ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl43f05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ249273.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC 631P8, complete sequence Length = 101158 Score = 337 bits (170), Expect = 2e-89 Identities = 229/248 (92%), Gaps = 13/248 (5%) Strand = Plus / Minus Query: 222 tagcagagtggg-aaatgcttcccctgctcgtctcgcttccccttttc-------gtctc 273 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct: 94312 tagcagagtggggaaatgcttcccctgctcgtctcgcttccccttttcacgacccgtctc 94253 Query: 274 tcatcaaggttaactttccagcacttagcttctgagttccttgggttgcagattaagcta 333 | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 94252 tgatcaaggttaactttccagcacttagcttctcagttccttgggttgcagattaagcta 94193 Query: 334 gctgtagagatccgatctgagccagtagcagagcgactttgtccagagagaaagcgacag 393 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 94192 gctgtagagatccgatctgagccagtagcagtgcgactttgtccagagagaaagcgacag 94133 Query: 394 aataggta-----aataggaatcggcccttattttgatactggataagaggagaattctg 448 |||||||| |||||||||||| ||||||||||||||| |||||| ||||||||||| Sbjct: 94132 aataggtaagtgtaataggaatcggtccttattttgatactagataagcggagaattctg 94073 Query: 449 tgcctaaa 456 |||||||| Sbjct: 94072 tgcctaaa 94065 Score = 111 bits (56), Expect = 2e-21 Identities = 78/86 (90%), Gaps = 7/86 (8%) Strand = Plus / Minus Query: 125 gataatctctctgccttctgaactgtgctctg-------cttgcttcgtgcgaatggctt 177 |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 94438 gataatctctctgccttctgaactgtgctctgttctttgcttgcttcgtgcgaatggctt 94379 Query: 178 tgattctgtatgtagcttcaacacga 203 |||||||||||||||||||| ||||| Sbjct: 94378 tgattctgtatgtagcttcatcacga 94353 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 80 ccaaagcgtcgcccagcttccgtcggccggaggg 113 ||||||||||||| |||||||||||||||||||| Sbjct: 94522 ccaaagcgtcgcctagcttccgtcggccggaggg 94489
>gb|AC159461.1| Mus musculus BAC clone RP23-273I10 from chromosome 13, complete sequence Length = 152402 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 tctctctgccttctgaactgt 150 ||||||||||||||||||||| Sbjct: 17204 tctctctgccttctgaactgt 17224
>gb|AC154539.3| Mus musculus BAC clone RP23-452F20 from chromosome 13, complete sequence Length = 176106 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 tctctctgccttctgaactgt 150 ||||||||||||||||||||| Sbjct: 1504 tctctctgccttctgaactgt 1524
>gb|AC161449.4| Mus musculus BAC clone RP24-124N18 from chromosome 13, complete sequence Length = 150173 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 tctctctgccttctgaactgt 150 ||||||||||||||||||||| Sbjct: 109277 tctctctgccttctgaactgt 109297
>gb|AC018647.5| Homo sapiens chromosome 7 clone RP11-379H18, complete sequence Length = 160732 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 tggctttgattctgtatgta 191 |||||||||||||||||||| Sbjct: 96870 tggctttgattctgtatgta 96889
>emb|AL928960.25| Mouse DNA sequence from clone RP23-413K16 on chromosome 2, complete sequence Length = 195733 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 ggctttgattctgtatgtag 192 |||||||||||||||||||| Sbjct: 173215 ggctttgattctgtatgtag 173234
>emb|BX569787.4| Zebrafish DNA sequence from clone CH211-208H1 in linkage group 6, complete sequence Length = 214158 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 ttctgaactgtgctctgctt 159 |||||||||||||||||||| Sbjct: 148240 ttctgaactgtgctctgctt 148259
>emb|AL138995.5|CNS01DX0 Human chromosome 14 DNA sequence BAC C-2588E21 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 163312 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 368 gactttgtccagagagaaag 387 |||||||||||||||||||| Sbjct: 63208 gactttgtccagagagaaag 63227 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,270,311 Number of Sequences: 3902068 Number of extensions: 3270311 Number of successful extensions: 54211 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54193 Number of HSP's gapped (non-prelim): 17 length of query: 456 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 434 effective length of database: 17,147,199,772 effective search space: 7441884701048 effective search space used: 7441884701048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
