>ref|XM_477026.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3193

 Score =  105 bits (53), Expect = 7e-20
 Identities = 68/73 (93%)
 Strand = Plus / Plus

                                                                       
Query: 207 gccatgtcgcagccgctcgtcgtgaagaaggacgacgacttacacgaggaagagtactac 266
           |||||| |||||||||||||||||||||||||||||||  |  |||||||||||||||||
Sbjct: 227 gccatggcgcagccgctcgtcgtgaagaaggacgacgatctcgacgaggaagagtactac 286

                        
Query: 267 tcgccgttcctcg 279
           |||||||||||||
Sbjct: 287 tcgccgttcctcg 299

>dbj|AK100095.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004B12, full
           insert sequence
          Length = 3193

 Score =  105 bits (53), Expect = 7e-20
 Identities = 68/73 (93%)
 Strand = Plus / Plus

                                                                       
Query: 207 gccatgtcgcagccgctcgtcgtgaagaaggacgacgacttacacgaggaagagtactac 266
           |||||| |||||||||||||||||||||||||||||||  |  |||||||||||||||||
Sbjct: 227 gccatggcgcagccgctcgtcgtgaagaaggacgacgatctcgacgaggaagagtactac 286

                        
Query: 267 tcgccgttcctcg 279
           |||||||||||||
Sbjct: 287 tcgccgttcctcg 299

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                     
Query: 207     gccatgtcgcagccgctcgtcgtgaagaaggacgacga 244
               |||||| |||||||||||||||||||||||||||||||
Sbjct: 5484550 gccatggcgcagccgctcgtcgtgaagaaggacgacga 5484587



 Score = 46.1 bits (23), Expect = 0.059
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 257     agagtactactcgccgttcctcg 279
               |||||||||||||||||||||||
Sbjct: 5484834 agagtactactcgccgttcctcg 5484856



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 54       cttcctcctctctcctgttc 73
                ||||||||||||||||||||
Sbjct: 10754361 cttcctcctctctcctgttc 10754380

>dbj|AP005259.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0519E02
          Length = 139321

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                    
Query: 207    gccatgtcgcagccgctcgtcgtgaagaaggacgacga 244
              |||||| |||||||||||||||||||||||||||||||
Sbjct: 118531 gccatggcgcagccgctcgtcgtgaagaaggacgacga 118568



 Score = 46.1 bits (23), Expect = 0.059
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 257    agagtactactcgccgttcctcg 279
              |||||||||||||||||||||||
Sbjct: 118815 agagtactactcgccgttcctcg 118837

>gb|AC126333.7| Homo sapiens chromosome 8, clone RP11-666I19, complete sequence
          Length = 127374

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 52    ctcttcctcctctctcctgttc 73
             ||||||||||||||||||||||
Sbjct: 22687 ctcttcctcctctctcctgttc 22708

>gb|AF188030.5| Homo sapiens chromosome 8 clone RP4-593A12 map p23, complete sequence
          Length = 151329

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 52    ctcttcctcctctctcctgttc 73
             ||||||||||||||||||||||
Sbjct: 93539 ctcttcctcctctctcctgttc 93518

>gb|AF214636.4| Homo sapiens chromosome 8 clone RP4-605G11 map p23, complete sequence
          Length = 95741

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 52    ctcttcctcctctctcctgttc 73
             ||||||||||||||||||||||
Sbjct: 11821 ctcttcctcctctctcctgttc 11800

>gb|AC135112.5| Mus musculus BAC clone RP23-477F17 from chromosome unknown, complete
              sequence
          Length = 178498

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 51     cctcttcctcctctctcctgttcagtcctc 80
              ||||||||||||||||||| || |||||||
Sbjct: 119184 cctcttcctcctctctcctttttagtcctc 119155

>emb|BX294183.17| Mouse DNA sequence from clone RP24-388B10 on chromosome X, complete
              sequence
          Length = 184943

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 51     cctcttcctcctctctcctgttcagtcctc 80
              ||||||||||||||||||| || |||||||
Sbjct: 162198 cctcttcctcctctctcctttttagtcctc 162227

>gb|AC154247.2| Mus musculus BAC clone RP24-176G22 from chromosome 17, complete
             sequence
          Length = 162175

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 64    tctcctgttcagtcctccctcg 85
             ||||||||||||||||||||||
Sbjct: 60120 tctcctgttcagtcctccctcg 60141

>dbj|AB039951.1| Bacillus subtilis yuxH, yuzC, degQ, comQ, comX, comP, comA, yuxO
           genes, partial and complete cds
          Length = 6114

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 105 ctcgcgggagctctcgcgccgc 126
           ||||||||||||||||||||||
Sbjct: 516 ctcgcgggagctctcgcgccgc 495

>dbj|AB010576.1| Bacillus subtilis ComX, ComQ and DegQ genes, complete cds
          Length = 2517

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 105 ctcgcgggagctctcgcgccgc 126
           ||||||||||||||||||||||
Sbjct: 516 ctcgcgggagctctcgcgccgc 495

>ref|XM_472252.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1806

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 121 cgccgccccgctccgccgccg 141
           |||||||||||||||||||||
Sbjct: 180 cgccgccccgctccgccgccg 160

>gb|AY519500.1| Gallus gallus CNR/Pcdh-alpha gene cluster, complete sequence
          Length = 187517

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 126    ccccgctccgccgccgttctc 146
              |||||||||||||||||||||
Sbjct: 105985 ccccgctccgccgccgttctc 105965

>emb|AL731619.3|OSJN00267 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084N21,
            complete sequence
          Length = 143093

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 121  cgccgccccgctccgccgccg 141
            |||||||||||||||||||||
Sbjct: 6906 cgccgccccgctccgccgccg 6886

>gb|AC090649.4| Genomic sequence for Mus musculus, clone RP23-361O12, complete sequence
          Length = 211611

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 51    cctcttcctcctctctcctgt 71
             |||||||||||||||||||||
Sbjct: 75898 cctcttcctcctctctcctgt 75878

>ref|NG_004818.1| Gallus gallus cadherin-related neuronal receptor 10 pseudogene (CNRV10)
          Length = 98944

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 126   ccccgctccgccgccgttctc 146
             |||||||||||||||||||||
Sbjct: 27526 ccccgctccgccgccgttctc 27506

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 121      cgccgccccgctccgccgccg 141
                |||||||||||||||||||||
Sbjct: 18790996 cgccgccccgctccgccgccg 18790976

>emb|AL662977.3|OSJN00176 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072D21,
              complete sequence
          Length = 160456

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 121    cgccgccccgctccgccgccg 141
              |||||||||||||||||||||
Sbjct: 140159 cgccgccccgctccgccgccg 140139

>gb|AC008254.7|AC008254 Drosophila melanogaster, chromosome 3R, region 85C-85C, BAC clone
             BACR02G22, complete sequence
          Length = 164982

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 56    tcctcctctctcctgttcagtcctc 80
             |||||||||||||||||| ||||||
Sbjct: 69437 tcctcctctctcctgttctgtcctc 69413

>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 147    gcggcatagcggtcgacccgggcgc 171
              ||||||||||||||||| |||||||
Sbjct: 362798 gcggcatagcggtcgacgcgggcgc 362774

>gb|AE003680.4| Drosophila melanogaster chromosome 3R, section 18 of 118 of the complete
              sequence
          Length = 270517

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 56     tcctcctctctcctgttcagtcctc 80
              |||||||||||||||||| ||||||
Sbjct: 267285 tcctcctctctcctgttctgtcctc 267261

>gb|AC128644.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0009F15,
              complete sequence
          Length = 142289

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 130    gctccgccgccgttctcgcggcat 153
              |||||||||||| |||||||||||
Sbjct: 112345 gctccgccgccgctctcgcggcat 112322

>gb|AC133954.3| Mus musculus BAC clone RP23-154C17 from chromosome 5, complete sequence
          Length = 199991

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 52     ctcttcctcctctctcctgt 71
              ||||||||||||||||||||
Sbjct: 135518 ctcttcctcctctctcctgt 135537

>gb|AC132100.3| Mus musculus BAC clone RP24-294D10 from chromosome 18, complete
             sequence
          Length = 173949

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    cctcctctctcctgttcagt 76
             ||||||||||||||||||||
Sbjct: 96813 cctcctctctcctgttcagt 96832

>emb|CR848714.6| Wallaby DNA sequence from clone MEKBa-460J13, complete sequence
          Length = 186287

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     ctcttcctcctctctcctgt 71
              ||||||||||||||||||||
Sbjct: 156270 ctcttcctcctctctcctgt 156251

>gb|AC151605.2| Emiliania huxleyi clone JGIACCU-13A3, complete sequence
          Length = 36153

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   tcgcgccgccccgctccgcc 137
             ||||||||||||||||||||
Sbjct: 31314 tcgcgccgccccgctccgcc 31295

>gb|U65510.1|RRU65510 Rhodospirillum rubrum alkyl hydroperoxide reductase (ahpC) gene,
             partial cds; CooM (cooM), CooK (cooK), CooL (cooL), CooX
             (cooX), CooU (cooU), CooH (cooH), iron sulfur protein
             (cooF), carbon monoxide dehydrogenase (cooS), CooC (cooC),
             CooT (cooT), CooJ (cooJ), putative transcriptional
             activator; similar to cAMP-receptor (CAP, CRP) protein:
             PIR Accession Number A26049; similar to fnr (nirR) gene
             product encoded by GenBank Accession Number J01608;
             aspartic acid-rich C-terminus similar to acidic region of
             HMG (high mobility group) protei (cooA), and
             nicotinate-nucleotide pyrophosphorylase (nadC) genes,
             complete cds; L-aspartate oxidase (nadB) gene, partial
             cds; and unknown gene
          Length = 16259

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 120   gcgccgccccgctccgccgc 139
             ||||||||||||||||||||
Sbjct: 15846 gcgccgccccgctccgccgc 15827

>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 120     gcgccgccccgctccgccgc 139
               ||||||||||||||||||||
Sbjct: 1691662 gcgccgccccgctccgccgc 1691643

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 130     gctccgccgccgttctcgcggcat 153
               |||||||||||| |||||||||||
Sbjct: 4460982 gctccgccgccgctctcgcggcat 4460959

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 122     gccgccccgctccgccgccg 141
               ||||||||||||||||||||
Sbjct: 2744303 gccgccccgctccgccgccg 2744322

>gb|AC104648.2| Homo sapiens BAC clone RP11-45D4 from 2, complete sequence
          Length = 112084

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    ttcctcctctctcctgttca 74
             ||||||||||||||||||||
Sbjct: 47456 ttcctcctctctcctgttca 47475

>dbj|AP005260.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0557D09
          Length = 135315

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    cttcctcctctctcctgttc 73
             ||||||||||||||||||||
Sbjct: 83807 cttcctcctctctcctgttc 83826

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 130     gctccgccgccgttctcgcggcat 153
               |||||||||||| |||||||||||
Sbjct: 4469676 gctccgccgccgctctcgcggcat 4469653

>emb|AL590430.8| Mouse DNA sequence from clone RP23-384K10 on chromosome 2, complete
             sequence
          Length = 144909

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    tcttcctcctctctcctgtt 72
             ||||||||||||||||||||
Sbjct: 38565 tcttcctcctctctcctgtt 38546

>emb|AL732513.8| Mouse DNA sequence from clone RP23-344B24 on chromosome 2, complete
             sequence
          Length = 209452

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    gcctcttcctcctctctcct 69
             ||||||||||||||||||||
Sbjct: 54386 gcctcttcctcctctctcct 54405

>dbj|AB046872.1| Physcomitrella patens Sig2 mRNA for PpSIG2, complete cds
          Length = 2207

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 49  cgcctcttcctcctctctcc 68
           ||||||||||||||||||||
Sbjct: 918 cgcctcttcctcctctctcc 899

>dbj|AB059356.1| Physcomitrella patens Sig2 gene for PpSIG2, complete cds
          Length = 3439

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 49   cgcctcttcctcctctctcc 68
            ||||||||||||||||||||
Sbjct: 1427 cgcctcttcctcctctctcc 1408


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,026,874
Number of Sequences: 3902068
Number of extensions: 2026874
Number of successful extensions: 58759
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58291
Number of HSP's gapped (non-prelim): 468
length of query: 279
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 257
effective length of database: 17,147,199,772
effective search space: 4406830341404
effective search space used: 4406830341404
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)