ||||||||||||||||| ||||||| |||||||||||| Sbjct: 2162 cgtgaagtggttcaacgatgccaagggcttcggcttcatc 2201
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 48.1 bits (24), Expect = 0.009 Identities = 33/36 (91%) Strand = Plus / Plus Query: 88 aagtggttcaacgtcaccaaggggttcggcttcatc 123 ||||||||| ||||| ||||||| |||||||||||| Sbjct: 1968616 aagtggttcgacgtcgccaagggcttcggcttcatc 1968651 Score = 46.1 bits (23), Expect = 0.037 Identities = 32/35 (91%) Strand = Plus / Plus Query: 88 aagtggttcaacgtcaccaaggggttcggcttcat 122 ||||||||||||| |||||||| ||||||||||| Sbjct: 582446 aagtggttcaacgcaaccaagggcttcggcttcat 582480 Score = 40.1 bits (20), Expect = 2.3 Identities = 32/36 (88%) Strand = Plus / Plus Query: 88 aagtggttcaacgtcaccaaggggttcggcttcatc 123 ||||||||||| | ||||||||| || ||||||||| Sbjct: 1224150 aagtggttcaatggcaccaagggttttggcttcatc 1224185
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 48.1 bits (24), Expect = 0.009 Identities = 36/40 (90%) Strand = Plus / Plus Query: 84 cgtgaagtggttcaacgtcaccaaggggttcggcttcatc 123 |||||| |||||| ||||| ||||||| |||||||||||| Sbjct: 1788340 cgtgaaatggttcgacgtcgccaagggtttcggcttcatc 1788379 Score = 38.2 bits (19), Expect = 9.0 Identities = 31/35 (88%) Strand = Plus / Plus Query: 88 aagtggttcaacgtcaccaaggggttcggcttcat 122 ||||||||||||| |||||||| | ||||||||| Sbjct: 109640 aagtggttcaacgcaaccaagggctacggcttcat 109674
>dbj|AP005442.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0073I05 Length = 182291 Score = 48.1 bits (24), Expect = 0.009 Identities = 30/32 (93%) Strand = Plus / Plus Query: 134 acggcagcgaggacctcttcgtccaccagtcc 165 ||||| |||||||||||||||||||| ||||| Sbjct: 39548 acggcggcgaggacctcttcgtccactagtcc 39579
>dbj|AP004589.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0556A11 Length = 138096 Score = 48.1 bits (24), Expect = 0.009 Identities = 30/32 (93%) Strand = Plus / Plus Query: 134 acggcagcgaggacctcttcgtccaccagtcc 165 ||||| |||||||||||||||||||| ||||| Sbjct: 106583 acggcggcgaggacctcttcgtccactagtcc 106614
>ref|NM_120029.2| Arabidopsis thaliana GRP2; nucleic acid binding AT4G38680 (GRP2) mRNA, complete cds Length = 1299 Score = 46.1 bits (23), Expect = 0.037 Identities = 56/67 (83%) Strand = Plus / Plus Query: 106 aaggggttcggcttcatctccccggaggacggcagcgaggacctcttcgtccaccagtcc 165 ||||| |||||||||||| | || || ||||| |||| || |||||||| ||||||||| Sbjct: 395 aagggtttcggcttcatcactcctgacgacggtggcgacgatctcttcgttcaccagtcc 454 Query: 166 gccatca 172 |||||| Sbjct: 455 tccatca 461
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 46.1 bits (23), Expect = 0.037 Identities = 41/47 (87%) Strand = Plus / Plus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcatctcccc 128 ||||| ||||||||||||| |||||||| || || ||||||||||| Sbjct: 1641277 accgtcaagtggttcaacgaaaccaagggctttggtttcatctcccc 1641323
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 46.1 bits (23), Expect = 0.037 Identities = 35/39 (89%) Strand = Plus / Plus Query: 84 cgtgaagtggttcaacgtcaccaaggggttcggcttcat 122 ||||||||||||||||| | ||||||| | ||||||||| Sbjct: 1256698 cgtgaagtggttcaacgacgccaagggctacggcttcat 1256736
>gb|AE009243.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 13 of 187 of the complete sequence Length = 11036 Score = 46.1 bits (23), Expect = 0.037 Identities = 32/35 (91%) Strand = Plus / Plus Query: 88 aagtggttcaacgtcaccaaggggttcggcttcat 122 |||||||| |||| ||||||||| ||||||||||| Sbjct: 164 aagtggtttaacgccaccaagggcttcggcttcat 198
>gb|AE008371.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 175 of 187 of the complete sequence Length = 11967 Score = 46.1 bits (23), Expect = 0.037 Identities = 32/35 (91%) Strand = Plus / Minus Query: 88 aagtggttcaacgtcaccaaggggttcggcttcat 122 |||||||| |||| ||||||||| ||||||||||| Sbjct: 1308 aagtggtttaacgccaccaagggcttcggcttcat 1274
>gb|AY040049.1| Arabidopsis thaliana putative glycine-rich protein 2 (At4g38680) mRNA, complete cds Length = 612 Score = 46.1 bits (23), Expect = 0.037 Identities = 56/67 (83%) Strand = Plus / Plus Query: 106 aaggggttcggcttcatctccccggaggacggcagcgaggacctcttcgtccaccagtcc 165 ||||| |||||||||||| | || || ||||| |||| || |||||||| ||||||||| Sbjct: 64 aagggtttcggcttcatcactcctgacgacggtggcgacgatctcttcgttcaccagtcc 123 Query: 166 gccatca 172 |||||| Sbjct: 124 tccatca 130
>gb|AF360202.1| Arabidopsis thaliana putative glycine-rich protein GRP2 (At4g38680) mRNA, complete cds Length = 929 Score = 46.1 bits (23), Expect = 0.037 Identities = 56/67 (83%) Strand = Plus / Plus Query: 106 aaggggttcggcttcatctccccggaggacggcagcgaggacctcttcgtccaccagtcc 165 ||||| |||||||||||| | || || ||||| |||| || |||||||| ||||||||| Sbjct: 138 aagggtttcggcttcatcactcctgacgacggtggcgacgatctcttcgttcaccagtcc 197 Query: 166 gccatca 172 |||||| Sbjct: 198 tccatca 204
>emb|BX248354.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment 1/8 Length = 348517 Score = 46.1 bits (23), Expect = 0.037 Identities = 68/83 (81%) Strand = Plus / Plus Query: 77 agggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacg 136 ||||||| |||||||||||||||| || || |||||||||||| | |||||||||| Sbjct: 285659 agggaactgtgaagtggttcaacgctgaaaaaggtttcggcttcatcgctccggaggacg 285718 Query: 137 gcagcgaggacctcttcgtccac 159 || || ||| ||||||||||| Sbjct: 285719 gctccgctgacgtcttcgtccac 285741
>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29 Length = 248550 Score = 46.1 bits (23), Expect = 0.037 Identities = 77/95 (81%) Strand = Plus / Minus Query: 79 ggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacggc 138 |||||||||||||||||||||| | ||||| || || |||||| ||| ||| | |||| Sbjct: 96494 ggaaccgtgaagtggttcaacgccgaaaagggctttggtttcatcgcccaggaaggcggc 96435 Query: 139 agcgaggacctcttcgtccaccagtccgccatcaa 173 || |||| ||||||||||| | ||||| ||||| Sbjct: 96434 ggcccggacgtcttcgtccactactccgcgatcaa 96400
>emb|AL161593.2|ATCHRIV89 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 89 Length = 199789 Score = 46.1 bits (23), Expect = 0.037 Identities = 56/67 (83%) Strand = Plus / Minus Query: 106 aaggggttcggcttcatctccccggaggacggcagcgaggacctcttcgtccaccagtcc 165 ||||| |||||||||||| | || || ||||| |||| || |||||||| ||||||||| Sbjct: 181730 aagggtttcggcttcatcactcctgacgacggtggcgacgatctcttcgttcaccagtcc 181671 Query: 166 gccatca 172 |||||| Sbjct: 181670 tccatca 181664
>emb|AL035656.1|ATT9A14 Arabidopsis thaliana DNA chromosome 4, BAC clone T9A14 (ESSA project) Length = 88164 Score = 46.1 bits (23), Expect = 0.037 Identities = 56/67 (83%) Strand = Plus / Minus Query: 106 aaggggttcggcttcatctccccggaggacggcagcgaggacctcttcgtccaccagtcc 165 ||||| |||||||||||| | || || ||||| |||| || |||||||| ||||||||| Sbjct: 19357 aagggtttcggcttcatcactcctgacgacggtggcgacgatctcttcgttcaccagtcc 19298 Query: 166 gccatca 172 |||||| Sbjct: 19297 tccatca 19291
>gb|AY133591.1| Arabidopsis thaliana AT4g38680/F20M13_240 mRNA, complete cds Length = 612 Score = 46.1 bits (23), Expect = 0.037 Identities = 56/67 (83%) Strand = Plus / Plus Query: 106 aaggggttcggcttcatctccccggaggacggcagcgaggacctcttcgtccaccagtcc 165 ||||| |||||||||||| | || || ||||| |||| || |||||||| ||||||||| Sbjct: 64 aagggtttcggcttcatcactcctgacgacggtggcgacgatctcttcgttcaccagtcc 123 Query: 166 gccatca 172 |||||| Sbjct: 124 tccatca 130
>gb|S47408.1| glycine-rich protein {clone atGRP-2} [Arabidopsis thaliana, C24, mRNA, 965 nt] Length = 965 Score = 46.1 bits (23), Expect = 0.037 Identities = 56/67 (83%) Strand = Plus / Plus Query: 106 aaggggttcggcttcatctccccggaggacggcagcgaggacctcttcgtccaccagtcc 165 ||||| |||||||||||| | || || ||||| |||| || |||||||| ||||||||| Sbjct: 119 aagggtttcggcttcatcactcctgacgacggtggcgacgatctcttcgttcaccagtcc 178 Query: 166 gccatca 172 |||||| Sbjct: 179 tccatca 185
>gb|AF385696.1|AF385696 Arabidopsis thaliana AT4g38680/F20M13_240 mRNA, complete cds Length = 1089 Score = 46.1 bits (23), Expect = 0.037 Identities = 56/67 (83%) Strand = Plus / Plus Query: 106 aaggggttcggcttcatctccccggaggacggcagcgaggacctcttcgtccaccagtcc 165 ||||| |||||||||||| | || || ||||| |||| || |||||||| ||||||||| Sbjct: 394 aagggtttcggcttcatcactcctgacgacggtggcgacgatctcttcgttcaccagtcc 453 Query: 166 gccatca 172 |||||| Sbjct: 454 tccatca 460
>gb|AC160211.1| Genomic seqeunce for Zea mays BAC clone ZMMBBb0448F23, complete sequence Length = 132549 Score = 46.1 bits (23), Expect = 0.037 Identities = 26/27 (96%) Strand = Plus / Minus Query: 129 ggaggacggcagcgaggacctcttcgt 155 ||||||||| ||||||||||||||||| Sbjct: 1716 ggaggacgggagcgaggacctcttcgt 1690
>gb|AC069327.7|AC069327 Genomic Sequence For Arabidopsis thaliana Clone T26G08 From Chromosome IV, complete sequence Length = 94770 Score = 46.1 bits (23), Expect = 0.037 Identities = 56/67 (83%) Strand = Plus / Plus Query: 106 aaggggttcggcttcatctccccggaggacggcagcgaggacctcttcgtccaccagtcc 165 ||||| |||||||||||| | || || ||||| |||| || |||||||| ||||||||| Sbjct: 61546 aagggtttcggcttcatcactcctgacgacggtggcgacgatctcttcgttcaccagtcc 61605 Query: 166 gccatca 172 |||||| Sbjct: 61606 tccatca 61612
>gb|AC157487.1| Genomic sequence for Zea mays clone ZMMBBb0614J24, from chromosome 8, complete sequence Length = 136932 Score = 46.1 bits (23), Expect = 0.037 Identities = 26/27 (96%) Strand = Plus / Minus Query: 129 ggaggacggcagcgaggacctcttcgt 155 ||||||||| ||||||||||||||||| Sbjct: 90037 ggaggacgggagcgaggacctcttcgt 90011
>emb|AL035540.1|ATF20M13 Arabidopsis thaliana DNA chromosome 4, BAC clone F20M13 (ESSA project) Length = 91938 Score = 46.1 bits (23), Expect = 0.037 Identities = 56/67 (83%) Strand = Plus / Minus Query: 106 aaggggttcggcttcatctccccggaggacggcagcgaggacctcttcgtccaccagtcc 165 ||||| |||||||||||| | || || ||||| |||| || |||||||| ||||||||| Sbjct: 82671 aagggtttcggcttcatcactcctgacgacggtggcgacgatctcttcgttcaccagtcc 82612 Query: 166 gccatca 172 |||||| Sbjct: 82611 tccatca 82605
>gb|L41167.1|ARGCSP Arthrobacter globiformis strain SI55 cold shock protein (CSP) gene, complete cds Length = 914 Score = 46.1 bits (23), Expect = 0.037 Identities = 47/55 (85%) Strand = Plus / Plus Query: 77 agggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccgga 131 |||||||||| ||||||||||||| ||||| |||||||||||| ||||||| Sbjct: 310 agggaaccgtcaagtggttcaacgctgaaaagggcttcggcttcatcaccccgga 364
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 44.1 bits (22), Expect = 0.15 Identities = 43/50 (86%) Strand = Plus / Minus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccgga 131 ||||| ||||||||||| | | | ||||| |||||||||||| ||||||| Sbjct: 464543 accgtcaagtggttcaatgacgcaaagggcttcggcttcatcaccccgga 464494
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 44.1 bits (22), Expect = 0.15 Identities = 37/42 (88%) Strand = Plus / Plus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcatc 123 |||||||| |||||||||| || || ||||||||||||||| Sbjct: 733316 accgtgaaatggttcaacgcaactaaagggttcggcttcatc 733357
>gb|AY658323.1| Synthetic construct Peudomonas aeruginosa clone FLH044127.01F PA3266 gene, partial cds Length = 210 Score = 44.1 bits (22), Expect = 0.15 Identities = 43/50 (86%) Strand = Plus / Plus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccgga 131 ||||| || |||||||||| | |||| || |||||||||||| ||||||| Sbjct: 22 accgtaaaatggttcaacgacgccaaaggcttcggcttcatcaccccgga 71
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 44.1 bits (22), Expect = 0.15 Identities = 37/42 (88%) Strand = Plus / Minus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcatc 123 ||||| ||||||||||||| |||||||| || ||||||||| Sbjct: 547592 accgtcaagtggttcaacgagaccaagggttttggcttcatc 547551
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 44.1 bits (22), Expect = 0.15 Identities = 40/46 (86%) Strand = Plus / Plus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcatctccc 127 ||||| |||||||||||| | ||||||| |||||||| ||||||| Sbjct: 4329135 accgtaaagtggttcaacacctccaagggcttcggctttatctccc 4329180
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 44.1 bits (22), Expect = 0.15 Identities = 43/50 (86%) Strand = Plus / Minus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccgga 131 ||||| ||||||||||||| || ||| || || ||||||||| ||||||| Sbjct: 285259 accgttaagtggttcaacgacagcaaaggctttggcttcatcaccccgga 285210
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 44.1 bits (22), Expect = 0.15 Identities = 37/42 (88%) Strand = Plus / Minus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcatc 123 ||||| ||||||||||||| |||||||| || ||||||||| Sbjct: 1866879 accgtcaagtggttcaacgagaccaagggttttggcttcatc 1866838
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29 Length = 309050 Score = 44.1 bits (22), Expect = 0.15 Identities = 37/42 (88%) Strand = Plus / Plus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcatc 123 ||||||||||||||||||| | ||||| |||||||||||| Sbjct: 187402 accgtgaagtggttcaacgccgaaaagggcttcggcttcatc 187443 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 82 accgtgaagtggttcaacg 100 ||||||||||||||||||| Sbjct: 201198 accgtgaagtggttcaacg 201180
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 44.1 bits (22), Expect = 0.15 Identities = 40/46 (86%) Strand = Plus / Plus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcatctccc 127 |||||||||||||||||| | ||||||| ||||| || ||||||| Sbjct: 5507635 accgtgaagtggttcaacacctccaagggcttcggttttatctccc 5507680 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 131 aggacggcagcgaggacct 149 ||||||||||||||||||| Sbjct: 2389937 aggacggcagcgaggacct 2389955 Score = 38.2 bits (19), Expect = 9.0 Identities = 25/27 (92%) Strand = Plus / Plus Query: 84 cgtgaagtggttcaacgtcaccaaggg 110 ||||||||||||||||| | ||||||| Sbjct: 1331060 cgtgaagtggttcaacgacgccaaggg 1331086
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 44.1 bits (22), Expect = 0.15 Identities = 37/42 (88%) Strand = Plus / Plus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcatc 123 ||||| ||||||||||||| |||||||| || ||||||||| Sbjct: 916421 accgtcaagtggttcaacgagaccaagggttttggcttcatc 916462
>gb|AE004749.1| Pseudomonas aeruginosa PAO1, section 310 of 529 of the complete genome Length = 16841 Score = 44.1 bits (22), Expect = 0.15 Identities = 43/50 (86%) Strand = Plus / Plus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccgga 131 ||||| || |||||||||| | |||| || |||||||||||| ||||||| Sbjct: 1699 accgtaaaatggttcaacgacgccaaaggcttcggcttcatcaccccgga 1748
>gb|AF098532.1|AF098532 Myxococcus xanthus CspE (cspE) gene, complete cds Length = 1067 Score = 44.1 bits (22), Expect = 0.15 Identities = 37/42 (88%) Strand = Plus / Plus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcatc 123 ||||||||||||||||||| | | ||||| || ||||||||| Sbjct: 529 accgtgaagtggttcaacgacgcgaagggctttggcttcatc 570
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 44.1 bits (22), Expect = 0.15 Identities = 34/38 (89%) Strand = Plus / Plus Query: 88 aagtggttcaacgtcaccaaggggttcggcttcatctc 125 ||||||||||||| | ||||||| || ||||||||||| Sbjct: 2675430 aagtggttcaacgacgccaagggttttggcttcatctc 2675467
>gb|U82822.1|PAU82822 Pseudomonas aeruginosa major cold shock protein CspA (cspA) gene, complete cds Length = 508 Score = 44.1 bits (22), Expect = 0.15 Identities = 43/50 (86%) Strand = Plus / Plus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccgga 131 ||||| || |||||||||| | |||| || |||||||||||| ||||||| Sbjct: 262 accgtaaaatggttcaacgacgccaaaggcttcggcttcatcaccccgga 311
>gb|AC160245.2| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940136D9, complete sequence Length = 121820 Score = 42.1 bits (21), Expect = 0.58 Identities = 48/57 (84%) Strand = Plus / Minus Query: 84 cgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacggcag 140 |||||||||||||||| | |||||||||||||||||| | || || |||||||| Sbjct: 66072 cgtgaagtggttcaactccgagaaggggttcggcttcatcgctcccgaagacggcag 66016
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 0.58 Identities = 60/73 (82%) Strand = Plus / Minus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacggcagc 141 ||||| ||||||||||||| | ||||||| || || |||||| | ||||| | |||| || Sbjct: 2881730 accgtcaagtggttcaacgacgccaagggttttggtttcatcacgccggaaggcggcggc 2881671 Query: 142 gaggacctcttcg 154 || || ||||||| Sbjct: 2881670 gaagatctcttcg 2881658
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 42.1 bits (21), Expect = 0.58 Identities = 51/61 (83%) Strand = Plus / Minus Query: 77 agggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacg 136 ||||||| |||||||||||||||| |||||||||||||| ||| |||| || |||| Sbjct: 4080766 agggaactgtgaagtggttcaacgcggagaaggggttcggctttatcgcccccgaagacg 4080707 Query: 137 g 137 | Sbjct: 4080706 g 4080706
>ref|XM_588880.2| PREDICTED: Bos taurus similar to RNA-binding protein LIN-28 (LOC539705), mRNA Length = 606 Score = 42.1 bits (21), Expect = 0.58 Identities = 30/33 (90%) Strand = Plus / Plus Query: 88 aagtggttcaacgtcaccaaggggttcggcttc 120 |||||||||||||| ||| ||||||||||||| Sbjct: 109 aagtggttcaacgtgcccatggggttcggcttc 141
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 0.58 Identities = 60/73 (82%) Strand = Plus / Plus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacggcagc 141 ||||| ||||||||||||| | ||||||| || || |||||| | ||||| | |||| || Sbjct: 3931685 accgtcaagtggttcaacgacgccaagggttttggtttcatcacgccggaaggcggcggc 3931744 Query: 142 gaggacctcttcg 154 || || ||||||| Sbjct: 3931745 gaagatctcttcg 3931757
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 42.1 bits (21), Expect = 0.58 Identities = 51/61 (83%) Strand = Plus / Minus Query: 77 agggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacg 136 |||||||||| ||||||||||||| ||||| || ||||||||| ||||||| |||| Sbjct: 2283249 agggaaccgtcaagtggttcaacgcggagaagggctttggcttcatcgccccggacgacg 2283190 Query: 137 g 137 | Sbjct: 2283189 g 2283189
>emb|AL591788.1|SME591788 Sinorhizobium meliloti 1021 complete chromosome; segment 7/12 Length = 306250 Score = 42.1 bits (21), Expect = 0.58 Identities = 33/37 (89%) Strand = Plus / Minus Query: 84 cgtgaagtggttcaacgtcaccaaggggttcggcttc 120 |||||||||||||||| |||||||| ||||||||| Sbjct: 77836 cgtgaagtggttcaaccgaaccaagggattcggcttc 77800 Score = 40.1 bits (20), Expect = 2.3 Identities = 32/36 (88%) Strand = Plus / Minus Query: 88 aagtggttcaacgtcaccaaggggttcggcttcatc 123 ||||||||| |||| ||||||| |||||||||||| Sbjct: 78108 aagtggttcgacgttgccaagggtttcggcttcatc 78073
>emb|BX842583.1| Mycobacterium tuberculosis H37Rv complete genome; segment 12/13 Length = 349606 Score = 42.1 bits (21), Expect = 0.58 Identities = 51/61 (83%) Strand = Plus / Minus Query: 77 agggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacg 136 ||||||| |||||||||||||||| |||||||||||||| ||| |||| || |||| Sbjct: 271348 agggaactgtgaagtggttcaacgcggagaaggggttcggctttatcgcccccgaagacg 271289 Query: 137 g 137 | Sbjct: 271288 g 271288
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 0.58 Identities = 60/73 (82%) Strand = Plus / Plus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacggcagc 141 ||||| ||||||||||||| | ||||||| || || |||||| | ||||| | |||| || Sbjct: 3673631 accgtcaagtggttcaacgacgccaagggttttggtttcatcacgccggaaggcggcggc 3673690 Query: 142 gaggacctcttcg 154 || || ||||||| Sbjct: 3673691 gaagatctcttcg 3673703
>emb|BX248346.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 13/14 Length = 316050 Score = 42.1 bits (21), Expect = 0.58 Identities = 51/61 (83%) Strand = Plus / Minus Query: 77 agggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacg 136 ||||||| |||||||||||||||| |||||||||||||| ||| |||| || |||| Sbjct: 274761 agggaactgtgaagtggttcaacgcggagaaggggttcggctttatcgcccccgaagacg 274702 Query: 137 g 137 | Sbjct: 274701 g 274701
>emb|AL672112.1|MLO672112 Mesorhizobium loti R7A symbiosis island; segment 1/4 Length = 150050 Score = 42.1 bits (21), Expect = 0.58 Identities = 39/45 (86%) Strand = Plus / Minus Query: 79 ggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcatc 123 ||||| ||||||||||||||| |||||| || || ||||||||| Sbjct: 74107 ggaacagtgaagtggttcaacagcaccaaaggttttggcttcatc 74063
>emb|AL583917.1|MLEPRTN1 Mycobacterium leprae strain TN complete genome; segment 1/10 Length = 344050 Score = 42.1 bits (21), Expect = 0.58 Identities = 51/61 (83%) Strand = Plus / Plus Query: 77 agggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacg 136 ||||||| |||||||||||||||| |||||||||||||| ||| |||| || |||| Sbjct: 264905 agggaactgtgaagtggttcaacgcggagaaggggttcggctttatcgcccccgaagacg 264964 Query: 137 g 137 | Sbjct: 264965 g 264965
>emb|AL023093.1|MLCB2548 Mycobacterium leprae cosmid B2548 Length = 38916 Score = 42.1 bits (21), Expect = 0.58 Identities = 51/61 (83%) Strand = Plus / Minus Query: 77 agggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacg 136 ||||||| |||||||||||||||| |||||||||||||| ||| |||| || |||| Sbjct: 37133 agggaactgtgaagtggttcaacgcggagaaggggttcggctttatcgcccccgaagacg 37074 Query: 137 g 137 | Sbjct: 37073 g 37073
>emb|BX470161.8| Zebrafish DNA sequence from clone RP71-84I2, complete sequence Length = 197615 Score = 42.1 bits (21), Expect = 0.58 Identities = 30/33 (90%) Strand = Plus / Plus Query: 88 aagtggttcaacgtcaccaaggggttcggcttc 120 |||||||||||| ||||||||| ||||||||| Sbjct: 114597 aagtggttcaaccgcaccaagggtttcggcttc 114629
>gb|AE005742.1| Caulobacter crescentus CB15 section 68 of 359 of the complete genome Length = 12842 Score = 42.1 bits (21), Expect = 0.58 Identities = 36/41 (87%) Strand = Plus / Plus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcat 122 ||||| ||||||||||||| | ||||||| || |||||||| Sbjct: 7272 accgtaaagtggttcaacgccgccaagggctttggcttcat 7312
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 42.1 bits (21), Expect = 0.58 Identities = 57/69 (82%) Strand = Plus / Minus Query: 91 tggttcaacgtcaccaaggggttcggcttcatctccccggaggacggcagcgaggacctc 150 ||||||||| |||||| || || || |||||| ||||||| |||||| || | ||| || Sbjct: 1056420 tggttcaacaccaccaaaggatttgggttcatcgccccggatgacggcggcaaagacgtc 1056361 Query: 151 ttcgtccac 159 ||||||||| Sbjct: 1056360 ttcgtccac 1056352
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 0.58 Identities = 24/25 (96%) Strand = Plus / Minus Query: 10 gatctagggtttcctgctagggttt 34 ||||||||||||| ||||||||||| Sbjct: 8032419 gatctagggtttcatgctagggttt 8032395
>gb|AE009515.1| Brucella melitensis 16M chromosome I, section 72 of 195 of the complete sequence Length = 10735 Score = 42.1 bits (21), Expect = 0.58 Identities = 30/33 (90%) Strand = Plus / Plus Query: 88 aagtggttcaacgtcaccaaggggttcggcttc 120 |||||||||||| ||||||||| ||||||||| Sbjct: 2146 aagtggttcaaccgcaccaagggtttcggcttc 2178
>dbj|AP003754.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1341_A08 Length = 128955 Score = 42.1 bits (21), Expect = 0.58 Identities = 24/25 (96%) Strand = Plus / Minus Query: 10 gatctagggtttcctgctagggttt 34 ||||||||||||| ||||||||||| Sbjct: 70616 gatctagggtttcatgctagggttt 70592
>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome Length = 3481691 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 ggaaccgtgaagtggttcaa 98 |||||||||||||||||||| Sbjct: 2964178 ggaaccgtgaagtggttcaa 2964197
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 2.3 Identities = 44/52 (84%) Strand = Plus / Plus Query: 77 agggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcatctcccc 128 ||||||| |||||||||||||||| ||||| |||||||||||| |||| Sbjct: 2912875 agggaactgtgaagtggttcaacgctgagaagggcttcggcttcatcgcccc 2912926
>emb|AJ937741.1| Streptomyces ambofaciens ATCC 23877 right terminal inverted repeat Length = 243019 Score = 40.1 bits (20), Expect = 2.3 Identities = 38/44 (86%) Strand = Plus / Minus Query: 85 gtgaagtggttcaacgtcaccaaggggttcggcttcatctcccc 128 |||||||||||||||| ||||| ||||||||||||||||| Sbjct: 63747 gtgaagtggttcaacggagagaagggattcggcttcatctcccc 63704 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 82 accgtgaagtggttcaacg 100 ||||||||||||||||||| Sbjct: 85566 accgtgaagtggttcaacg 85584
>emb|AJ937740.1| Streptomyces ambofaciens ATCC 23877 left terminal inverted repeat Length = 273746 Score = 40.1 bits (20), Expect = 2.3 Identities = 38/44 (86%) Strand = Plus / Minus Query: 85 gtgaagtggttcaacgtcaccaaggggttcggcttcatctcccc 128 |||||||||||||||| ||||| ||||||||||||||||| Sbjct: 63747 gtgaagtggttcaacggagagaagggattcggcttcatctcccc 63704 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 82 accgtgaagtggttcaacg 100 ||||||||||||||||||| Sbjct: 85566 accgtgaagtggttcaacg 85584
>gb|AY664413.1| Zea mays cultivar B73 locus 9002, complete sequence Length = 317137 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 130 gaggacggcagcgaggacctcttc 153 |||||||| ||||||||||||||| Sbjct: 205457 gaggacgggagcgaggacctcttc 205480
>dbj|AP006113.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT45A24, TM0197, complete sequence Length = 112846 Score = 40.1 bits (20), Expect = 2.3 Identities = 56/68 (82%) Strand = Plus / Plus Query: 105 caaggggttcggcttcatctccccggaggacggcagcgaggacctcttcgtccaccagtc 164 |||||| |||||||||||| || || |||||| | || || |||||||||||||| || Sbjct: 106960 caagggtttcggcttcatcaagcccgatgacggcggagaagatctcttcgtccaccaatc 107019 Query: 165 cgccatca 172 | |||||| Sbjct: 107020 ctccatca 107027
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 38.2 bits (19), Expect = 9.0 Identities = 40/47 (85%) Strand = Plus / Minus Query: 82 accgtgaagtggttcaacgtcaccaaggggttcggcttcatctcccc 128 ||||| || ||||||||| |||||| || |||||||||||| |||| Sbjct: 452936 accgtcaaatggttcaacaccaccaaaggcttcggcttcatcgcccc 452890
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 38.2 bits (19), Expect = 9.0 Identities = 31/35 (88%) Strand = Plus / Minus Query: 88 aagtggttcaacgtcaccaaggggttcggcttcat 122 ||||||||||||| | |||| || ||||||||||| Sbjct: 1427386 aagtggttcaacgacgccaaaggtttcggcttcat 1427352
>gb|AC165254.2| Mus musculus BAC clone RP23-285H4 from chromosome 13, complete sequence Length = 229672 Score = 38.2 bits (19), Expect = 9.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 13 ctagggtttcctgctagggtttt 35 ||||||||| ||||||||||||| Sbjct: 93237 ctagggtttactgctagggtttt 93215
>gb|AE008984.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 10 of 256 of the complete sequence Length = 10537 Score = 38.2 bits (19), Expect = 9.0 Identities = 31/35 (88%) Strand = Plus / Plus Query: 88 aagtggttcaacgtcaccaaggggttcggcttcat 122 ||||||||||||| |||||||| | ||||||||| Sbjct: 8431 aagtggttcaacgcaaccaagggctacggcttcat 8465
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 38.2 bits (19), Expect = 9.0 Identities = 31/35 (88%) Strand = Plus / Minus Query: 76 aagggaaccgtgaagtggttcaacgtcaccaaggg 110 |||||||| || ||||||||||||| | ||||||| Sbjct: 4950389 aagggaactgttaagtggttcaacggcgccaaggg 4950355
>gb|AY274819.1| Norwalk-like virus strain B-1SVD RNA-dependent RNA polymerase gene, partial cds; and capsid protein and small basic protein genes, complete cds Length = 2537 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 145 gacctcttcgtccaccagt 163 ||||||||||||||||||| Sbjct: 2381 gacctcttcgtccaccagt 2399
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 38.2 bits (19), Expect = 9.0 Identities = 25/27 (92%) Strand = Plus / Plus Query: 128 cggaggacggcagcgaggacctcttcg 154 ||||||||||||||| ||||| ||||| Sbjct: 2716163 cggaggacggcagcgcggaccgcttcg 2716189 Score = 38.2 bits (19), Expect = 9.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 77 agggaaccgtgaagtggttcaac 99 |||| |||||||||||||||||| Sbjct: 427648 agggcaccgtgaagtggttcaac 427626
>emb|X68245.1|SC7KDPG S.clavuligerus DNA (SC7.0) for 7 kDa cold shock like protein Length = 371 Score = 38.2 bits (19), Expect = 9.0 Identities = 76/95 (80%) Strand = Plus / Plus Query: 79 ggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacggc 138 |||||||| ||||||||||||| ||||| |||||||||||| ||| ||| | |||| Sbjct: 75 ggaaccgtcaagtggttcaacgctgaaaagggcttcggcttcatcgcccaggacggcggc 134 Query: 139 agcgaggacctcttcgtccaccagtccgccatcaa 173 || ||| ||||||||||| | ||||| ||||| Sbjct: 135 ggcccggatgtcttcgtccactactccgcgatcaa 169
>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29 Length = 295150 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 82 accgtgaagtggttcaacg 100 ||||||||||||||||||| Sbjct: 200808 accgtgaagtggttcaacg 200790
>emb|AL939121.1|SCO939121 Streptomyces coelicolor A3(2) complete genome; segment 18/29 Length = 292100 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 82 accgtgaagtggttcaacg 100 ||||||||||||||||||| Sbjct: 35810 accgtgaagtggttcaacg 35828
>emb|AJ011099.1|BCA011099 Bovine enteric calicivirus (isolate Jena) genomic RNA for a non-structural polyprotein, structural capsid protein and small basic protein Length = 7338 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 145 gacctcttcgtccaccagt 163 ||||||||||||||||||| Sbjct: 7166 gacctcttcgtccaccagt 7184
>gb|AF183396.1| Musca domestica P element MdP1 transposase (tnp) pseudogene, complete sequence Length = 2716 Score = 38.2 bits (19), Expect = 9.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 31 gttttggtccttcgttttcggcg 53 ||||| ||||||||||||||||| Sbjct: 264 gtttttgtccttcgttttcggcg 242
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 38.2 bits (19), Expect = 9.0 Identities = 76/95 (80%) Strand = Plus / Minus Query: 79 ggaaccgtgaagtggttcaacgtcaccaaggggttcggcttcatctccccggaggacggc 138 ||||||||||||||||| |||| | ||||| || || |||||| ||| ||| | |||| Sbjct: 5860973 ggaaccgtgaagtggtttaacgccgaaaagggctttggtttcatcgcccaggaaggcggc 5860914 Query: 139 agcgaggacctcttcgtccaccagtccgccatcaa 173 || |||| ||||||||||| | ||||| ||||| Sbjct: 5860913 ggcccggacgtcttcgtccactactccgcgatcaa 5860879 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 82 accgtgaagtggttcaacg 100 ||||||||||||||||||| Sbjct: 5821565 accgtgaagtggttcaacg 5821583 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 82 accgtgaagtggttcaacg 100 ||||||||||||||||||| Sbjct: 5434031 accgtgaagtggttcaacg 5434013 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 82 accgtgaagtggttcaacg 100 ||||||||||||||||||| Sbjct: 5102784 accgtgaagtggttcaacg 5102802
>gb|AC012355.10| Homo sapiens BAC clone RP11-239I4 from 2, complete sequence Length = 120112 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 17 ggtttcctgctagggtttt 35 ||||||||||||||||||| Sbjct: 83492 ggtttcctgctagggtttt 83474
>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome Length = 2593857 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 136 ggcagcgaggacctcttcg 154 ||||||||||||||||||| Sbjct: 2049682 ggcagcgaggacctcttcg 2049700
>gb|AF098531.1|AF098531 Myxococcus xanthus CspD (cspD) gene, complete cds Length = 1069 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 82 accgtgaagtggttcaacg 100 ||||||||||||||||||| Sbjct: 453 accgtgaagtggttcaacg 471
>gb|U70990.1|SAU70990 Stigmatella aurantiaca cold shock-like protein (cspA) gene, complete cds Length = 894 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 82 accgtgaagtggttcaacg 100 ||||||||||||||||||| Sbjct: 319 accgtgaagtggttcaacg 337
>gb|AF162937.1|AF162937 Streptomyces coelicolor A3(2) F40 (f40) gene, complete cds Length = 523 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 82 accgtgaagtggttcaacg 100 ||||||||||||||||||| Sbjct: 297 accgtgaagtggttcaacg 315
>gb|AF115849.1|AF115849 Trichomonas vaginalis pre-mRNA processing 8 protein homolog PRP8 (PRP8) gene, complete cds Length = 7429 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 149 tcttcgtccaccagtccgc 167 ||||||||||||||||||| Sbjct: 2647 tcttcgtccaccagtccgc 2629
>ref|NM_001031774.2| Gallus gallus lin-28 homolog (C. elegans) (LIN28), mRNA Length = 1499 Score = 38.2 bits (19), Expect = 9.0 Identities = 34/39 (87%) Strand = Plus / Plus Query: 88 aagtggttcaacgtcaccaaggggttcggcttcatctcc 126 ||||||||||||||| || ||| ||||||||| ||||| Sbjct: 221 aagtggttcaacgtccgcatgggcttcggcttcctctcc 259
>gb|DQ127226.2| Gallus gallus LIN28A mRNA, complete cds Length = 1499 Score = 38.2 bits (19), Expect = 9.0 Identities = 34/39 (87%) Strand = Plus / Plus Query: 88 aagtggttcaacgtcaccaaggggttcggcttcatctcc 126 ||||||||||||||| || ||| ||||||||| ||||| Sbjct: 221 aagtggttcaacgtccgcatgggcttcggcttcctctcc 259 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 882,175 Number of Sequences: 3902068 Number of extensions: 882175 Number of successful extensions: 58281 Number of sequences better than 10.0: 155 Number of HSP's better than 10.0 without gapping: 155 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 55579 Number of HSP's gapped (non-prelim): 2687 length of query: 183 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 161 effective length of database: 17,147,199,772 effective search space: 2760699163292 effective search space used: 2760699163292 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
