ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl43f12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 163 bits (82), Expect = 4e-37 Identities = 169/198 (85%) Strand = Plus / Plus Query: 114 cccgccgacaatggcggagtcgccggagcagttcaggggccagtcccgcctcccccgatt 173 ||||||| |||||||| ||||||||||||||| |||||||| | || ||||| || | Sbjct: 19014664 cccgccgcaaatggcggcctcgccggagcagttccggggccaggcgcggctcccgcggtg 19014723 Query: 174 cgccgagcccctacgctacgacctcgtcctccgccccgacctcgcggcctgcaccttctc 233 |||| || || ||||||||||| |||||||||||||||||| |||||| ||||||| Sbjct: 19014724 cgcctccccgctcagctacgacctccgcctccgccccgacctcgccgcctgcgccttctc 19014783 Query: 234 cggctccgcgtcggccgccgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgc 293 ||||||||| | | |||||||||||| ||||| || ||||| ||||||||||||||||| Sbjct: 19014784 cggctccgccgccgtcgccgtcgccgtctccgccccgacccgattcctcgtcctcaacgc 19014843 Query: 294 cgccgagctcgccgtcga 311 |||||||||||||||||| Sbjct: 19014844 cgccgagctcgccgtcga 19014861
>dbj|AP003947.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1198_B10 Length = 119768 Score = 163 bits (82), Expect = 4e-37 Identities = 169/198 (85%) Strand = Plus / Plus Query: 114 cccgccgacaatggcggagtcgccggagcagttcaggggccagtcccgcctcccccgatt 173 ||||||| |||||||| ||||||||||||||| |||||||| | || ||||| || | Sbjct: 99584 cccgccgcaaatggcggcctcgccggagcagttccggggccaggcgcggctcccgcggtg 99643 Query: 174 cgccgagcccctacgctacgacctcgtcctccgccccgacctcgcggcctgcaccttctc 233 |||| || || ||||||||||| |||||||||||||||||| |||||| ||||||| Sbjct: 99644 cgcctccccgctcagctacgacctccgcctccgccccgacctcgccgcctgcgccttctc 99703 Query: 234 cggctccgcgtcggccgccgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgc 293 ||||||||| | | |||||||||||| ||||| || ||||| ||||||||||||||||| Sbjct: 99704 cggctccgccgccgtcgccgtcgccgtctccgccccgacccgattcctcgtcctcaacgc 99763 Query: 294 cgccgagctcgccgtcga 311 |||||||||||||||||| Sbjct: 99764 cgccgagctcgccgtcga 99781
>dbj|AK120068.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N11, full insert sequence Length = 2975 Score = 163 bits (82), Expect = 4e-37 Identities = 169/198 (85%) Strand = Plus / Plus Query: 114 cccgccgacaatggcggagtcgccggagcagttcaggggccagtcccgcctcccccgatt 173 ||||||| |||||||| ||||||||||||||| |||||||| | || ||||| || | Sbjct: 90 cccgccgcaaatggcggcctcgccggagcagttccggggccaggcgcggctcccgcggtg 149 Query: 174 cgccgagcccctacgctacgacctcgtcctccgccccgacctcgcggcctgcaccttctc 233 |||| || || ||||||||||| |||||||||||||||||| |||||| ||||||| Sbjct: 150 cgcctccccgctcagctacgacctccgcctccgccccgacctcgccgcctgcgccttctc 209 Query: 234 cggctccgcgtcggccgccgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgc 293 ||||||||| | | |||||||||||| ||||| || ||||| ||||||||||||||||| Sbjct: 210 cggctccgccgccgtcgccgtcgccgtctccgccccgacccgattcctcgtcctcaacgc 269 Query: 294 cgccgagctcgccgtcga 311 |||||||||||||||||| Sbjct: 270 cgccgagctcgccgtcga 287
>dbj|AP003904.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1051_A08 Length = 137583 Score = 163 bits (82), Expect = 4e-37 Identities = 169/198 (85%) Strand = Plus / Plus Query: 114 cccgccgacaatggcggagtcgccggagcagttcaggggccagtcccgcctcccccgatt 173 ||||||| |||||||| ||||||||||||||| |||||||| | || ||||| || | Sbjct: 39451 cccgccgcaaatggcggcctcgccggagcagttccggggccaggcgcggctcccgcggtg 39510 Query: 174 cgccgagcccctacgctacgacctcgtcctccgccccgacctcgcggcctgcaccttctc 233 |||| || || ||||||||||| |||||||||||||||||| |||||| ||||||| Sbjct: 39511 cgcctccccgctcagctacgacctccgcctccgccccgacctcgccgcctgcgccttctc 39570 Query: 234 cggctccgcgtcggccgccgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgc 293 ||||||||| | | |||||||||||| ||||| || ||||| ||||||||||||||||| Sbjct: 39571 cggctccgccgccgtcgccgtcgccgtctccgccccgacccgattcctcgtcctcaacgc 39630 Query: 294 cgccgagctcgccgtcga 311 |||||||||||||||||| Sbjct: 39631 cgccgagctcgccgtcga 39648
>ref|XM_482249.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2685 Score = 159 bits (80), Expect = 7e-36 Identities = 161/188 (85%) Strand = Plus / Plus Query: 124 atggcggagtcgccggagcagttcaggggccagtcccgcctcccccgattcgccgagccc 183 ||||||| ||||||||||||||| |||||||| | || ||||| || | |||| || Sbjct: 1 atggcggcctcgccggagcagttccggggccaggcgcggctcccgcggtgcgcctccccg 60 Query: 184 ctacgctacgacctcgtcctccgccccgacctcgcggcctgcaccttctccggctccgcg 243 || ||||||||||| |||||||||||||||||| |||||| |||||||||||||||| Sbjct: 61 ctcagctacgacctccgcctccgccccgacctcgccgcctgcgccttctccggctccgcc 120 Query: 244 tcggccgccgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgccgccgagctc 303 | | |||||||||||| ||||| || ||||| ||||||||||||||||||||||||||| Sbjct: 121 gccgtcgccgtcgccgtctccgccccgacccgattcctcgtcctcaacgccgccgagctc 180 Query: 304 gccgtcga 311 |||||||| Sbjct: 181 gccgtcga 188
>ref|XM_450615.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2622 Score = 99.6 bits (50), Expect = 5e-18 Identities = 59/62 (95%) Strand = Plus / Plus Query: 250 gccgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgccgccgagctcgccgtc 309 ||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 127 gccgtcgacgtctccgcgcccacccgcttcctcgtcctcaacgccgccgacctcgccgtc 186 Query: 310 ga 311 || Sbjct: 187 ga 188
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 99.6 bits (50), Expect = 5e-18 Identities = 59/62 (95%) Strand = Plus / Plus Query: 250 gccgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgccgccgagctcgccgtc 309 ||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 11799403 gccgtcgacgtctccgcgcccacccgcttcctcgtcctcaacgccgccgacctcgccgtc 11799462 Query: 310 ga 311 || Sbjct: 11799463 ga 11799464 Score = 95.6 bits (48), Expect = 8e-17 Identities = 57/60 (95%) Strand = Plus / Plus Query: 252 cgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgccgccgagctcgccgtcga 311 ||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 11790221 cgtcgacgtctccgcgcccacccgcttcctcgtcctcaacgccgccgacctcgccgtcga 11790280 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 cgccgccgagctcgccgtcg 310 |||||||||||||||||||| Sbjct: 18959982 cgccgccgagctcgccgtcg 18960001
>dbj|AP005572.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1506_A04 Length = 114998 Score = 99.6 bits (50), Expect = 5e-18 Identities = 59/62 (95%) Strand = Plus / Plus Query: 250 gccgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgccgccgagctcgccgtc 309 ||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 42221 gccgtcgacgtctccgcgcccacccgcttcctcgtcctcaacgccgccgacctcgccgtc 42280 Query: 310 ga 311 || Sbjct: 42281 ga 42282 Score = 95.6 bits (48), Expect = 8e-17 Identities = 57/60 (95%) Strand = Plus / Plus Query: 252 cgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgccgccgagctcgccgtcga 311 ||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 33039 cgtcgacgtctccgcgcccacccgcttcctcgtcctcaacgccgccgacctcgccgtcga 33098
>ref|XM_450614.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2984 Score = 95.6 bits (48), Expect = 8e-17 Identities = 57/60 (95%) Strand = Plus / Plus Query: 252 cgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgccgccgagctcgccgtcga 311 ||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 124 cgtcgacgtctccgcgcccacccgcttcctcgtcctcaacgccgccgacctcgccgtcga 183
>dbj|AK068165.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134N07, full insert sequence Length = 2985 Score = 95.6 bits (48), Expect = 8e-17 Identities = 57/60 (95%) Strand = Plus / Plus Query: 252 cgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgccgccgagctcgccgtcga 311 ||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 125 cgtcgacgtctccgcgcccacccgcttcctcgtcctcaacgccgccgacctcgccgtcga 184
>ref|XM_464667.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3020 Score = 56.0 bits (28), Expect = 7e-05 Identities = 37/40 (92%) Strand = Plus / Plus Query: 265 gcgcccacccgcttcctcgtcctcaacgccgccgagctcg 304 ||||||||| | |||||||| ||||||||||||||||||| Sbjct: 256 gcgcccaccaggttcctcgtgctcaacgccgccgagctcg 295 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 cggagcagttcaggggccag 156 |||||||||||||||||||| Sbjct: 128 cggagcagttcaggggccag 147
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 56.0 bits (28), Expect = 7e-05 Identities = 37/40 (92%) Strand = Plus / Plus Query: 265 gcgcccacccgcttcctcgtcctcaacgccgccgagctcg 304 ||||||||| | |||||||| ||||||||||||||||||| Sbjct: 6598577 gcgcccaccaggttcctcgtgctcaacgccgccgagctcg 6598616 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 239 ccgcgtcggccgccgtcgccg 259 ||||||||||||||||||||| Sbjct: 33365600 ccgcgtcggccgccgtcgccg 33365620 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 cgccgccgagctcgccgtcga 311 ||||||||||||||||||||| Sbjct: 4966777 cgccgccgagctcgccgtcga 4966757 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 195 cctcgtcctccgccccgacctcgc 218 |||| ||||||||||||||||||| Sbjct: 22935054 cctcctcctccgccccgacctcgc 22935031 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 cggagcagttcaggggccag 156 |||||||||||||||||||| Sbjct: 6598449 cggagcagttcaggggccag 6598468
>dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0027A02 Length = 140402 Score = 56.0 bits (28), Expect = 7e-05 Identities = 37/40 (92%) Strand = Plus / Plus Query: 265 gcgcccacccgcttcctcgtcctcaacgccgccgagctcg 304 ||||||||| | |||||||| ||||||||||||||||||| Sbjct: 32952 gcgcccaccaggttcctcgtgctcaacgccgccgagctcg 32991 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 cggagcagttcaggggccag 156 |||||||||||||||||||| Sbjct: 32824 cggagcagttcaggggccag 32843
>dbj|AK066996.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089H24, full insert sequence Length = 3020 Score = 56.0 bits (28), Expect = 7e-05 Identities = 37/40 (92%) Strand = Plus / Plus Query: 265 gcgcccacccgcttcctcgtcctcaacgccgccgagctcg 304 ||||||||| | |||||||| ||||||||||||||||||| Sbjct: 256 gcgcccaccaggttcctcgtgctcaacgccgccgagctcg 295 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 cggagcagttcaggggccag 156 |||||||||||||||||||| Sbjct: 128 cggagcagttcaggggccag 147
>ref|XM_468154.1| Oryza sativa (japonica cultivar-group), mRNA Length = 924 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 239 ccgcgtcggccgccgtcgccg 259 ||||||||||||||||||||| Sbjct: 151 ccgcgtcggccgccgtcgccg 131
>ref|XM_473844.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2910 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 291 cgccgccgagctcgccgtcga 311 ||||||||||||||||||||| Sbjct: 309 cgccgccgagctcgccgtcga 329
>gb|AC135423.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0015C02, complete sequence Length = 147407 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 218 cggcctgcaccttctccggctccgc 242 ||||||||||||||||| ||||||| Sbjct: 26988 cggcctgcaccttctcccgctccgc 27012
>gb|AC121364.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0052E20, complete sequence Length = 162434 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 218 cggcctgcaccttctccggctccgc 242 ||||||||||||||||| ||||||| Sbjct: 68521 cggcctgcaccttctcccgctccgc 68545
>emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085I10, complete sequence Length = 150551 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 cgccgccgagctcgccgtcga 311 ||||||||||||||||||||| Sbjct: 50238 cgccgccgagctcgccgtcga 50218
>gb|AC104082.3| Homo sapiens BAC clone RP11-570L13 from 4, complete sequence Length = 182770 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 56 gaagctactgtgttcagaaaa 76 ||||||||||||||||||||| Sbjct: 21600 gaagctactgtgttcagaaaa 21620
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 cgccgccgagctcgccgtcga 311 ||||||||||||||||||||| Sbjct: 35300808 cgccgccgagctcgccgtcga 35300788 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 cgccgccgagctcgccgtcga 311 ||||||||||||||||||||| Sbjct: 30952866 cgccgccgagctcgccgtcga 30952846
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 218 cggcctgcaccttctccggctccgc 242 ||||||||||||||||| ||||||| Sbjct: 22964508 cggcctgcaccttctcccgctccgc 22964532 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 cgccgccgagctcgccgtcg 310 |||||||||||||||||||| Sbjct: 22308796 cgccgccgagctcgccgtcg 22308815
>dbj|AP005849.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0031B09 Length = 132729 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 cgccgccgagctcgccgtcga 311 ||||||||||||||||||||| Sbjct: 37903 cgccgccgagctcgccgtcga 37883
>dbj|AP004046.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1145_F01 Length = 113755 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 cgccgccgagctcgccgtcga 311 ||||||||||||||||||||| Sbjct: 111516 cgccgccgagctcgccgtcga 111496
>dbj|AP004095.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1715_H01 Length = 138733 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 239 ccgcgtcggccgccgtcgccg 259 ||||||||||||||||||||| Sbjct: 106350 ccgcgtcggccgccgtcgccg 106370
>dbj|AK069780.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028F19, full insert sequence Length = 3290 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 218 cggcctgcaccttctccggctccgc 242 ||||||||||||||||| ||||||| Sbjct: 212 cggcctgcaccttctcccgctccgc 188
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 278 tcctcgtcctcaacgccgccg 298 ||||||||||||||||||||| Sbjct: 2668988 tcctcgtcctcaacgccgccg 2668968
>emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0702G05, complete sequence Length = 134586 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 cgccgccgagctcgccgtcga 311 ||||||||||||||||||||| Sbjct: 129870 cgccgccgagctcgccgtcga 129850
>emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039K24, complete sequence Length = 173770 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 cgccgccgagctcgccgtcga 311 ||||||||||||||||||||| Sbjct: 96653 cgccgccgagctcgccgtcga 96633
>gb|AC168019.4| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940127D9, complete sequence Length = 102832 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 291 cgccgccgagctcgccgtcga 311 ||||||||||||||||||||| Sbjct: 3247 cgccgccgagctcgccgtcga 3267
>ref|XM_466490.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1768 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 195 cctcgtcctccgccccgacctcgc 218 |||| ||||||||||||||||||| Sbjct: 6 cctcctcctccgccccgacctcgc 29
>ref|NM_191023.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 891 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 cgccgccgagctcgccgtcg 310 |||||||||||||||||||| Sbjct: 795 cgccgccgagctcgccgtcg 776
>gb|AC099404.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0019D02, complete sequence Length = 154692 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 cgccgccgagctcgccgtcg 310 |||||||||||||||||||| Sbjct: 5244 cgccgccgagctcgccgtcg 5263
>gb|AC105770.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_D02, complete sequence Length = 131860 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 cgccgccgagctcgccgtcg 310 |||||||||||||||||||| Sbjct: 10431 cgccgccgagctcgccgtcg 10450
>gb|AC151537.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0087D01, complete sequence Length = 83225 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 cgccgccgagctcgccgtcg 310 |||||||||||||||||||| Sbjct: 27684 cgccgccgagctcgccgtcg 27703
>gb|AC151407.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0073M15, complete sequence Length = 143071 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 cgccgccgagctcgccgtcg 310 |||||||||||||||||||| Sbjct: 106583 cgccgccgagctcgccgtcg 106602
>gb|AC144700.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0017H17, complete sequence Length = 156331 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 cgccgagctcgccgtcgatc 313 |||||||||||||||||||| Sbjct: 93833 cgccgagctcgccgtcgatc 93814 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 cgccgagctcgccgtcgatc 313 |||||||||||||||||||| Sbjct: 89317 cgccgagctcgccgtcgatc 89298
>gb|AC166568.2| Spironucleus vortens clone JGIBAWF-9N8, complete sequence Length = 38345 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 284 tcctcaacgccgccgagctcgccg 307 |||||| ||||||||||||||||| Sbjct: 23810 tcctcaccgccgccgagctcgccg 23833
>emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207F1 complete genome Length = 124321 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 cgccgccgagctcgccgtcg 310 |||||||||||||||||||| Sbjct: 60972 cgccgccgagctcgccgtcg 60991
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 245 cggccgccgtcgccgtgtccgcgc 268 ||||||||||||||||| |||||| Sbjct: 507228 cggccgccgtcgccgtggccgcgc 507205
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 gccgccgagctcgccgtcga 311 |||||||||||||||||||| Sbjct: 14154294 gccgccgagctcgccgtcga 14154275 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 cgccgccgagctcgccgtcg 310 |||||||||||||||||||| Sbjct: 4922019 cgccgccgagctcgccgtcg 4922038
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 cgccgagctcgccgtcgatc 313 |||||||||||||||||||| Sbjct: 21882990 cgccgagctcgccgtcgatc 21882971 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 cgccgagctcgccgtcgatc 313 |||||||||||||||||||| Sbjct: 21878474 cgccgagctcgccgtcgatc 21878455
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 cggagcagttcaggggccag 156 |||||||||||||||||||| Sbjct: 12319113 cggagcagttcaggggccag 12319094
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 cgccgccgagctcgccgtcg 310 |||||||||||||||||||| Sbjct: 34362544 cgccgccgagctcgccgtcg 34362525
>gb|AY741536.1| Pennisetum glaucum TEL1 gene, partial sequence Length = 3162 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 cgccgccgagctcgccgtcg 310 |||||||||||||||||||| Sbjct: 305 cgccgccgagctcgccgtcg 324
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 gctccgcgtcggccgccgtc 255 |||||||||||||||||||| Sbjct: 3883160 gctccgcgtcggccgccgtc 3883179
>dbj|AP003260.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0468B07 Length = 169071 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 cgccgccgagctcgccgtcg 310 |||||||||||||||||||| Sbjct: 44888 cgccgccgagctcgccgtcg 44869
>dbj|AP003511.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0578B12 Length = 151192 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 cggagcagttcaggggccag 156 |||||||||||||||||||| Sbjct: 35573 cggagcagttcaggggccag 35554
>dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0016G10 Length = 143211 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 195 cctcgtcctccgccccgacctcgc 218 |||| ||||||||||||||||||| Sbjct: 54856 cctcctcctccgccccgacctcgc 54833
>emb|AL713953.3|CNS07YPY Oryza sativa chromosome 12, . BAC OJ1134_A05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 120825 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 cgccgccgagctcgccgtcg 310 |||||||||||||||||||| Sbjct: 16403 cgccgccgagctcgccgtcg 16384
>dbj|AK069742.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030E07, full insert sequence Length = 1764 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 195 cctcgtcctccgccccgacctcgc 218 |||| ||||||||||||||||||| Sbjct: 6 cctcctcctccgccccgacctcgc 29
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 cgccgagctcgccgtcgatc 313 |||||||||||||||||||| Sbjct: 22193189 cgccgagctcgccgtcgatc 22193170 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 cgccgagctcgccgtcgatc 313 |||||||||||||||||||| Sbjct: 22188673 cgccgagctcgccgtcgatc 22188654
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 gccgccgagctcgccgtcga 311 |||||||||||||||||||| Sbjct: 14108574 gccgccgagctcgccgtcga 14108555 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 cgccgccgagctcgccgtcg 310 |||||||||||||||||||| Sbjct: 4922001 cgccgccgagctcgccgtcg 4922020
>emb|AL732644.3|CNS08C9J Oryza sativa chromosome 12, . BAC OSJNBa0016A01 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 150703 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 gccgccgagctcgccgtcga 311 |||||||||||||||||||| Sbjct: 80835 gccgccgagctcgccgtcga 80816
>emb|BX536967.2|CNS09SBH Oryza sativa chromosome 12, . BAC OSJNBa0029N15 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141053 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 cgccgccgagctcgccgtcg 310 |||||||||||||||||||| Sbjct: 37940 cgccgccgagctcgccgtcg 37921 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,255,529 Number of Sequences: 3902068 Number of extensions: 2255529 Number of successful extensions: 52819 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51314 Number of HSP's gapped (non-prelim): 1500 length of query: 317 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 295 effective length of database: 17,147,199,772 effective search space: 5058423932740 effective search space used: 5058423932740 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
