Clone Information

BLAST Search Result

Clone Name	bastl43f10
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ICP0_EHV1V (P84445) Trans-acting transcriptional protein ICP0 (I...	36	0.029
2	ICP0_EHV1B (P28990) Trans-acting transcriptional protein ICP0	36	0.029
3	CAC1B_HUMAN (Q00975) Voltage-dependent N-type calcium channel al...	35	0.049
4	KIF1C_MOUSE (O35071) Kinesin-like protein KIF1C	32	0.32
5	RSP2_CAEEL (Q23120) Probable splicing factor, arginine/serine-ri...	32	0.54
6	SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1	32	0.54
7	PKAA_STRCO (P54739) Serine/threonine protein kinase pkaA (EC 2.7...	32	0.54
8	SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1...	31	0.71
9	RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-ri...	30	1.2
10	IF2_PROAC (Q6A7M5) Translation initiation factor IF-2	30	1.2
11	RSP7_CAEEL (O01159) Probable splicing factor, arginine/serine-ri...	30	1.2
12	PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-bindi...	30	1.6
13	NPAS3_MOUSE (Q9QZQ0) Neuronal PAS domain protein 3 (Neuronal PAS...	30	1.6
14	XYLT1_PANTR (Q5QQ57) Xylosyltransferase 1 (EC 2.4.2.26) (Xylosyl...	30	2.1
15	VE2_HPV1A (P03118) Regulatory protein E2	30	2.1
16	SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)	29	2.7
17	FOG1_MOUSE (O35615) Zinc finger protein ZFPM1 (Zinc finger prote...	29	2.7
18	MMP16_RAT (O35548) Matrix metalloproteinase-16 precursor (EC 3.4...	29	3.5
19	MMP16_HUMAN (P51512) Matrix metalloproteinase-16 precursor (EC 3...	29	3.5
20	FA47A_HUMAN (Q5JRC9) Protein FAM47A	29	3.5
21	SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1...	29	3.5
22	VGLE_CHV1 (P30816) Glycoprotein E homolog (Fragment)	29	3.5
23	IF2_NITWN (Q3SWP9) Translation initiation factor IF-2	29	3.5
24	SREC2_HUMAN (Q96GP6) Scavenger receptor class F member 2 precurs...	29	3.5
25	RPOA_PRRSB (Q8B912) Replicase polyprotein 1ab (ORF1ab polyprotei...	29	3.5
26	CABP4_BOVIN (Q8HZJ4) Calcium-binding protein 4 (CaBP4)	29	3.5
27	YA4E_SCHPO (Q09731) Hypothetical WD-repeat protein C31A2.14 in c...	29	3.5
28	PDLI7_HUMAN (Q9NR12) PDZ and LIM domain protein 7 (LIM mineraliz...	28	4.6
29	INO80_ASPFU (Q4WTV7) Putative DNA helicase ino80 (EC 3.6.1.-)	28	4.6
30	PDE3A_HUMAN (Q14432) cGMP-inhibited 3',5'-cyclic phosphodiestera...	28	4.6
31	SNUT3_HUMAN (Q8WVK2) U4/U6.U5 tri-snRNP-associated protein 3 (U4...	28	4.6
32	HMDH_GIBFU (Q12577) 3-hydroxy-3-methylglutaryl-coenzyme A reduct...	28	4.6
33	WASIP_HUMAN (O43516) Wiskott-Aldrich syndrome protein-interactin...	28	4.6
34	CBLB_XENTR (Q6DFR2) E3 ubiquitin-protein ligase CBL-B (EC 6.3.2....	28	4.6
35	CBLB_HUMAN (Q13191) E3 ubiquitin-protein ligase CBL-B (EC 6.3.2....	28	4.6
36	KIF1C_HUMAN (O43896) Kinesin-like protein KIF1C	28	4.6
37	CD2A2_HUMAN (Q8N726) Cyclin-dependent kinase inhibitor 2A, isofo...	28	6.0
38	CWC21_USTMA (Q4P0G6) Pre-mRNA-splicing factor CWC21	28	6.0
39	XYLT1_HUMAN (Q86Y38) Xylosyltransferase 1 (EC 2.4.2.26) (Xylosyl...	28	6.0
40	CWC22_MAGGR (Q52B63) Pre-mRNA-splicing factor CWC22	28	6.0
41	CSKP_MOUSE (O70589) Peripheral plasma membrane protein CASK (EC ...	28	6.0
42	UL61_HCMVA (P16818) Hypothetical protein UL61	28	6.0
43	SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1	28	6.0
44	SPEG_HUMAN (Q15772) Striated muscle preferentially expressed pro...	28	6.0
45	PTN23_HUMAN (Q9H3S7) Tyrosine-protein phosphatase non-receptor t...	28	6.0
46	OST6_MOUSE (Q5GFD5) Heparan sulfate glucosamine 3-O-sulfotransfe...	28	6.0
47	PG20_MYCTU (O53416) Hypothetical PE-PGRS family protein PE_PGRS20	24	6.0
48	MYSC_ACACA (P10569) Myosin IC heavy chain	28	7.8
49	GPR_BACME (P22321) Germination protease precursor (EC 3.4.24.78)...	28	7.8
50	CWC22_USTMA (Q4PCY0) Pre-mRNA-splicing factor CWC22	28	7.8
51	CBLBB_XENLA (Q6NRE7) E3 ubiquitin-protein ligase CBL-B-B (EC 6.3...	28	7.8
52	MMP16_MOUSE (Q9WTR0) Matrix metalloproteinase-16 precursor (EC 3...	28	7.8
53	CXCC1_MOUSE (Q9CWW7) CpG-binding protein (PHD finger and CXXC do...	28	7.8
54	CAC1A_RAT (P54282) Voltage-dependent P/Q-type calcium channel al...	28	7.8
55	VASHL_MOUSE (Q8C5G2) Vasohibin-like protein	28	7.8
56	RS3_BURS3 (Q39KG1) 30S ribosomal protein S3	28	7.8
57	RS3_BURPS (Q63Q17) 30S ribosomal protein S3	28	7.8
58	RS3_BURP1 (Q3JMR9) 30S ribosomal protein S3	28	7.8
59	RS3_BURMA (Q62GL1) 30S ribosomal protein S3	28	7.8
60	RECQ4_MOUSE (Q75NR7) ATP-dependent DNA helicase Q4 (EC 3.6.1.-) ...	28	7.8
61	SNUT3_MOUSE (Q8K194) U4/U6.U5 tri-snRNP-associated protein 3	28	7.8
62	FZD8_HUMAN (Q9H461) Frizzled 8 precursor (Frizzled-8) (Fz-8) (hFz8)	28	7.8

>ICP0_EHV1V (P84445) Trans-acting transcriptional protein ICP0 (Infected cell|
           protein 0)
          Length = 532

 Score = 35.8 bits (81), Expect = 0.029
 Identities = 32/86 (37%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
 Frame = +3

Query: 33  SDEPLIRNSKTLVSRS----PHRSRCPAP---RRPGRRDEEPLPATRRPLRIRARPPHAR 191
           SDE    NS     R     P R+R   P   RR GRR   P PA+RR  R+R R P  R
Sbjct: 239 SDETSTDNSSAQAPRQEDSRPARARPGPPTRGRRRGRRPAAPGPASRRSARLRRRQP--R 296

Query: 192 SGSVPGGGRDHH----TGDPDAQARP 257
           + S   GG +      T D D    P
Sbjct: 297 TNSRTNGGDNGEIIDLTLDSDGDTEP 322

to top

>ICP0_EHV1B (P28990) Trans-acting transcriptional protein ICP0|
          Length = 532

 Score = 35.8 bits (81), Expect = 0.029
 Identities = 32/86 (37%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
 Frame = +3

Query: 33  SDEPLIRNSKTLVSRS----PHRSRCPAP---RRPGRRDEEPLPATRRPLRIRARPPHAR 191
           SDE    NS     R     P R+R   P   RR GRR   P PA+RR  R+R R P  R
Sbjct: 239 SDETSTDNSSAQAPRQEDSRPARARPGPPTRGRRRGRRPAAPGPASRRSARLRRRQP--R 296

Query: 192 SGSVPGGGRDHH----TGDPDAQARP 257
           + S   GG +      T D D    P
Sbjct: 297 TNSRTNGGDNGEIIDLTLDSDGDTEP 322

to top

>CAC1B_HUMAN (Q00975) Voltage-dependent N-type calcium channel alpha-1B subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.2)
            (Calcium channel, L type, alpha-1 polypeptide isoform 5)
            (Brain calcium channel III) (BIII)
          Length = 2339

 Score = 35.0 bits (79), Expect = 0.049
 Identities = 28/70 (40%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
 Frame = +3

Query: 87   RSRCPAPR----RPGRRDEEPLPATRRPLRIRARPPHARS----GSVPGGGR-DHHTGDP 239
            + R  AP+     PG R+E P P  R   +  A PP ARS    G  P GGR  H  G P
Sbjct: 866  QDRAEAPKAESGEPGAREERPRPH-RSHSKEAAGPPEARSERGRGPGPEGGRRHHRRGSP 924

Query: 240  D--AQARPRR 263
            +  A+  PRR
Sbjct: 925  EEAAEREPRR 934

to top

>KIF1C_MOUSE (O35071) Kinesin-like protein KIF1C|
          Length = 1100

 Score = 32.3 bits (72), Expect = 0.32
 Identities = 21/56 (37%), Positives = 25/56 (44%)
 Frame = +3

Query: 99   PAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHTGDPDAQARPRRL 266
            PAP+ P      P P  RRP   R RP  +R  S+ GG R    G    Q  P+ L
Sbjct: 999  PAPQPPEEVTVPPAPPNRRPPSPR-RPHRSRRNSLDGGSRSR--GGGSTQPEPQHL 1051

to top

>RSP2_CAEEL (Q23120) Probable splicing factor, arginine/serine-rich 2|
           (RNA-binding protein srp-4) (CeSRp40)
          Length = 281

 Score = 31.6 bits (70), Expect = 0.54
 Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
 Frame = +3

Query: 72  SRSPHRSRCPAPRR--PG-----RRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHT 230
           SRSP RSR P  RR  PG     R+     P  R   R R+    ++S S  GG R    
Sbjct: 200 SRSPTRSRSPPARRRSPGSDRSDRKSRSASPKKRSDKRARS---ESKSRSRSGGRRSRSN 256

Query: 231 GDPDAQARPRR 263
             P+    P++
Sbjct: 257 SPPNRSPSPKK 267

to top

>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 31.6 bits (70), Expect = 0.54
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +3

Query: 42  PLIRNSKTLVSRSP---HRSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGS 200
           P+ ++ +   S SP    R R P+P  P RR   P P  RR  R  + PP  RS S
Sbjct: 553 PVTKSGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRR--RTPSPPPRRRSPS 606

to top

>PKAA_STRCO (P54739) Serine/threonine protein kinase pkaA (EC 2.7.11.1)|
          Length = 543

 Score = 31.6 bits (70), Expect = 0.54
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +3

Query: 75  RSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGS---VPGGG 215
           + P R   P P++P R    P P  ++P R   RPP  RS +   +PG G
Sbjct: 436 QQPQRYATPQPQQPQRYAPPPAPEPQQPRR-EPRPPRQRSANPMRIPGLG 484

to top

>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 31.2 bits (69), Expect = 0.71
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
 Frame = +3

Query: 9   AR*TETVASDEPLIRNSKTLVSRSPHRSRCPAPRRPG-----RRDEEPLPATRRPLRIRA 173
           +R T    S +P  R+S +   R+P  S  P P R G     +R + P P+T RP+R  +
Sbjct: 667 SRSTREARSPQPNKRHSPSPRPRAPQTSSSPPPVRRGASSSPQRRQSPSPST-RPIRRVS 725

Query: 174 RPPHAR 191
           R P  +
Sbjct: 726 RTPEPK 731



 Score = 29.6 bits (65), Expect = 2.1
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = +3

Query: 87  RSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGS 200
           R R P+P  P RR   P P  RR  R  + PP  RS S
Sbjct: 557 RRRSPSPAPPPRRRRTPTPPPRR--RTPSPPPRRRSPS 592



 Score = 28.1 bits (61), Expect = 6.0
 Identities = 22/59 (37%), Positives = 24/59 (40%)
 Frame = +3

Query: 30  ASDEPLIRNSKTLVSRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVP 206
           AS  P  R  +T       RS  P P R  RR   P P  RR  R    PP  R+ S P
Sbjct: 529 ASPSPRKRQKETSPRGRRRRSPSPPPTRR-RRSPSPAPPPRRR-RTPTPPPRRRTPSPP 585

to top

>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4|
           (RNA-binding protein srp-2) (CeSC35)
          Length = 196

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 23/70 (32%), Positives = 27/70 (38%), Gaps = 7/70 (10%)
 Frame = +3

Query: 72  SRSPHRSRCPAPRR-------PGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHT 230
           SRSP  SR  +PRR       P  RD    P  R   R R+R P  R    P   R    
Sbjct: 123 SRSPRYSRSRSPRRSRSRTRSPPSRDRRDSPDRRDNSRSRSRSPPPREDGSPKERRSRSR 182

Query: 231 GDPDAQARPR 260
               + +R R
Sbjct: 183 SASRSPSRSR 192

to top

>IF2_PROAC (Q6A7M5) Translation initiation factor IF-2|
          Length = 964

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
 Frame = +3

Query: 87  RSRCPAPR-RPGRRDEEPLPATR---RPLRIRARPPHARSGSVPGGGRDHHTGDP 239
           +   PAP+ +PG   + P P  R   RP      P  AR G  PG GR   TG P
Sbjct: 158 KPHAPAPKPKPGAPSKSPKPGARPGPRPGGSAGLPSAARPGPRPGAGR--RTGAP 210

to top

>RSP7_CAEEL (O01159) Probable splicing factor, arginine/serine-rich 7 (p54)|
          Length = 452

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 19/41 (46%), Positives = 22/41 (53%)
 Frame = +3

Query: 72  SRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARS 194
           SRSP R R P+PRR  RRD       R   R R+R   +RS
Sbjct: 275 SRSPRRRRSPSPRR--RRDSRDRDRDRDRDRRRSRDRRSRS 313

to top

>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)|
           (PABP)
          Length = 653

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 20/62 (32%), Positives = 23/62 (37%)
 Frame = +3

Query: 99  PAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHTGDPDAQARPRRLFLGV 278
           PAP  PG     P+PA  RP+ +         GSVP  G       P     P R     
Sbjct: 525 PAPGYPGMNARGPVPAQGRPMMM--------PGSVPSAGPAEAEAVPAVPGMPERFTAAD 576

Query: 279 LA 284
           LA
Sbjct: 577 LA 578

to top

>NPAS3_MOUSE (Q9QZQ0) Neuronal PAS domain protein 3 (Neuronal PAS3) (Member of|
           PAS protein 6) (MOP6)
          Length = 925

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = +3

Query: 105 PRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHTGDPDAQARP 257
           P R   R+E P   T+ P       P  + GS+ GGG   H   PD+   P
Sbjct: 673 PNREISRNESPYSMTKPPTSEHFPSPQGQGGSIGGGGA-LHVAIPDSVLTP 722

to top

>XYLT1_PANTR (Q5QQ57) Xylosyltransferase 1 (EC 2.4.2.26) (Xylosyltransferase I)|
           (Peptide O-xylosyltransferase 1)
          Length = 945

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 129 EEPLPATRRPLR-IRARPPHARSGSVPGGGRDHHTGDPDAQAR 254
           E+P PA RR  R + A P  AR G   GGG       P A+AR
Sbjct: 55  EQPPPAPRRERRDLPAEPAAARGGGGGGGGCGGGGRGPQARAR 97

to top

>VE2_HPV1A (P03118) Regulatory protein E2|
          Length = 401

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 28/76 (36%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
 Frame = +3

Query: 51  RNSKTLVSRSPH-RSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGG---GR 218
           R  KT V R P+ R R  +PR  GRR+ E  P +R P            GSVP     G 
Sbjct: 249 RQQKTPVRRRPYGRRRSRSPRGGGRREGESTP-SRTP------------GSVPSARDVGS 295

Query: 219 DHHTGDPDAQARPRRL 266
            H T      +R RRL
Sbjct: 296 IHTTPQKGHSSRLRRL 311

to top

>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)|
          Length = 303

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +3

Query: 51  RNSKTLVSRSP---HRSRCPAPRRPGRRDEEPLPATRR 155
           R+     SRSP    +SR P+PRR   R   PLP+ ++
Sbjct: 243 RSPAKSTSRSPGPRSKSRSPSPRRSRSRSRSPLPSVQK 280

to top

>FOG1_MOUSE (O35615) Zinc finger protein ZFPM1 (Zinc finger protein multitype|
           1) (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1)
          Length = 995

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
 Frame = +3

Query: 51  RNSKTLVSRSPHRSRCPAPRRPGRR--DEEPLPATRRPLRIRARPPHARSGSVPGGG 215
           R  K   +  P  +R   P  PG +     P P +  P+R++        GS PG G
Sbjct: 466 RTIKVEAAEEPEATRASGPGEPGPQAPSRTPSPHSPNPVRVKTELSSPTPGSSPGPG 522

to top

>MMP16_RAT (O35548) Matrix metalloproteinase-16 precursor (EC 3.4.24.-)|
           (MMP-16) (Membrane-type matrix metalloproteinase 3)
           (MT-MMP 3) (MTMMP3) (Membrane-type-3 matrix
           metalloproteinase) (MT3-MMP) (MT3MMP)
          Length = 607

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 57  SKTLVSRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARP 179
           ++ L +  PHRS  PA  R   R + P P T RP    A+P
Sbjct: 300 TRPLPTVPPHRSVPPADPRKNDRPKPPRPPTGRPSYPGAKP 340

to top

>MMP16_HUMAN (P51512) Matrix metalloproteinase-16 precursor (EC 3.4.24.-)|
           (MMP-16) (Membrane-type matrix metalloproteinase 3)
           (MT-MMP 3) (MTMMP3) (Membrane-type-3 matrix
           metalloproteinase) (MT3-MMP) (MT3MMP) (MMP-X2)
          Length = 607

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 57  SKTLVSRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARP 179
           ++ L +  PHRS  PA  R   R + P P T RP    A+P
Sbjct: 300 TRPLPTVPPHRSIPPADPRKNDRPKPPRPPTGRPSYPGAKP 340

to top

>FA47A_HUMAN (Q5JRC9) Protein FAM47A|
          Length = 778

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 21/57 (36%), Positives = 27/57 (47%)
 Frame = +3

Query: 39  EPLIRNSKTLVSRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPG 209
           EP ++  +T VS  PH    P  RR      +P P TRR   +R+ PP  R  S  G
Sbjct: 465 EPCLQPPETQVSH-PHPEH-PKTRRRSSLHSQP-PKTRRTSSLRSEPPKTRRTSSLG 518

to top

>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 18/48 (37%), Positives = 19/48 (39%)
 Frame = +3

Query: 75  RSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGR 218
           R   RSR  +PRR       P P  R P R    PP  R    PG  R
Sbjct: 299 RHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPGRRR 346

to top

>VGLE_CHV1 (P30816) Glycoprotein E homolog (Fragment)|
          Length = 64

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 18/46 (39%), Positives = 19/46 (41%)
 Frame = +3

Query: 117 GRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHTGDPDAQAR 254
           G RDE    + R   R R RPP    GS    GR    G   A AR
Sbjct: 11  GDRDESEYDSDRIASRARIRPPSEAPGSRSSPGRRRTRGHRGAAAR 56

to top

>IF2_NITWN (Q3SWP9) Translation initiation factor IF-2|
          Length = 871

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
 Frame = +3

Query: 87  RSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHTGD-----PDAQA 251
           ++   A RR G+ + +P PA       RA PP AR  +V   G D          P   A
Sbjct: 167 KAEIEAKRRFGQTESKPAPAKTTTTTTRAAPP-ARPAAVAADGSDEDEAPRLVRRPGGPA 225

Query: 252 RP 257
           RP
Sbjct: 226 RP 227

to top

>SREC2_HUMAN (Q96GP6) Scavenger receptor class F member 2 precursor (Scavenger|
           receptor expressed by endothelial cells 2 protein)
           (SREC-II) (SRECRP-1)
          Length = 866

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +3

Query: 42  PLIRNSKTLVSRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRAR 176
           P  +++ T+   SP R+R P PR PG  +E    A   P R RAR
Sbjct: 701 PSDKSAHTVEHGSP-RTRDPTPRPPGLPEEATALAAPSPPRARAR 744

to top

>RPOA_PRRSB (Q8B912) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:|
           Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha
           papain-like cysteine proteinase (EC 3.4.22.-)
           (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase
           (EC 3.4.22.-) (PCP
          Length = 3963

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 126 DEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHTGDP 239
           +++P+PA RR +R     P     +VP G  D   G P
Sbjct: 832 EDKPVPAPRRKVRSGCGSPVLMGDNVPNGSEDLTVGGP 869

to top

>CABP4_BOVIN (Q8HZJ4) Calcium-binding protein 4 (CaBP4)|
          Length = 279

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -3

Query: 260 PGPSLRVRVPGVVVSAASG--DGTRASMRRTSADTKGAAGSRKG 135
           P P+ R + P V V A+S   +G     +R+S   KG  GSRKG
Sbjct: 12  PDPAPRPQKPPVEVLASSSGAEGPPLMRKRSSKREKGLRGSRKG 55

to top

>YA4E_SCHPO (Q09731) Hypothetical WD-repeat protein C31A2.14 in chromosome I|
          Length = 962

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 69  VSRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARP 179
           V RS  + +  A R   R+    +P+   PLRIR+RP
Sbjct: 540 VVRSEAKKQIEAQREEARKGNVNMPSALSPLRIRSRP 576

to top

>PDLI7_HUMAN (Q9NR12) PDZ and LIM domain protein 7 (LIM mineralization protein)|
           (LMP) (Protein enigma)
          Length = 457

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 141 PATRRPLRIRARPPHARSGSVPGGGRDH 224
           PAT  PL+ R     A +G VPGGG ++
Sbjct: 249 PATPTPLQSRTSIVQAAAGGVPGGGSNN 276

to top

>INO80_ASPFU (Q4WTV7) Putative DNA helicase ino80 (EC 3.6.1.-)|
          Length = 1708

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = +3

Query: 69  VSRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARPP 182
           +SRSPH S  P+          PLPAT  PL   A PP
Sbjct: 54  LSRSPHYSHAPS----------PLPATLPPLNGGAPPP 81

to top

>PDE3A_HUMAN (Q14432) cGMP-inhibited 3',5'-cyclic phosphodiesterase A (EC|
           3.1.4.17) (Cyclic GMP-inhibited phosphodiesterase A)
           (CGI-PDE A)
          Length = 1141

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 162 RIRARPPHARSGSVPGGGRD-HHTGDPDAQARPR 260
           R+R +P H+     P  GRD HH  DP   A PR
Sbjct: 9   RVRDKPVHSGVSQAPTAGRDCHHRADP---ASPR 39

to top

>SNUT3_HUMAN (Q8WVK2) U4/U6.U5 tri-snRNP-associated protein 3 (U4/U6.U5|
           tri-snRNP-associated 27 kDa protein) (27K) (Nucleic
           acid-binding protein RY-1)
          Length = 155

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
 Frame = +3

Query: 72  SRSPHR----SRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHTGDP 239
           SRSP R    SR  +  R  RR E      R   R R+R PH R    P   R H +  P
Sbjct: 6   SRSPRRERRRSRSTSRERERRRRERSRSRERDRRRSRSRSPHRRRSRSP---RRHRSTSP 62

to top

>HMDH_GIBFU (Q12577) 3-hydroxy-3-methylglutaryl-coenzyme A reductase (EC|
           1.1.1.34) (HMG-CoA reductase)
          Length = 976

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -3

Query: 281 ENTEEEPPGPSLRVRVPGVVVSAASGDGTRASMRRTS--ADTKGAA 150
           E T+EE    S+R ++PG  +    GD TRA   R S  A  K AA
Sbjct: 515 EMTDEEVISLSMRGKIPGYALEKTLGDFTRAVKIRRSIIARNKAAA 560

to top

>WASIP_HUMAN (O43516) Wiskott-Aldrich syndrome protein-interacting protein|
           (WASP-interacting protein) (PRPL-2 protein)
          Length = 503

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +3

Query: 78  SPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPG 209
           S HR   P P  P + ++ P+P+T RP      PP     S PG
Sbjct: 276 SIHREAVPPP--PPQNNKPPVPSTPRPSASSQAPPPPPPPSRPG 317



 Score = 27.7 bits (60), Expect = 7.8
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = +3

Query: 81  PHRSRCPAPRRP--GRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHTG 233
           P R+R P PR     + D  P P    P  I++   +  S  VPGG R    G
Sbjct: 164 PQRNRMPPPRPDVGSKPDSIPPPVPSTPRPIQSSLHNRGSPPVPGGPRQPSPG 216

to top

>CBLB_XENTR (Q6DFR2) E3 ubiquitin-protein ligase CBL-B (EC 6.3.2.-) (Signal|
           transduction protein CBL-B) (SH3-binding protein CBL-B)
          Length = 982

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
 Frame = +3

Query: 69  VSRSPHRSRCPAPRRPG---RRDEEPLPATRRPLRIRARPPHARSGSVPGGGRD----HH 227
           ++RSP  S   +P+      R+ ++PLPA   PLR    PP  R   +P   R     HH
Sbjct: 528 LARSPCASPTGSPKSSPCMVRKQDKPLPAPPPPLR-EPPPPPERPPPIPPDSRTCRHLHH 586

Query: 228 T 230
           T
Sbjct: 587 T 587

to top

>CBLB_HUMAN (Q13191) E3 ubiquitin-protein ligase CBL-B (EC 6.3.2.-) (Signal|
           transduction protein CBL-B) (SH3-binding protein CBL-B)
           (Casitas B-lineage lymphoma proto-oncogene b) (RING
           finger protein 56)
          Length = 982

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = +3

Query: 69  VSRSPHRSRCPAPRRPG---RRDEEPLPATRRPLRIRARPPHARSGSVPGGGR 218
           + RSP  S   +P+      R+ ++PLPA   PLR    PP  R   +P   R
Sbjct: 518 IVRSPCGSPTGSPKSSPCMVRKQDKPLPAPPPPLRDPPPPPPERPPPIPPDNR 570

to top

>KIF1C_HUMAN (O43896) Kinesin-like protein KIF1C|
          Length = 1103

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +3

Query: 99   PAPRRPGRRDEEPLPAT--RRPLRIRARPPHARSGSVPGGGRDHHTGDPDAQARPR 260
            P P +P   +  P PAT  RRP   R R  H R  S+ GGGR    G   AQ  P+
Sbjct: 1000 PTPLQPPE-EVTPHPATPARRPPSPR-RSHHPRRNSLDGGGRSRGAG--SAQPEPQ 1051

to top

>CD2A2_HUMAN (Q8N726) Cyclin-dependent kinase inhibitor 2A, isoform 4 (p14ARF)|
           (p19ARF)
          Length = 173

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
 Frame = +3

Query: 66  LVSRSPHRSRCPAPRRPGRRDEE-----PLPATRRPLRIRARPPHA---RSGSVPGGGRD 221
           ++ RS    + P PRRPG  D +        A RR  ++R RP H+   R+   PGG   
Sbjct: 89  MLLRSQRLGQQPLPRRPGHDDGQRPSGGAAAAPRRGAQLR-RPRHSHPTRARRCPGGLPG 147

Query: 222 HHTG 233
           H  G
Sbjct: 148 HAGG 151

to top

>CWC21_USTMA (Q4P0G6) Pre-mRNA-splicing factor CWC21|
          Length = 348

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 48  IRNSKTLVSRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARPP 182
           + +S++  SRSP RSR P+ R    R   P    RR    R  PP
Sbjct: 295 LSHSRSSRSRSPSRSRSPS-RCASSRSRSPAHRPRRHSSSRVNPP 338

to top

>XYLT1_HUMAN (Q86Y38) Xylosyltransferase 1 (EC 2.4.2.26) (Xylosyltransferase I)|
           (XylT-I) (XT-I) (Peptide O-xylosyltransferase 1)
          Length = 959

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +3

Query: 117 GRRDEEPLPATRRPLR-IRARPPHARSGSVPGGGRDHHTGDPDAQAR 254
           G     P PA RR  R + A P  AR G   GGG     G P A+AR
Sbjct: 53  GGEQPPPAPAPRRERRDLPAEPAAARGGGGGGGGGGGGRG-PQARAR 98

to top

>CWC22_MAGGR (Q52B63) Pre-mRNA-splicing factor CWC22|
          Length = 907

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 20/52 (38%), Positives = 30/52 (57%)
 Frame = +3

Query: 54  NSKTLVSRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPG 209
           ++++ +SRSP  SR P+PRR  RRD      +R P+R R     A + + PG
Sbjct: 815 DNRSPLSRSPSGSRSPSPRR--RRDS----PSRSPVRDRESGGRA-AAAAPG 859

to top

>CSKP_MOUSE (O70589) Peripheral plasma membrane protein CASK (EC 2.7.11.1)|
           (Calcium/calmodulin-dependent serine protein kinase)
          Length = 924

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = +3

Query: 63  TLVSRSPHRSRCPAPR--RPGRRDEE 134
           TL+++ P R  CP P   RP ++DEE
Sbjct: 757 TLITKHPDRFACPIPHTTRPPKKDEE 782

to top

>UL61_HCMVA (P16818) Hypothetical protein UL61|
          Length = 431

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = -3

Query: 263 PPGPSLRVRVPGVVVSAASGDGTRASMRRTSADTKGAAGSRKG 135
           P G   R R PG V SAA G G+R      + D     G  +G
Sbjct: 227 PRGGRGRARTPGPVHSAAGGPGSRRRSPGAARDPGPEPGEERG 269

to top

>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 22/55 (40%), Positives = 23/55 (41%), Gaps = 12/55 (21%)
 Frame = +3

Query: 72  SRSPHRSRCPAPRRPGRRD-----------EEPLPATRRPLRIRARPP-HARSGS 200
           SRS  RSR P+  RP RR              P P  R P R    PP H RS S
Sbjct: 285 SRSRSRSRSPSHSRPRRRHRSRSRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRS 339

to top

>SPEG_HUMAN (Q15772) Striated muscle preferentially expressed protein kinase|
           (EC 2.7.11.1) (Aortic preferentially expressed protein
           1) (APEG-1)
          Length = 3223

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
 Frame = +3

Query: 33  SDEPLIRNSKTLVSRSPHRSRCPAPRRPGRRDEEPLPATRRPLR----IRARPPHARSGS 200
           S E L+R+ ++L +      R P+PR PG       P+T +  R      A+PP   S  
Sbjct: 506 SREELVRSHESLRATL---QRAPSPREPGEPPLFSRPSTPKTSRAVSPAAAQPPSPSSAE 562

Query: 201 VPGG--GRDHHTGDPDAQARP 257
            PG   GR    G P  +  P
Sbjct: 563 KPGDEPGRPRSRG-PAGRTEP 582

to top

>PTN23_HUMAN (Q9H3S7) Tyrosine-protein phosphatase non-receptor type 23 (EC|
           3.1.3.48) (His-domain-containing protein tyrosine
           phosphatase) (HD-PTP) (Protein tyrosine phosphatase
           TD14) (PTP-TD14)
          Length = 1636

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 60  KTLVSRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSG 197
           + L  + P R   P P  P R + E + A   P  +R+ PP   +G
Sbjct: 710 RELKKKPPPRPTAPKPLLPRREESEAVEAGDPPEELRSLPPDMVAG 755

to top

>OST6_MOUSE (Q5GFD5) Heparan sulfate glucosamine 3-O-sulfotransferase 6 (EC|
           2.8.2.23) (Heparan sulfate D-glucosaminyl
           3-O-sulfotransferase 6) (Heparan sulfate
           3-O-sulfotransferase 6) (3-OST-6)
          Length = 342

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = -3

Query: 266 EPPGPSLRVRVPGVVVSAASGDGTR 192
           EPP  SLR+R PG+ V  ASG G R
Sbjct: 66  EPPHTSLRLRAPGLPV--ASGPGRR 88

to top

>PG20_MYCTU (O53416) Hypothetical PE-PGRS family protein PE_PGRS20|
          Length = 463

 Score = 23.9 bits (50), Expect(2) = 6.0
 Identities = 13/41 (31%), Positives = 15/41 (36%)
 Frame = -3

Query: 257 GPSLRVRVPGVVVSAASGDGTRASMRRTSADTKGAAGSRKG 135
           GP+  +  PGV   A    GT        A   G AG   G
Sbjct: 198 GPAGAIGAPGVAGGAGGAGGTAGLFGNGGAGGAGGAGGAGG 238



 Score = 22.7 bits (47), Expect(2) = 6.0
 Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
 Frame = -2

Query: 126 LAGRGAAAPDSGCGGETGRRG-----FWNSGSG 43
           L+G G  A   G GG  G  G      W SG+G
Sbjct: 249 LSGNGGDAGTGGGGGNAGNGGNGGSAGWLSGNG 281

to top

>MYSC_ACACA (P10569) Myosin IC heavy chain|
          Length = 1168

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 18/47 (38%), Positives = 18/47 (38%)
 Frame = +3

Query: 99   PAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHTGDP 239
            PAP  PGR    P      P   RA PP  R    PGG      G P
Sbjct: 1074 PAPGGPGRGGAPP------PGAGRAGPPGGRGMPAPGGAAPRGRGAP 1114

to top

>GPR_BACME (P22321) Germination protease precursor (EC 3.4.24.78) (Spore|
           protease) (GPR endopeptidase) (Germination proteinase)
          Length = 371

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -3

Query: 269 EEPPGPSLRVRVPGVVVSAASGDGTRASMRRTSADTKGAAGSRKGLLIS 123
           E  P P+ +  + GV+V      G + SM   + +   A G +KG  ++
Sbjct: 26  ENQPKPNNQSEIKGVIVKEKEEQGVKISMVEITEEGAEAIGKKKGRYVT 74

to top

>CWC22_USTMA (Q4PCY0) Pre-mRNA-splicing factor CWC22|
          Length = 886

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 54  NSKTLVSRSPHRSRCPAPRRPGRR 125
           +S++  SRSP RSR P PR   RR
Sbjct: 42  SSRSTSSRSPSRSRSPPPRSRRRR 65

to top

>CBLBB_XENLA (Q6NRE7) E3 ubiquitin-protein ligase CBL-B-B (EC 6.3.2.-) (Signal|
           transduction protein CBL-B-B) (SH3-binding protein
           CBL-B-B)
          Length = 764

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
 Frame = +3

Query: 66  LVSRSPHRSRCPAPRRP-------GRRDEEPLPATRRPLRIRARPPHARSGSVPGGGR 218
           L+ R   RS C +P           R+ ++PLPA   PLR    PP  R   +P   R
Sbjct: 525 LIQRGLARSPCASPTGSPKSSPCMARKQDKPLPAPPPPLR-EPPPPPERPPPIPPDSR 581

to top

>MMP16_MOUSE (Q9WTR0) Matrix metalloproteinase-16 precursor (EC 3.4.24.-)|
           (MMP-16) (Membrane-type matrix metalloproteinase 3)
           (MT-MMP 3) (MTMMP3) (Membrane-type-3 matrix
           metalloproteinase) (MT3-MMP) (MT3MMP)
          Length = 607

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 57  SKTLVSRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARP 179
           ++ L +  PHRS  PA  R   R + P P T RP    A+P
Sbjct: 300 TRPLPTVPPHRSVPPADPRRHDRPKPPRPPTGRPSYPGAKP 340

to top

>CXCC1_MOUSE (Q9CWW7) CpG-binding protein (PHD finger and CXXC domain-containing|
           protein 1) (CXXC finger protein 1)
          Length = 660

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +3

Query: 123 RDEEP-LPATRRPLRIRARPPHARSGSVP---GGGRDHHTGDPDAQAR 254
           R+++P L    R  + R R    R+GS P   GGGR     DP+ Q R
Sbjct: 74  REKDPKLEIRYRHKKCRERDGSERAGSEPRDEGGGRKRPASDPELQRR 121

to top

>CAC1A_RAT (P54282) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide, isoform 4)
            (Brain calcium channel I) (BI) (RAT brain class A)
            (RBA-I)
          Length = 2212

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 32/110 (29%), Positives = 39/110 (35%), Gaps = 34/110 (30%)
 Frame = +3

Query: 36   DEPLI------RNSKTLVSRSPHRSRCPA-------------------PRRPGR-----R 125
            D PL+      RN+ T  SR+P   R  A                    R PGR     R
Sbjct: 821  DRPLVVDPQENRNNNTNKSRAPEALRQTARPRESARDPDARRAWPSSPERAPGREGPYGR 880

Query: 126  DEEPLPATRRPLRIR----ARPPHARSGSVPGGGRDHHTGDPDAQARPRR 263
            + EP      P R      A P  A++G  P      HT  P A+  PRR
Sbjct: 881  ESEPQQREHAPPREHVPWDADPERAKAGDAP----RRHTHRPVAEGEPRR 926

to top

>VASHL_MOUSE (Q8C5G2) Vasohibin-like protein|
          Length = 355

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 72  SRSPHRSRCPAPRRPGRRDEEP 137
           S SP R +   PRR GRRD+ P
Sbjct: 312 SLSPRRRQASPPRRLGRRDKSP 333

to top

>RS3_BURS3 (Q39KG1) 30S ribosomal protein S3|
          Length = 266

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +3

Query: 33  SDEPLIRNSKTLVSRSPHRSRCPAPRRPGRRDEEPLPATRR--PLRIRARPPHARSG 197
           +D P++   +    + P R+  P  RRP R  E   P  RR  P R   +P   ++G
Sbjct: 211 NDAPVVE--EVAEDKRPRRNARPGDRRPRRDGEGGAPGARRGAPRRGAGKPEDGKTG 265

to top

>RS3_BURPS (Q63Q17) 30S ribosomal protein S3|
          Length = 266

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +3

Query: 33  SDEPLIRNSKTLVSRSPHRSRCPAPRRPGRRDEEPLPATRR--PLRIRARPPHARSG 197
           +D P++   +    + P R+  P  RRP R  E   P  RR  P R   +P   ++G
Sbjct: 211 NDAPVVE--EVTEDKRPRRNARPGDRRPRRDGEGGAPGARRGGPRRGAGKPEDGKTG 265

to top

>RS3_BURP1 (Q3JMR9) 30S ribosomal protein S3|
          Length = 266

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +3

Query: 33  SDEPLIRNSKTLVSRSPHRSRCPAPRRPGRRDEEPLPATRR--PLRIRARPPHARSG 197
           +D P++   +    + P R+  P  RRP R  E   P  RR  P R   +P   ++G
Sbjct: 211 NDAPVVE--EVTEDKRPRRNARPGDRRPRRDGEGGAPGARRGGPRRGAGKPEDGKTG 265

to top

>RS3_BURMA (Q62GL1) 30S ribosomal protein S3|
          Length = 266

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +3

Query: 33  SDEPLIRNSKTLVSRSPHRSRCPAPRRPGRRDEEPLPATRR--PLRIRARPPHARSG 197
           +D P++   +    + P R+  P  RRP R  E   P  RR  P R   +P   ++G
Sbjct: 211 NDAPVVE--EVTEDKRPRRNARPGDRRPRRDGEGGAPGARRGGPRRGAGKPEDGKTG 265

to top

>RECQ4_MOUSE (Q75NR7) ATP-dependent DNA helicase Q4 (EC 3.6.1.-) (RecQ|
           protein-like 4)
          Length = 1216

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 16/49 (32%), Positives = 20/49 (40%)
 Frame = +3

Query: 57  SKTLVSRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSV 203
           S+ L  +    S  PAPR PG + E P P        R   P  R G +
Sbjct: 125 SRKLQLQKRSLSTVPAPRPPGSKTESPCPDEADDALPRVPEPRPRLGQL 173

to top

>SNUT3_MOUSE (Q8K194) U4/U6.U5 tri-snRNP-associated protein 3|
          Length = 155

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
 Frame = +3

Query: 72  SRSPHR----SRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHTGDP 239
           SRSP R    SR  +  R  RR E      R   R R+R PH R    P   R H +  P
Sbjct: 6   SRSPRRERRRSRSTSRDRERRRRERSRSRERDRRRSRSRSPHRRRSRSP---RRHRSTSP 62

to top

>FZD8_HUMAN (Q9H461) Frizzled 8 precursor (Frizzled-8) (Fz-8) (hFz8)|
          Length = 694

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 25/71 (35%), Positives = 28/71 (39%)
 Frame = +3

Query: 51  RNSKTLVSRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHT 230
           R   T  + SP R   P P  PG   E+P   +       ARPPH   G   GGG     
Sbjct: 153 RTDLTTAAPSPPRRLPPPP--PG---EQPPSGSGHGRPPGARPPHRGGGRGGGGG----- 202

Query: 231 GDPDAQARPRR 263
              DA A P R
Sbjct: 203 ---DAAAPPAR 210


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,477,567
Number of Sequences: 219361
Number of extensions: 603672
Number of successful extensions: 3844
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 3387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3821
length of database: 80,573,946
effective HSP length: 72
effective length of database: 64,779,954
effective search space used: 1554718896
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result