>GAG_FUJSV (P03326) Gag polyprotein [Contains: Core protein p19; Core protein|
           p10; Core protein p27]
          Length = 309

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 139 APPPPRTARGVFPSVAKRGRREINGG 62
           APPPP    G++PS+A  G ++  GG
Sbjct: 166 APPPPYVGSGLYPSLAGVGEQQGQGG 191

>GAG_AVEV1 (P06936) Gag polyprotein (Core polyprotein) [Contains: Core protein|
           p19; Core protein p23; Core protein p2; Core protein
           p10] (Fragment)
          Length = 239

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 139 APPPPRTARGVFPSVAKRGRREINGG 62
           APPPP    G++PS+A  G ++  GG
Sbjct: 170 APPPPYVGSGLYPSLAGVGEQQGQGG 195

>GAG_AVEV2 (P06937) Gag polyprotein (Core polyprotein) [Contains: Core protein|
           p19 beta; Core protein p10] (Fragment)
          Length = 188

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 139 APPPPRTARGVFPSVAKRGRREINGG 62
           APPPP    G++PS+A  G ++  GG
Sbjct: 119 APPPPYVGSGLYPSLAGVGEQQGQGG 144

>GAG_RSVP (P03322) Gag polyprotein [Contains: Core protein p19; Core protein|
           p2A; Core protein p2B; Core protein p10; Capsid protein
           p27; Inner coat protein p12; Protease p15 (EC 3.4.23.-)]
          Length = 701

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 139 APPPPRTARGVFPSVAKRGRREINGG 62
           APPPP    G++PS+A  G ++  GG
Sbjct: 170 APPPPYVGSGLYPSLAGVGEQQGQGG 195

>GAG_AVIMC (P03323) Gag polyprotein [Contains: Core protein p19; Core protein|
           p10; Core protein p27]
          Length = 453

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 139 APPPPRTARGVFPSVAKRGRREINGG 62
           APPPP    G++PS+A  G ++  GG
Sbjct: 170 APPPPYVGSGLYPSLAGVGEQQGQGG 195

>GAGC_AVISC (P05433) P47(GAG-CRK) protein|
          Length = 440

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 139 APPPPRTARGVFPSVAKRGRREINGG 62
           APPPP    G++PS+A  G ++  GG
Sbjct: 172 APPPPYVGSGLYPSLAGVGEQQGQGG 197

>NCAP_BSCR3 (Q3I5I7) Nucleocapsid protein (N structural protein) (NC)|
          Length = 421

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 102 GNTPRAVRGGGGAS*LSCLVVDAATSARIAVGGREQAQ 215
           GN+P  +  GGG + L+ L++D        V GR Q Q
Sbjct: 204 GNSPARMASGGGETALALLLLDRLNQLESKVSGRSQQQ 241

>GAG_AVIMD (P06444) Gag polyprotein [Contains: Core protein p19; Core protein|
           p10; Core protein p27]
          Length = 453

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 139 APPPPRTARGVFPSVAKRGRREINGG 62
           APPPP    G++PS+A  G  +  GG
Sbjct: 170 APPPPYVGSGLYPSLAGVGELQGQGG 195

>NCAP_CVHSA (P59595) Nucleocapsid protein (N structural protein) (NC)|
          Length = 422

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 102 GNTPRAVRGGGGAS*LSCLVVDAATSARIAVGGREQAQ 215
           GN+P  +  GGG + L+ L++D        V G+ Q Q
Sbjct: 205 GNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQ 242

>MODC_MYCTU (P95155) Molybdenum import ATP-binding protein modC (EC 3.6.3.29)|
          Length = 369

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 129 GGGAS*LSCLVVDAATSARIAVGGR 203
           GG     +C+ VDAAT  R+A G R
Sbjct: 323 GGAPGLAACITVDAATELRVAPGSR 347

>THYG_BOVIN (P01267) Thyroglobulin precursor|
          Length = 2769

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -1

Query: 170 CVDDQTRELXXXXXXADRARCVPECG*KRA 81
           CVD Q REL        R RC  EC  +RA
Sbjct: 637 CVDAQGRELAGSRVRGGRPRCPTECEKQRA 666


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,202,526
Number of Sequences: 219361
Number of extensions: 473142
Number of successful extensions: 1238
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1234
length of database: 80,573,946
effective HSP length: 60
effective length of database: 67,412,286
effective search space used: 1617894864
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)