ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl43g07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AE005101.1| Halobacterium sp. NRC-1 section 132 of 170 of the... 44 0.073
2gb|AC119670.3| Oryza sativa (japonica cultivar-group) chromosome... 42 0.29
3gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome 42 0.29
4dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.29
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.29
6dbj|AP003211.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.29
7emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 42 0.29
8gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 42 0.29
9gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 0.29
10gb|BT009021.1| Triticum aestivum clone wdk3c.pk007.j3:fis, full ... 40 1.1
11dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 40 1.1
12gb|AE005927.1| Caulobacter crescentus CB15 section 253 of 359 of... 40 1.1
13gb|CP000249.1| Frankia sp. CcI3, complete genome 40 1.1
14gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 1.1
15dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.1
16dbj|AP005412.3| Oryza sativa (japonica cultivar-group) genomic D... 40 1.1
17dbj|AK120153.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 1.1
18ref|XM_511330.1| PREDICTED: Pan troglodytes similar to solute ca... 38 4.5
19ref|XM_475110.1| Oryza sativa (japonica cultivar-group), predic... 38 4.5
20gb|AC135929.2| Oryza sativa (japonica cultivar-group) chromosome... 38 4.5
21gb|AY632772.1| Mycobacterium avium hypothetical protein (MA3075p... 38 4.5
22ref|XM_368989.1| Magnaporthe grisea 70-15 chromosome VI hypothet... 38 4.5
23gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 38 4.5
24gb|AC134348.2| Oryza sativa (japonica cultivar-group) chromosome... 38 4.5
25gb|AC164954.3| Culex pipiens quinquefasciatus, clone Culex pipie... 38 4.5
26ref|XM_845928.1| PREDICTED: Canis familiaris similar to Syntaxin... 38 4.5
27ref|XM_857786.1| PREDICTED: Canis familiaris similar to Syntaxin... 38 4.5
28ref|XM_857768.1| PREDICTED: Canis familiaris similar to Syntaxin... 38 4.5
29ref|XM_857747.1| PREDICTED: Canis familiaris similar to Syntaxin... 38 4.5
30gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 38 4.5
31gb|CP000088.1| Thermobifida fusca YX, complete genome 38 4.5
32emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genom... 38 4.5
33emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete ... 38 4.5
34gb|AF480862.1| Bos taurus lambda-crystallin mRNA, complete cds 38 4.5
35dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.5
36dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.5
37ref|NM_174293.2| Bos taurus crystallin, lambda 1 (CRYL1), mRNA 38 4.5
38dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 38 4.5
39dbj|AP006620.1| Nocardia farcinica IFM 10152 plasmid pNF2 DNA, c... 38 4.5
40emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 38 4.5
41gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 38 4.5
42emb|AL731874.4|CNS08C8E Oryza sativa chromosome 12, . BAC OSJNBb... 38 4.5 
>gb|AE005101.1| Halobacterium sp. NRC-1 section 132 of 170 of the complete genome
          Length = 12730

 Score = 44.1 bits (22), Expect = 0.073
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 69   ggtggcggtggtcggcggcggggtga 94
            |||||| |||||||||||||||||||
Sbjct: 7599 ggtggccgtggtcggcggcggggtga 7624
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>gb|AC119670.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0007H22, complete sequence
          Length = 160938

 Score = 42.1 bits (21), Expect = 0.29
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 69    ggtggcggtggtcggcggcggggtg 93
             |||||||||| ||||||||||||||
Sbjct: 31021 ggtggcggtgctcggcggcggggtg 30997
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>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome
          Length = 3665893

 Score = 42.1 bits (21), Expect = 0.29
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 69     ggtggcggtggtcggcggcgg 89
              |||||||||||||||||||||
Sbjct: 138080 ggtggcggtggtcggcggcgg 138100
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 0.29
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 69      ggtggcggtggtcggcggcggggtg 93
               |||||||||| ||||||||||||||
Sbjct: 6855830 ggtggcggtgctcggcggcggggtg 6855854
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 0.29
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 73       gcggtggtcggcggcggggtg 93
                |||||||||||||||||||||
Sbjct: 12376800 gcggtggtcggcggcggggtg 12376780
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>dbj|AP003211.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0011P19
          Length = 150811

 Score = 42.1 bits (21), Expect = 0.29
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 73    gcggtggtcggcggcggggtg 93
             |||||||||||||||||||||
Sbjct: 62445 gcggtggtcggcggcggggtg 62425
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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 42.1 bits (21), Expect = 0.29
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 70     gtggcggtggtcggcggcggg 90
              |||||||||||||||||||||
Sbjct: 503128 gtggcggtggtcggcggcggg 503148
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 42.1 bits (21), Expect = 0.29
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 69      ggtggcggtggtcggcggcgg 89
               |||||||||||||||||||||
Sbjct: 3295667 ggtggcggtggtcggcggcgg 3295687
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 0.29
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 69      ggtggcggtggtcggcggcggggtg 93
               |||||||||| ||||||||||||||
Sbjct: 6922297 ggtggcggtgctcggcggcggggtg 6922321
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>gb|BT009021.1| Triticum aestivum clone wdk3c.pk007.j3:fis, full insert mRNA
           sequence
          Length = 1349

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 66  gagggtggcggtggtcggcggcgg 89
           |||||||| |||||||||||||||
Sbjct: 79  gagggtggtggtggtcggcggcgg 102
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>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 70      gtggcggtggtcggcggcgg 89
               ||||||||||||||||||||
Sbjct: 1831594 gtggcggtggtcggcggcgg 1831575
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>gb|AE005927.1| Caulobacter crescentus CB15 section 253 of 359 of the complete genome
          Length = 14874

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    ggcggtggtcggcggcgggg 91
             ||||||||||||||||||||
Sbjct: 12435 ggcggtggtcggcggcgggg 12416
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 71     tggcggtggtcggcggcggg 90
              ||||||||||||||||||||
Sbjct: 514735 tggcggtggtcggcggcggg 514716
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 72     ggcggtggtcggcggcgggg 91
              ||||||||||||||||||||
Sbjct: 187136 ggcggtggtcggcggcgggg 187155
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 66      gagggtggcggtggtcggcggcgg 89
               |||||||| |||||||||||||||
Sbjct: 2776546 gagggtggtggtggtcggcggcgg 2776569
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>dbj|AP005412.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0050G13
          Length = 150685

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 66    gagggtggcggtggtcggcggcgg 89
             |||||||| |||||||||||||||
Sbjct: 44774 gagggtggtggtggtcggcggcgg 44797
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>dbj|AK120153.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013029P18, full
           insert sequence
          Length = 2277

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 66  gagggtggcggtggtcggcggcgg 89
           |||||||| |||||||||||||||
Sbjct: 100 gagggtggtggtggtcggcggcgg 123
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>ref|XM_511330.1| PREDICTED: Pan troglodytes similar to solute carrier family 5
            (sodium/glucose cotransporter), member 10 (LOC454495),
            mRNA
          Length = 5112

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 81   cggcggcggggtgagtggg 99
            |||||||||||||||||||
Sbjct: 3382 cggcggcggggtgagtggg 3364
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>ref|XM_475110.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1608

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 72   ggcggtggtcggcggcggg 90
            |||||||||||||||||||
Sbjct: 1065 ggcggtggtcggcggcggg 1083
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>gb|AC135929.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0692D12,
            complete sequence
          Length = 164064

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 72   ggcggtggtcggcggcggg 90
            |||||||||||||||||||
Sbjct: 3460 ggcggtggtcggcggcggg 3478
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>gb|AY632772.1| Mycobacterium avium hypothetical protein (MA3075ptb) gene, complete
           cds
          Length = 1530

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 68  gggtggcggtggtcggcggcggg 90
           ||||||||||||| |||||||||
Sbjct: 89  gggtggcggtggtgggcggcggg 111
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>ref|XM_368989.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein
           (MG00255.4) partial mRNA
          Length = 708

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 66  gagggtggcggtggtcggcggcg 88
           |||||||||||||| ||||||||
Sbjct: 183 gagggtggcggtggccggcggcg 161
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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 71      tggcggtggtcggcggcgg 89
               |||||||||||||||||||
Sbjct: 3269662 tggcggtggtcggcggcgg 3269680
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>gb|AC134348.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0530H10,
             complete sequence
          Length = 148373

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 72    ggcggtggtcggcggcggg 90
             |||||||||||||||||||
Sbjct: 52692 ggcggtggtcggcggcggg 52710
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>gb|AC164954.3| Culex pipiens quinquefasciatus, clone Culex pipiens
             quinquefasciatus-3940128D9, complete sequence
          Length = 128585

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 72    ggcggtggtcggcggcggggtga 94
             ||||||||| |||||||||||||
Sbjct: 22399 ggcggtggtgggcggcggggtga 22421
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>ref|XM_845928.1| PREDICTED: Canis familiaris similar to Syntaxin-18, transcript
           variant 1 (LOC609342), mRNA
          Length = 1022

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 70  gtggcggtggtcggcggcggggt 92
           |||||||||| ||||||||||||
Sbjct: 84  gtggcggtgggcggcggcggggt 106
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>ref|XM_857786.1| PREDICTED: Canis familiaris similar to Syntaxin-18, transcript
           variant 4 (LOC609342), mRNA
          Length = 1007

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 70  gtggcggtggtcggcggcggggt 92
           |||||||||| ||||||||||||
Sbjct: 84  gtggcggtgggcggcggcggggt 106
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>ref|XM_857768.1| PREDICTED: Canis familiaris similar to Syntaxin-18, transcript
           variant 3 (LOC609342), mRNA
          Length = 1024

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 70  gtggcggtggtcggcggcggggt 92
           |||||||||| ||||||||||||
Sbjct: 83  gtggcggtgggcggcggcggggt 105
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>ref|XM_857747.1| PREDICTED: Canis familiaris similar to Syntaxin-18, transcript
           variant 2 (LOC609342), mRNA
          Length = 943

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 70  gtggcggtggtcggcggcggggt 92
           |||||||||| ||||||||||||
Sbjct: 83  gtggcggtgggcggcggcggggt 105
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 69      ggtggcggtggtcggcggc 87
               |||||||||||||||||||
Sbjct: 1504482 ggtggcggtggtcggcggc 1504500
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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 68      gggtggcggtggtcggcgg 86
               |||||||||||||||||||
Sbjct: 1691308 gggtggcggtggtcggcgg 1691326
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>emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genome; segment 1/16
          Length = 349315

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 63     gatgagggtggcggtggtcggcg 85
              |||| ||||||||||||||||||
Sbjct: 153160 gatgcgggtggcggtggtcggcg 153138
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>emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete genome; segment 26/29
          Length = 292200

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 76    gtggtcggcggcggggtga 94
             |||||||||||||||||||
Sbjct: 30108 gtggtcggcggcggggtga 30090
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>gb|AF480862.1| Bos taurus lambda-crystallin mRNA, complete cds
          Length = 1466

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 68  gggtggcggtggtcggcggcggg 90
           ||||||||||||||||| |||||
Sbjct: 81  gggtggcggtggtcggcagcggg 103
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 63      gatgagggtggcggtggtcggcg 85
               |||||||||||||||||| ||||
Sbjct: 9528050 gatgagggtggcggtggtgggcg 9528072
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 72       ggcggtggtcggcggcggg 90
                |||||||||||||||||||
Sbjct: 17059325 ggcggtggtcggcggcggg 17059343
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>ref|NM_174293.2| Bos taurus crystallin, lambda 1 (CRYL1), mRNA
          Length = 1466

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 68  gggtggcggtggtcggcggcggg 90
           ||||||||||||||||| |||||
Sbjct: 81  gggtggcggtggtcggcagcggg 103
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 74      cggtggtcggcggcggggtgagt 96
               ||||||||||||||||| |||||
Sbjct: 4098953 cggtggtcggcggcgggttgagt 4098931
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>dbj|AP006620.1| Nocardia farcinica IFM 10152 plasmid pNF2 DNA, complete sequence
          Length = 87093

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 73    gcggtggtcggcggcgggg 91
             |||||||||||||||||||
Sbjct: 10761 gcggtggtcggcggcgggg 10743
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 68      gggtggcggtggtcggcggcggg 90
               |||||| ||||||||||||||||
Sbjct: 3516287 gggtggtggtggtcggcggcggg 3516265
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 63      gatgagggtggcggtggtcggcg 85
               |||||||||||||||||| ||||
Sbjct: 9527935 gatgagggtggcggtggtgggcg 9527957
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>emb|AL731874.4|CNS08C8E Oryza sativa chromosome 12, . BAC OSJNBb0077C18 of library OSJNBb from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 123766

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 63     gatgagggtggcggtggtcggcg 85
              |||||||||||||||||| ||||
Sbjct: 113274 gatgagggtggcggtggtgggcg 113296


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 318,124
Number of Sequences: 3902068
Number of extensions: 318124
Number of successful extensions: 24820
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23780
Number of HSP's gapped (non-prelim): 1040
length of query: 101
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 80
effective length of database: 17,151,101,840
effective search space: 1372088147200
effective search space used: 1372088147200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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