ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl43h09 |
|---|---|
| Clone Library Name | barley_pub |
>U202A_ARATH (Q9XIK4) Hypothetical UPF0202 protein At1g10490| Length = 1058 Score = 174 bits (442), Expect(2) = 2e-46 Identities = 80/112 (71%), Positives = 100/112 (89%) Frame = +2 Query: 68 KKVDERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYMLAMSRVKSRPSVLWCYRNKL 247 KKVDERIRTLIENGV+ R RSMF+I+GDK+RDQIVNL+++L+ S VKS PSVLWCY+N+L Sbjct: 3 KKVDERIRTLIENGVKLRHRSMFVIIGDKARDQIVNLHHILSKSVVKSNPSVLWCYKNRL 62 Query: 248 EISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDSERVLG 403 +ISSH KKRAKQ+KK+ +RG +DPEK D FSLFL+ D+T+C+YKDSER+LG Sbjct: 63 DISSHNKKRAKQLKKMKERGQLDPEKLDAFSLFLDVVDVTHCLYKDSERILG 114 Score = 30.0 bits (66), Expect(2) = 2e-46 Identities = 12/14 (85%), Positives = 14/14 (100%) Frame = +1 Query: 403 HTFGMCILQDFEAL 444 +TFG+CILQDFEAL Sbjct: 115 NTFGICILQDFEAL 128
>U202B_ARATH (Q9M2Q4) Hypothetical UPF0202 protein At3g57940| Length = 1024 Score = 164 bits (414), Expect(2) = 1e-43 Identities = 74/112 (66%), Positives = 97/112 (86%) Frame = +2 Query: 68 KKVDERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYMLAMSRVKSRPSVLWCYRNKL 247 KKVDERIRTLIENGV+ R RSMF+I+GDKSRDQIVNL++ML+ + +K PSVLWCY++KL Sbjct: 3 KKVDERIRTLIENGVKLRHRSMFVIIGDKSRDQIVNLHHMLSKAVIKCNPSVLWCYKDKL 62 Query: 248 EISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDSERVLG 403 +ISSH++KR+KQ+K+L +RG +DPEK D FS L+ +T+C+YKDSER+LG Sbjct: 63 DISSHKQKRSKQLKRLRERGQLDPEKLDAFSRLLDVGRVTHCLYKDSERILG 114 Score = 31.6 bits (70), Expect(2) = 1e-43 Identities = 13/14 (92%), Positives = 14/14 (100%) Frame = +1 Query: 403 HTFGMCILQDFEAL 444 +TFGMCILQDFEAL Sbjct: 115 NTFGMCILQDFEAL 128
>ALP_HUMAN (Q9H0A0) N-acetyltransferase-like protein (EC 2.3.1.-)| Length = 1025 Score = 136 bits (343), Expect(2) = 2e-35 Identities = 59/112 (52%), Positives = 89/112 (79%) Frame = +2 Query: 68 KKVDERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYMLAMSRVKSRPSVLWCYRNKL 247 KKVD RIR LIENGV +RQRS+F++VGD+ +DQ+V L++ML+ + VK+RPSVLWCY+ +L Sbjct: 4 KKVDNRIRILIENGVAERQRSLFVVVGDRGKDQVVILHHMLSKATVKARPSVLWCYKKEL 63 Query: 248 EISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDSERVLG 403 SSHRKKR +Q++K ++ G ++ ++ DPF LF+ ++I YC Y ++ ++LG Sbjct: 64 GFSSHRKKRMRQLQKKIKNGTLNIKQDDPFELFIAATNIRYCYYNETHKILG 115 Score = 31.2 bits (69), Expect(2) = 2e-35 Identities = 12/14 (85%), Positives = 14/14 (100%) Frame = +1 Query: 403 HTFGMCILQDFEAL 444 +TFGMC+LQDFEAL Sbjct: 116 NTFGMCVLQDFEAL 129
>YDK9_SCHPO (P87115) Hypothetical UPF0202 protein C20G8.09c in chromosome I| Length = 1033 Score = 131 bits (330), Expect(2) = 3e-32 Identities = 59/113 (52%), Positives = 88/113 (77%), Gaps = 1/113 (0%) Frame = +2 Query: 68 KKVDERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYMLAMSRVKSRPSVLWCY-RNK 244 K +D RI TLI+NG +++QRS F++VGD++RDQ+VNL+++L+ S+V +RP+VLW Y ++ Sbjct: 4 KALDSRIPTLIKNGCQEKQRSFFVVVGDRARDQVVNLHWLLSQSKVAARPNVLWMYKKDL 63 Query: 245 LEISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDSERVLG 403 L +SHRKKR +IKK ++RG+ DP DPF LF ++I YC YK+SE++LG Sbjct: 64 LGFTSHRKKRENKIKKEIKRGIRDPNSEDPFELFCSITNIRYCYYKESEKILG 116 Score = 25.8 bits (55), Expect(2) = 3e-32 Identities = 10/13 (76%), Positives = 12/13 (92%) Frame = +1 Query: 406 TFGMCILQDFEAL 444 T+GM +LQDFEAL Sbjct: 118 TYGMLVLQDFEAL 130
>YNN2_YEAST (P53914) Hypothetical UPF0202 protein YNL132w| Length = 1056 Score = 113 bits (282), Expect(2) = 3e-28 Identities = 53/113 (46%), Positives = 80/113 (70%), Gaps = 1/113 (0%) Frame = +2 Query: 68 KKVDERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYMLAMSRVKSRPSVLWCYRNK- 244 K +D RI +LI NGV+ +QRS+F+IVGD++R+Q+ NL+Y++ + +K SVLW Y+ K Sbjct: 4 KAIDSRIPSLIRNGVQTKQRSIFVIVGDRARNQLPNLHYLMMSADLKMNKSVLWAYKKKL 63 Query: 245 LEISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDSERVLG 403 L +SHRKKR +IKK ++RG + + DPF F+ +I Y YK+SE++LG Sbjct: 64 LGFTSHRKKRENKIKKEIKRGTREVNEMDPFESFISNQNIRYVYYKESEKILG 116 Score = 30.4 bits (67), Expect(2) = 3e-28 Identities = 12/14 (85%), Positives = 14/14 (100%) Frame = +1 Query: 403 HTFGMCILQDFEAL 444 +T+GMCILQDFEAL Sbjct: 117 NTYGMCILQDFEAL 130
>YIL8_CAEEL (O01757) Hypothetical UPF0202 protein F55A12.8 in chromosome I| Length = 1043 Score = 115 bits (288), Expect(2) = 3e-27 Identities = 54/111 (48%), Positives = 77/111 (69%) Frame = +2 Query: 71 KVDERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYMLAMSRVKSRPSVLWCYRNKLE 250 K+D RIRT IENGV RSMF +VGDK+RDQ+ L ++L+ S V +RP+VLWCY+ +L Sbjct: 4 KLDGRIRTQIENGVASGHRSMFAVVGDKARDQVPILYHILSKSTVSARPNVLWCYKKELS 63 Query: 251 ISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDSERVLG 403 S+HR K+AK++KK ADPF +F+ ++ I YC Y ++E++LG Sbjct: 64 FSTHRAKKAKKMKKATTTISGSLPDADPFDVFISSTQIRYCYYNETEKILG 114 Score = 25.0 bits (53), Expect(2) = 3e-27 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +1 Query: 403 HTFGMCILQDFEAL 444 +TFG+ +LQDFEA+ Sbjct: 115 NTFGVLVLQDFEAM 128
>U202_DROME (Q9W3C1) Polycomb protein l(1)G0020 (p110 protein)| Length = 1008 Score = 100 bits (250), Expect(2) = 7e-24 Identities = 56/113 (49%), Positives = 75/113 (66%), Gaps = 1/113 (0%) Frame = +2 Query: 68 KKVDERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYMLAMSRVKSRPSVLWCYRNKL 247 KK+D RIR +IENGV+ R+MFI++GDK+RDQ+ L +L S VK+RP+VLWCY+NK Sbjct: 4 KKIDNRIRVMIENGVKLGHRTMFIVIGDKARDQVPILYDILTKSTVKARPTVLWCYKNKD 63 Query: 248 E-ISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDSERVLG 403 E IS+H KKRAK+I G +D +AD F F + I Y ++ VLG Sbjct: 64 EAISNHGKKRAKKIAV----GKVDVNEADLFDSFRVATTIHGRYYSETHAVLG 112 Score = 28.1 bits (61), Expect(2) = 7e-24 Identities = 10/13 (76%), Positives = 13/13 (100%) Frame = +1 Query: 406 TFGMCILQDFEAL 444 T+G+C+LQDFEAL Sbjct: 114 TYGVCVLQDFEAL 126
>BUN2_DROME (Q24523) Protein bunched, class 2 isoform (Protein shortsighted)| Length = 1206 Score = 32.7 bits (73), Expect = 0.41 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = +1 Query: 163 PDRQPQLHAGHVPRQVAPLRALVLPQQARDQQPQEEARQADQE 291 P P L P +A + L++PQQ + QQ QEE +Q Q+ Sbjct: 902 PQAIPTLQLQSAPSTIADPQQLMVPQQQQQQQHQEEQQQQPQQ 944
>CN102_MOUSE (Q80XC6) Protein C14orf102 homolog| Length = 1172 Score = 32.0 bits (71), Expect = 0.70 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%) Frame = +2 Query: 221 VLWCYRNKLEISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSDITYCM--YKDSER 394 V+WC K K + K KKL + L +PE + F L+ + + + + + +D+ + Sbjct: 753 VIWCLHTK---KKRLKSQGKSCKKLAKNLLKEPENRNNFCLWKQYAHLEWLLGNTEDARK 809 Query: 395 VLGTRLACA 421 V T L+ A Sbjct: 810 VFDTALSMA 818
>CN102_HUMAN (Q9H7Z3) Protein C14orf102| Length = 1164 Score = 32.0 bits (71), Expect = 0.70 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%) Frame = +2 Query: 221 VLWCYRNKLEISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSDITYCM--YKDSER 394 V+WC K + K + K KKL + L +PE + F L+ + + + + + +D+ + Sbjct: 744 VIWCLHTKNK--KRLKSQGKNCKKLAKNLLKEPENCNNFCLWKQYAHLEWLLGNTEDARK 801 Query: 395 VLGTRLACAYCR 430 V T L A R Sbjct: 802 VFDTALGMAGSR 813
>GPA12_CAEEL (Q19572) Guanine nucleotide-binding protein alpha-12 subunit| Length = 355 Score = 30.8 bits (68), Expect = 1.6 Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 2/98 (2%) Frame = +2 Query: 101 ENGVRQRQRSMFII--VGDKSRDQIVNLNYMLAMSRVKSRPSVLWCYRNKLEISSHRKKR 274 E+G + M II G+ + D++ + + + S VL RNKL I+ KR Sbjct: 39 ESGKSTFVKQMHIIHGAGEFTADEVRAYRQQIYQNAI-SAMRVLLDARNKLGIAWEDPKR 97 Query: 275 AKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDS 388 +++K+M+ + D K F+ F+E + I + D+ Sbjct: 98 QVEVEKVMRFSVGDLLKGIDFTTFVEVAPIISDFWNDA 135
>DPOG1_MOUSE (P54099) DNA polymerase gamma subunit 1 (EC 2.7.7.7) (Mitochondrial| DNA polymerase catalytic subunit) (PolG-alpha) Length = 1239 Score = 30.8 bits (68), Expect = 1.6 Identities = 24/94 (25%), Positives = 42/94 (44%) Frame = +2 Query: 80 ERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYMLAMSRVKSRPSVLWCYRNKLEISS 259 ER T +N + QR M + D + D +L+ R K P W + + ++ Sbjct: 425 ERYLTEAQNTYEELQREMKKSLMDLANDAC----QLLSGERYKEDP---WLWDLEWDLQE 477 Query: 260 HRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSD 361 ++K+AK++KK + E A PF ++ D Sbjct: 478 FKQKKAKKVKKPASASKLPIEGAGPFGDPMDQED 511
>OCTB1_DROME (Q9VCZ3) Octopamine receptor beta-1 (DmOct-beta-1R) (DmOA2)| Length = 508 Score = 30.8 bits (68), Expect = 1.6 Identities = 18/62 (29%), Positives = 30/62 (48%) Frame = -1 Query: 426 QYAHAKRVPRTLSESLYMQ*VMSEVSRKREKGSAFSGSMSPRCMSFLICLARFFLWLLIS 247 ++ ++P+ Q +S + R+R+ MS +FLIC FFLW ++S Sbjct: 318 KHLQISQIPKPRPSIQVEQSTISTMRRERKAARTLGIIMS----AFLICWLPFFLWYIVS 373 Query: 246 SL 241 SL Sbjct: 374 SL 375
>GPA12_CAEBR (Q613V4) Guanine nucleotide-binding protein alpha-12 subunit| Length = 355 Score = 30.0 bits (66), Expect = 2.7 Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 2/98 (2%) Frame = +2 Query: 101 ENGVRQRQRSMFII--VGDKSRDQIVNLNYMLAMSRVKSRPSVLWCYRNKLEISSHRKKR 274 E+G + M II G+ + D++ + + + S VL RNKL I+ KR Sbjct: 39 ESGKSTFVKQMHIIHGAGEFTADEVRAYRQQIYQNAI-SAMRVLLDARNKLGIAWEDPKR 97 Query: 275 AKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDS 388 +++K+M+ + D K F+ F+E + I + D+ Sbjct: 98 QVEVEKVMRFTVGDLLKGIDFTTFVEVAPIISDFWNDA 135
>DPOG1_RAT (Q9QYV8) DNA polymerase gamma subunit 1 (EC 2.7.7.7) (Mitochondrial| DNA polymerase catalytic subunit) (PolG-alpha) Length = 1216 Score = 28.5 bits (62), Expect = 7.7 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 1/95 (1%) Frame = +2 Query: 80 ERIRTLIENGVRQRQRSMFIIVGDKSRDQIVN-LNYMLAMSRVKSRPSVLWCYRNKLEIS 256 ER T ++ + QR M KS ++ N +L+ R K P W + + ++ Sbjct: 424 ERYLTEAQSTYEELQREM-----KKSLMELANDACQLLSGERYKEDP---WLWDLEWDLQ 475 Query: 257 SHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSD 361 ++K+AK++KK + E A PF ++ D Sbjct: 476 EFKQKKAKKVKKTASASKLPIEGAGPFGDPMDQED 510 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,554,987 Number of Sequences: 219361 Number of extensions: 560315 Number of successful extensions: 2052 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1969 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2038 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2618960580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
