ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl43f03 |
|---|---|
| Clone Library Name | barley_pub |
>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2| Length = 1051 Score = 52.8 bits (125), Expect = 2e-07 Identities = 28/46 (60%), Positives = 28/46 (60%) Frame = +2 Query: 224 MLPRKREIVAGEVEDLQKKXXXXXXXXXXXXXXXXMARRRNEIDED 361 MLPRKREIVAGEVEDLQKK MA R NEIDED Sbjct: 1 MLPRKREIVAGEVEDLQKKTRAGEGEATREEGDAAMAGRGNEIDED 46
>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1| Length = 1051 Score = 52.4 bits (124), Expect = 3e-07 Identities = 28/46 (60%), Positives = 28/46 (60%) Frame = +2 Query: 224 MLPRKREIVAGEVEDLQKKXXXXXXXXXXXXXXXXMARRRNEIDED 361 MLPRKREIVAGEVEDLQKK MA R NEIDED Sbjct: 1 MLPRKREIVAGEVEDLQKKTRAGEGEVTREEGDAAMAGRGNEIDED 46
>CP2DQ_RAT (P10634) Cytochrome P450 2D26 (EC 1.14.14.1) (CYPIID26) (P450-DB2)| (P450-CMF2) (Debrisoquine 4-hydroxylase) Length = 500 Score = 29.3 bits (64), Expect = 2.5 Identities = 16/32 (50%), Positives = 19/32 (59%) Frame = -2 Query: 361 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 266 +LVDLV + PG +PLPG G LLQV Sbjct: 21 LLVDLVHRHKFWTAHYPPGPVPLPGLGNLLQV 52
>CP2DP_PIG (O46658) Cytochrome P450 2D25 (EC 1.14.14.-) (CYPIID25) (Vitamin| D(3) 25-hydroxylase) Length = 499 Score = 29.3 bits (64), Expect = 2.5 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -2 Query: 361 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 266 +LVDL+ + PG +PLPG G LLQV Sbjct: 20 LLVDLMHRRSRWAPRYPPGPMPLPGLGNLLQV 51
>LEU1_STRCO (O31046) 2-isopropylmalate synthase (EC 2.3.3.13)| (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase) Length = 573 Score = 28.5 bits (62), Expect = 4.2 Identities = 13/46 (28%), Positives = 21/46 (45%) Frame = +3 Query: 15 CNPVLQSHPRNPRRTVPRLLPSPTRQANPRFRGGRTRWI*RGSSRR 152 C V+ ++ P R + LP+ ++ P R W+ R SRR Sbjct: 200 CEAVMDTYQPGPGREIILNLPATVERSTPSTHADRFEWMGRNLSRR 245
>CP2DQ_MOUSE (Q8CIM7) Cytochrome P450 2D26 (EC 1.14.14.1) (CYPIID26)| Length = 500 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = -2 Query: 361 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 266 +LVDLV + PG +P PG G LLQV Sbjct: 21 LLVDLVHRRQRWTACYPPGPVPFPGLGNLLQV 52
>CP2DH_MACFA (Q29488) Cytochrome P450 2D17 (EC 1.14.14.1) (CYPIID17)| Length = 497 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = -2 Query: 361 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 266 +LVDL+ + PG LPLPG G LL V Sbjct: 18 LLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>CP2D6_PANTR (Q2XNC8) Cytochrome P450 2D6 (EC 1.14.14.1) (CYPIID6)| Length = 497 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = -2 Query: 361 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 266 +LVDL+ + PG LPLPG G LL V Sbjct: 18 LLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>CP2D6_PANPA (Q2XNC9) Cytochrome P450 2D6 (EC 1.14.14.1) (CYPIID6)| Length = 497 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = -2 Query: 361 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 266 +LVDL+ + PG LPLPG G LL V Sbjct: 18 LLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>CP2D6_HUMAN (P10635) Cytochrome P450 2D6 (EC 1.14.14.1) (CYPIID6) (P450-DB1)| (Debrisoquine 4-hydroxylase) Length = 497 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = -2 Query: 361 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 266 +LVDL+ + PG LPLPG G LL V Sbjct: 18 LLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>PEX6_GLOLA (Q9C1E9) Peroxisomal biogenesis factor 6 (Peroxin-6) (ClaPEX6)| Length = 1388 Score = 28.1 bits (61), Expect = 5.5 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -3 Query: 90 VASGKEAGEGRSV*GFWDGTGGPD 19 V +GK G+G++V GF DGT D Sbjct: 1361 VVNGKGKGKGKAVAGFQDGTASDD 1384
>SURE_HALSA (Q9HQB2) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside| 5'-monophosphate phosphohydrolase) Length = 258 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = +2 Query: 65 SPASFPDATGESKVSRRSHALDLT 136 +P DATGE V+R SHA D+T Sbjct: 172 APHPDADATGEMVVTRPSHAYDMT 195
>CP2DR_MESAU (Q9QYG6) Cytochrome P450 2D27 (EC 1.14.14.-) (CYPIID27)| Length = 500 Score = 27.7 bits (60), Expect = 7.2 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -2 Query: 361 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 266 +LVDL+ + PG +PLPG G LLQV Sbjct: 21 LLVDLMHRRKFWRARYPPGPMPLPGLGNLLQV 52
>CP2DK_MESAU (Q9QYG5) Cytochrome P450 2D20 (EC 1.14.14.-) (CYPIID20)| Length = 500 Score = 27.7 bits (60), Expect = 7.2 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -2 Query: 361 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 266 +LVDL+ + PG +PLPG G LLQV Sbjct: 21 LLVDLMHRRKFWRARYPPGPMPLPGLGNLLQV 52
>CP2DG_CAVPO (Q64403) Cytochrome P450 2D16 (EC 1.14.14.1) (CYPIID16)| Length = 500 Score = 27.7 bits (60), Expect = 7.2 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = -2 Query: 361 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 266 +LVDL+ + PG +P+PG G LLQV Sbjct: 21 LLVDLMHRRQRWAARYPPGPVPVPGLGNLLQV 52
>PKNA_MYCTU (P65726) Probable serine/threonine-protein kinase pknA (EC| 2.7.11.1) Length = 431 Score = 27.7 bits (60), Expect = 7.2 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 9/40 (22%) Frame = +2 Query: 26 PPVPSQKP*TDRPSPASFPDAT---------GESKVSRRS 118 PP PSQ P R +PA+ P T G + SRRS Sbjct: 280 PPRPSQTPPPGRAAPAAIPSGTTARVAANSAGRTAASRRS 319
>PKNA_MYCBO (P65727) Probable serine/threonine-protein kinase pknA (EC| 2.7.11.1) Length = 431 Score = 27.7 bits (60), Expect = 7.2 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 9/40 (22%) Frame = +2 Query: 26 PPVPSQKP*TDRPSPASFPDAT---------GESKVSRRS 118 PP PSQ P R +PA+ P T G + SRRS Sbjct: 280 PPRPSQTPPPGRAAPAAIPSGTTARVAANSAGRTAASRRS 319
>AMPM1_YEAST (Q01662) Methionine aminopeptidase 1 precursor (EC 3.4.11.18)| (MetAP 1) (MAP 1) (Peptidase M 1) Length = 387 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +3 Query: 3 KKRFCNPVLQSHPRNPRRTVPRLLPSPTRQAN 98 K ++ V S+P PRR VP +P P AN Sbjct: 81 KFKYSGKVKASYPLTPRRYVPEDIPKPDWAAN 112
>RS5_RHOS4 (Q3J5Q5) 30S ribosomal protein S5| Length = 187 Score = 27.7 bits (60), Expect = 7.2 Identities = 17/57 (29%), Positives = 24/57 (42%) Frame = -2 Query: 217 RDAAEEPEDGRRRSEEQAVVDGRRELPRQIQRVRPPRNLGFACRVGEGSRRGTVRLG 47 R+ + D R R E D + R + V+ + GFA V G +RG V G Sbjct: 4 RENRRDRRDDRSREETPEFADRLVAINRVSKTVKGGKRFGFAALVVVGDQRGRVGFG 60
>COAT_MCMV (P11642) Coat protein (Capsid protein)| Length = 236 Score = 27.3 bits (59), Expect = 9.4 Identities = 13/49 (26%), Positives = 23/49 (46%) Frame = +2 Query: 2 KKEILQSGPPVPSQKP*TDRPSPASFPDATGESKVSRRSHALDLTRQLP 148 K +++ PPVP P +RP PA + E ++ + D ++P Sbjct: 21 KSRAIRANPPVPRPNPQRNRPPPAGTTCSMSEILLAVSATTADQILEIP 69
>CP2DJ_CALJA (O18992) Cytochrome P450 2D19 (EC 1.14.14.1) (CYPIID19) (P450| CM2D-1) Length = 497 Score = 27.3 bits (59), Expect = 9.4 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = -2 Query: 361 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 266 +LVDL+ + PG +PLPG G LL V Sbjct: 18 LLVDLMHRRQRWAARYPPGPMPLPGLGNLLHV 49 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,552,577 Number of Sequences: 219361 Number of extensions: 659737 Number of successful extensions: 1834 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 1755 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1833 length of database: 80,573,946 effective HSP length: 96 effective length of database: 59,515,290 effective search space used: 1428366960 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)
