>PRG4_MOUSE (Q9JM99) Proteoglycan-4 precursor (Lubricin) (Megakaryocyte|
           stimulating factor) (Superficial zone proteoglycan)
           [Contains: Proteoglycan-4 C-terminal part]
          Length = 1054

 Score = 32.7 bits (73), Expect = 0.44
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +1

Query: 64  KPTHSPRNSQAHKNSEK*KSSRKIGVPNPLPRASRIPRIPTNPHEIFQPS 213
           KPT +P+   + K  +  K+ +    P+PL   S  P + T P E+  P+
Sbjct: 676 KPTKAPKKPTSTKKPKTPKTRKPKTTPSPLKTTSATPELNTTPLEVMLPT 725

>BLNK_HUMAN (Q8WV28) B-cell linker protein (Cytoplasmic adapter protein)|
           (B-cell adapter containing SH2 domain protein) (B-cell
           adapter containing Src homology 2 domain protein) (Src
           homology 2 domain-containing leukocyte protein of 65
           kDa) (SLP-65)
          Length = 456

 Score = 32.3 bits (72), Expect = 0.57
 Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
 Frame = +1

Query: 49  TSTPHKP--THSPRNSQAHKNSEK*KSSRKIGVPNPLPRASRIPRIPTNPHEIFQPSNAA 222
           +STP  P  T S RNS A +       S     P+PLPRA + P  P     +    NA+
Sbjct: 214 SSTPASPPGTASGRNSGAWETK-----SPPPAAPSPLPRAGKKPTTPLKTTPVASQQNAS 268

Query: 223 AF---RRFPDEAHR 255
           +    +  P E HR
Sbjct: 269 SVCEEKPIPAERHR 282

>B3A2_RABIT (P48746) Anion exchange protein 2 (Non-erythroid band 3-like|
           protein) (AE2 anion exchanger) (Solute carrier family 4
           member 2) (B3RP)
          Length = 1237

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = +1

Query: 118 KSSRKIGVPNPLPRASRIPRIPTNPHEIFQPSNAAAFRRFPDEAHREIQR 267
           +SSR+   P P PR+   PR P  PHE+F   N     +  +   RE  R
Sbjct: 294 QSSREGREPGPTPRSR--PRAPHKPHEVFVELNELLLDKNQEPQWRETAR 341

>B3A2_CAVPO (Q9Z0S8) Anion exchange protein 2 (Non-erythroid band 3-like|
           protein) (AE2 anion exchanger) (Solute carrier family 4
           member 2)
          Length = 1238

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = +1

Query: 118 KSSRKIGVPNPLPRASRIPRIPTNPHEIFQPSNAAAFRRFPDEAHREIQR 267
           +SSR+   P P PR    PR P  PHE+F   N     +  +   RE  R
Sbjct: 294 QSSREGREPGPTPRTR--PRAPHKPHEVFVELNELLLDKNQEPQWRETAR 341

>B3A2_HUMAN (P04920) Anion exchange protein 2 (Non-erythroid band 3-like|
           protein) (AE2 anion exchanger) (Solute carrier family 4
           member 2) (BND3L)
          Length = 1241

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = +1

Query: 118 KSSRKIGVPNPLPRASRIPRIPTNPHEIFQPSNAAAFRRFPDEAHREIQR 267
           +S R+   P P PRA   PR P  PHE+F   N     +  +   RE  R
Sbjct: 298 QSGREGREPGPTPRAR--PRAPHKPHEVFVELNELLLDKNQEPQWRETAR 345

>B3A2_RAT (P23347) Anion exchange protein 2 (Non-erythroid band 3-like|
           protein) (AE2 anion exchanger) (Solute carrier family 4
           member 2) (B3RP)
          Length = 1234

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +1

Query: 118 KSSRKIGVPNPLPRASRIPRIPTNPHEIFQPSNAAAFRRFPDEAHREIQR 267
           +++R+   P P PRA   PR P  PHE+F   N     +  +   RE  R
Sbjct: 295 QAAREGREPGPTPRAR--PRAPHKPHEVFVELNELQLDKNQEPQWRETAR 342

>B3A2_MOUSE (P13808) Anion exchange protein 2 (Non-erythroid band 3-like|
           protein) (AE2 anion exchanger) (Solute carrier family 4
           member 2) (B3RP)
          Length = 1237

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +1

Query: 118 KSSRKIGVPNPLPRASRIPRIPTNPHEIFQPSNAAAFRRFPDEAHREIQR 267
           +++R+   P P PRA   PR P  PHE+F   N     +  +   RE  R
Sbjct: 294 QAAREGREPGPTPRAR--PRAPHKPHEVFVELNELLLDKNQEPQWRETAR 341

>PRLR_PIG (Q6JTA8) Prolactin receptor precursor (PRL-R)|
          Length = 625

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = +2

Query: 29  SPSCPDEQAHHTNPHTPHGIHKP----TKIPRNRNPLEKS 136
           S  C + +A+    HTP GI KP    T +PR ++P   S
Sbjct: 361 SEKCDEPRANPPKFHTPEGIEKPGDPETNLPRPQDPQSTS 400

>RAI1_MOUSE (Q61818) Retinoic acid-induced protein 1|
          Length = 1889

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +1

Query: 37  VPRRTSTPHKPTHSPRNSQAHKNSEK*KSSRKIGVPNPLPRASRIPR 177
           +P RT + H P   P+   A+   ++ K    +  P P P+ S  P+
Sbjct: 158 LPFRTHSLHVPPPQPQQPLAYPKLQRQKPQNDLASPLPFPQGSHFPQ 204

>FABH_GLOVI (Q7NF35) 3-oxoacyl-[acyl-carrier-protein] synthase 3 (EC 2.3.1.41)|
           (3-oxoacyl-[acyl-carrier-protein] synthase III)
           (Beta-ketoacyl-ACP synthase III) (KAS III)
          Length = 329

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 9/88 (10%)
 Frame = -3

Query: 425 IKRTAQGAKIAPLLPYSYRSHAAATQLIDQDAAARDGAPRR---------TTSESATTLC 273
           I++T     +AP    +Y  H A  +++D  A+    AP R          TS ++  L 
Sbjct: 233 IEKTLAACGVAPEQVKAYLLHQANQRILDSVASRLHVAPERMASNLADYGNTSSASVPLI 292

Query: 272 TARWISRWASSGNLRKAAALEGWKISWG 189
              W+         R   A  G  +SWG
Sbjct: 293 LQEWVQDGRIRAGDRVVLAGFGAGLSWG 320

>BLNK_MOUSE (Q9QUN3) B-cell linker protein (Cytoplasmic adapter protein)|
           (B-cell adapter containing SH2 domain protein) (B-cell
           adapter containing Src homology 2 domain protein) (Src
           homology 2 domain-containing leukocyte protein of 65
           kDa) (Slp-65) (Lymp
          Length = 457

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
 Frame = +1

Query: 34  LVPRRTSTPHKPTH-SPRNSQAHKNSEK*KSSRKI-GVPNPLPRASRIPRIP---TNPHE 198
           +V R T       H SP  + A +NS    S   +   P+PLPRA + P  P   T    
Sbjct: 205 MVNRSTKPNSSSKHMSPPGTVAGRNSGVWDSKSSLPAAPSPLPRAGKKPATPLKTTPVPP 264

Query: 199 IFQPSNAAAFRRFPDEAHR 255
           +   SN    +  P E HR
Sbjct: 265 LPNASNVCEEKPVPAERHR 283

>M3K4_HUMAN (Q9Y6R4) Mitogen-activated protein kinase kinase kinase 4 (EC|
            2.7.11.25) (MAPK/ERK kinase kinase 4) (MEK kinase 4)
            (MEKK 4) (MAP three kinase 1)
          Length = 1607

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
 Frame = +1

Query: 154  PRASRIPRI---PTNPHEIFQPSNAAAFRRFPDEAHREIQRAVHRVVADSLVVRRGAPS 321
            PR  ++PR    P NPH I       + R  P +A      A     A ++   R +PS
Sbjct: 1149 PRPMKVPRCHSDPPNPHLIIPTPEGFSTRSMPSDARSHGSPAAAAAAAAAVAASRPSPS 1207

>RNB_HHV1M (P56958) RNA-binding protein (Vmw21)|
          Length = 161

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 64  KPTHSPRNSQAHKNSEK*KSSRKIGVPNPLPRASRIPRIPTNPHEIFQP 210
           +P   PR  +  +     +  R+   P  +PRASR PR+P +P +  QP
Sbjct: 80  RPPTIPRTPRVPREPRVPRPPREPREPR-VPRASRDPRVPRDPRDPRQP 127

>SPF45_HUMAN (Q96I25) Splicing factor 45 (45 kDa splicing factor) (RNA-binding|
           motif protein 17)
          Length = 401

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = +1

Query: 49  TSTPHKPTHSPRNSQAHKNSEK*KSSRKIGVPNPLPRASRIPRIPTNPHEIF 204
           TS   K    PR+    ++S     S K  +P P+      PR PT P   F
Sbjct: 179 TSLVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPSNSF 230

>RNB_HHV2H (P89479) Probable RNA-binding protein|
          Length = 151

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +1

Query: 31  SLVPRRTSTPHKPT--HSPRNSQAHKNSEK*KSSRKIGVPNPLPRASRIPRIPTNPHE 198
           S +PR    P +P     PR  +  ++  + +  R    P P PR  R+PR P  P E
Sbjct: 87  SRIPRAPRVPREPRVPREPREPRVPRSPREPRVPRIPRDPRP-PRPPRVPREPRPPRE 143

>RMUC_NEIMB (Q9JXH2) DNA recombination protein rmuC homolog|
          Length = 594

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
 Frame = -3

Query: 287 ATTLCTARWISR-WASSGNLRKAAAL--EGWKISWGFVGIRGIREALGRGFGTPIFREDF 117
           +T L T R ++  W +    + A A+  EG K+   FVG     E++G+G       +  
Sbjct: 478 STLLATLRTVANIWRNEQQNQNALAIADEGGKLYDKFVGFVQTLESVGKGIDQ---AQSS 534

Query: 116 YFSEFLWACEFRGECVGLCGVLVRLGTRERNPMQ 15
           + + F    E RG  VG    L  LG +    +Q
Sbjct: 535 FQTAFKQLAEGRGNLVGRAEKLRLLGVKAGKQLQ 568


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,668,326
Number of Sequences: 219361
Number of extensions: 1167290
Number of successful extensions: 4342
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4324
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)