>KSGA_ARCFU (O28491) Probable dimethyladenosine transferase (EC 2.1.1.-)|
           (S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase) (16S rRNA dimethylase)
          Length = 244

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 18/43 (41%), Positives = 26/43 (60%)
 Frame = +1

Query: 262 PFRLSSRLTFQHLASEFLGLQIKLAVEIRSEPVAERLCPERKR 390
           P+++SS LTF+ L ++F     +LAV +     AERLC E  R
Sbjct: 102 PYKISSPLTFKLLKTDF-----RLAVVMYQREFAERLCGEDNR 139

>ITA2B_HUMAN (P08514) Integrin alpha-IIb precursor (Platelet membrane|
           glycoprotein IIb) (GPalpha IIb) (GPIIb) (CD41 antigen)
           [Contains: Integrin alpha-IIb heavy chain; Integrin
           alpha-IIb light chain]
          Length = 1039

 Score = 31.6 bits (70), Expect = 0.99
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -3

Query: 253 DEQGKHFPLCYTTVASTRVEATYRIK 176
           D  GKH P+C+TT+A  R EA +R K
Sbjct: 567 DLGGKHSPICHTTMAFLRDEADFRDK 592

>FLID_TREMA (Q9KWW7) Flagellar hook-associated protein 2 (HAP2) (Filament cap|
           protein) (Flagellar cap protein)
          Length = 673

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = -3

Query: 436 LIQYQNKGRFLFTYSVAFSLDKVALLLAQIGSLQLA*SATQGTQKLSAGKLTLMRDEKGK 257
           L  Y + G  +    +AF++DK      QIG +  + ++T  T+  S+ K     + K K
Sbjct: 576 LFGYDSDGDLVIDSGIAFAIDKNLQSFTQIGGIIASKTSTLNTRISSSQKNIETLESKLK 635

Query: 256 RDEQ 245
           R EQ
Sbjct: 636 RKEQ 639

>ITA2B_PAPCY (P53711) Integrin alpha-IIb (Platelet membrane glycoprotein IIb)|
           (GPalpha IIb) (GPIIb) (CD41 antigen) [Contains: Integrin
           alpha-IIb heavy chain; Integrin alpha-IIb light chain]
           (Fragment)
          Length = 604

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -3

Query: 253 DEQGKHFPLCYTTVASTRVEATYRIK 176
           D  GKH P+C+TT+A  R EA  R K
Sbjct: 132 DLGGKHSPICHTTMAFLRDEADIRDK 157


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,085,911
Number of Sequences: 219361
Number of extensions: 770223
Number of successful extensions: 2328
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2327
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)