ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl43h07 |
|---|---|
| Clone Library Name | barley_pub |
>BLNK_MOUSE (Q9QUN3) B-cell linker protein (Cytoplasmic adapter protein)| (B-cell adapter containing SH2 domain protein) (B-cell adapter containing Src homology 2 domain protein) (Src homology 2 domain-containing leukocyte protein of 65 kDa) (Slp-65) (Lymp Length = 457 Score = 32.0 bits (71), Expect = 0.42 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Frame = +3 Query: 78 NDEDGVHKRYASPSLREKVLQPSR-TSSHASATHMPGYGTSAIVAMDKSAAISSDTSLP 251 NDE+ +H R +SP EK +R T ++S+ HM GT VA S S +SLP Sbjct: 185 NDENYIHPRESSPPPAEKAPMVNRSTKPNSSSKHMSPPGT---VAGRNSGVWDSKSSLP 240
>NU5M_PEA (Q35639) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) (Fragment) Length = 183 Score = 30.0 bits (66), Expect = 1.6 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Frame = +1 Query: 115 PHSVRRFCSLLVLHLMQVPLTCLDMALQLLLQWTRVQL--FLQIH 243 PHS R C L +L L D +LQL L W V L +L IH Sbjct: 2 PHSPRFMCYLSILTFFMPMLVTGDNSLQLFLGWEGVGLASYLLIH 46
>BLNK_RAT (Q4KM52) B-cell linker protein (Cytoplasmic adapter protein)| Length = 457 Score = 29.6 bits (65), Expect = 2.1 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Frame = +3 Query: 78 NDEDGVHKRYASPSLREKVLQPSR-TSSHASATHMPGYGTSAIVAMDKSAAISSDTSLP 251 NDE+ +H R +SP EK +R T ++S+ H+ GT VA S S +SLP Sbjct: 185 NDENYIHPRESSPLPAEKAPTVNRSTKPNSSSKHVSPPGT---VAGRNSGVWDSKSSLP 240
>ECM1_HUMAN (Q16610) Extracellular matrix protein 1 precursor (Secretory| component p85) Length = 540 Score = 28.9 bits (63), Expect = 3.6 Identities = 15/57 (26%), Positives = 25/57 (43%) Frame = -1 Query: 255 LLAAMYLKK*LHSCPLQQ*LKCHIQACEWHLHEMKYEKAAEPSHGVREKHNVCAHHP 85 LLA + L++ C Q + C W E +K + + V+ H++C HP Sbjct: 335 LLALIQLEREFQRCCRQG----NNHTCTWKAWEDTLDKYCDREYAVKTHHHLCCRHP 387
>NU5M_MARPO (P26849) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 669 Score = 28.5 bits (62), Expect = 4.7 Identities = 15/38 (39%), Positives = 18/38 (47%) Frame = +1 Query: 115 PHSVRRFCSLLVLHLMQVPLTCLDMALQLLLQWTRVQL 228 PHS R FC L + + L D +QL L W V L Sbjct: 108 PHSPRFFCYLSIFTFFMLMLVTGDNFIQLFLGWEGVGL 145
>NU5M_ARATH (P29388) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 669 Score = 28.5 bits (62), Expect = 4.7 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%) Frame = +1 Query: 115 PHSVRRFCSLLVLHLMQVPLTCLDMALQLLLQWTRVQL--FLQIH 243 PHS R C L + + L D LQL L W V L +L IH Sbjct: 108 PHSPRFMCYLSIFTFFMLMLVTGDNFLQLFLGWEGVGLASYLLIH 152
>ATL1L_ARATH (Q6NQG7) RING-H2 finger protein ATL1L| Length = 219 Score = 28.5 bits (62), Expect = 4.7 Identities = 14/58 (24%), Positives = 27/58 (46%) Frame = +3 Query: 87 DGVHKRYASPSLREKVLQPSRTSSHASATHMPGYGTSAIVAMDKSAAISSDTSLPTNH 260 D R + ++ K L+ +T S+++ ++PG T + + + A LPT H Sbjct: 94 DNYPVRLTNTGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCH 151
>LCP2_MOUSE (Q60787) Lymphocyte cytosolic protein 2 (SH2 domain-containing| leucocyte protein of 76 kDa) (SLP-76 tyrosine phosphoprotein) (SLP76) Length = 533 Score = 28.5 bits (62), Expect = 4.7 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 9/63 (14%) Frame = +3 Query: 69 RTINDEDGVHKR---------YASPSLREKVLQPSRTSSHASATHMPGYGTSAIVAMDKS 221 R NDED VH+R +S + + +QPS ++ A HMPG + + + +S Sbjct: 316 RRENDEDDVHQRPLPQPSLPSMSSNTFPSRSVQPSSKNTFPLA-HMPGAFSESNIGFQQS 374 Query: 222 AAI 230 A++ Sbjct: 375 ASL 377
>NU5M_WHEAT (Q37680) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 670 Score = 28.5 bits (62), Expect = 4.7 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%) Frame = +1 Query: 115 PHSVRRFCSLLVLHLMQVPLTCLDMALQLLLQWTRVQL--FLQIH 243 PHS R C L + + L D LQL L W V L +L IH Sbjct: 108 PHSPRFMCYLSIFTFFMLMLVTGDNFLQLFLGWEGVGLASYLLIH 152
>VGNB_RCMV (P35930) Genome polyprotein B (RNA1 polyprotein) [Contains:| Protease cofactor (32 kDa protein); Putative helicase (EC 3.6.1.-) (NTP-binding protein) (NTB) (Membrane-binding protein) (58 kDa protein); Viral genome-linked protein (VPg); Picornain Length = 1864 Score = 28.1 bits (61), Expect = 6.1 Identities = 14/39 (35%), Positives = 19/39 (48%) Frame = +3 Query: 153 SSHASATHMPGYGTSAIVAMDKSAAISSDTSLPTNHLRL 269 S + + TH GY IV +D AA+ SD S + L Sbjct: 513 SRNTTETHWSGYRRQPIVVIDDFAAVESDISAEAQLINL 551
>FANCB_MOUSE (Q5XJY6) Fanconi anemia group B protein homolog (Protein FACB)| Length = 703 Score = 28.1 bits (61), Expect = 6.1 Identities = 12/32 (37%), Positives = 15/32 (46%) Frame = +2 Query: 146 SYFISCKCHSHAWIWHFSYCCNGQECSYFFRY 241 S F KCHS W+ C QEC+ + Y Sbjct: 508 SSFHLMKCHSQVWLLKHMKCERIQECTEIYLY 539
>XERD_CHLMU (Q9PL53) Tyrosine recombinase xerD| Length = 301 Score = 28.1 bits (61), Expect = 6.1 Identities = 15/49 (30%), Positives = 25/49 (51%) Frame = +1 Query: 109 LLPHSVRRFCSLLVLHLMQVPLTCLDMALQLLLQWTRVQLFLQIHRCQQ 255 + P SV+ +C ++L L +VP+ DM Q +FL + +C Q Sbjct: 25 IAPLSVQAYCQDILLFLQRVPIETTDMINQ-------ESVFLFVEKCHQ 66 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,446,438 Number of Sequences: 219361 Number of extensions: 793533 Number of successful extensions: 2712 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2640 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2710 length of database: 80,573,946 effective HSP length: 67 effective length of database: 65,876,759 effective search space used: 1581042216 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
