Clone Name | bastl43e12 |
---|---|
Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 55.1 bits (131), Expect = 5e-08 Identities = 24/39 (61%), Positives = 31/39 (79%) Frame = +2 Query: 74 VGGIVSDLTGGLRGAHLKGSVVLMRKNALDFNDFGATVM 190 +GG++ LTG + A LKG+VVLMRKN LD NDFGAT++ Sbjct: 3 LGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATII 41
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 54.3 bits (129), Expect = 9e-08 Identities = 27/39 (69%), Positives = 32/39 (82%) Frame = +2 Query: 74 VGGIVSDLTGGLRGAHLKGSVVLMRKNALDFNDFGATVM 190 +GGI+ LTG + A LKGS+VLMRKNALD NDFGATV+ Sbjct: 2 LGGIIGGLTGN-KNARLKGSLVLMRKNALDINDFGATVI 39
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 53.9 bits (128), Expect = 1e-07 Identities = 24/39 (61%), Positives = 31/39 (79%) Frame = +2 Query: 74 VGGIVSDLTGGLRGAHLKGSVVLMRKNALDFNDFGATVM 190 +GGI+ +TG + + LKG+VVLMRKN LD NDFGATV+ Sbjct: 2 LGGIIDTITGSSKQSRLKGTVVLMRKNVLDLNDFGATVI 40
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 37.7 bits (86), Expect = 0.008 Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 5/40 (12%) Frame = +2 Query: 83 IVSDLTGGLRGAH-----LKGSVVLMRKNALDFNDFGATV 187 ++ L GGL G H +KG+VV+M+KNALDF D ++ Sbjct: 1 MLGQLVGGLIGGHHDSKKVKGTVVMMKKNALDFTDLAGSL 40
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 37.0 bits (84), Expect = 0.014 Identities = 18/39 (46%), Positives = 26/39 (66%) Frame = +2 Query: 74 VGGIVSDLTGGLRGAHLKGSVVLMRKNALDFNDFGATVM 190 +GGIV + G +KG V+LM+KN LDF + GA+V+ Sbjct: 3 LGGIVDAILGKDDRPKVKGRVILMKKNVLDFINIGASVV 41
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 37.0 bits (84), Expect = 0.014 Identities = 19/35 (54%), Positives = 24/35 (68%), Gaps = 3/35 (8%) Frame = +2 Query: 95 LTGG---LRGAHLKGSVVLMRKNALDFNDFGATVM 190 LTGG +KG+VVLM+KN LDFNDF A+ + Sbjct: 9 LTGGGNETTTKKVKGTVVLMKKNVLDFNDFNASFL 43
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 36.6 bits (83), Expect = 0.019 Identities = 21/36 (58%), Positives = 24/36 (66%), Gaps = 1/36 (2%) Frame = +2 Query: 65 MFGVGGIVSDLTGGLRGAH-LKGSVVLMRKNALDFN 169 MF V G+ L G G H +KG+VVLMRKN LDFN Sbjct: 1 MFSVPGVSGILNRG--GGHKIKGTVVLMRKNVLDFN 34
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 35.0 bits (79), Expect = 0.054 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 5/40 (12%) Frame = +2 Query: 83 IVSDLTGGLRGAH-----LKGSVVLMRKNALDFNDFGATV 187 ++ +T GL G H +KG+VV+M KN LDF D ++ Sbjct: 1 MIGQITSGLFGGHDDSKKVKGTVVMMNKNVLDFTDLAGSL 40
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 34.7 bits (78), Expect = 0.071 Identities = 15/25 (60%), Positives = 19/25 (76%) Frame = +2 Query: 110 RGAHLKGSVVLMRKNALDFNDFGAT 184 RG +KG+VVLM KN DFN+F +T Sbjct: 7 RGHKIKGTVVLMTKNVFDFNEFVST 31
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 33.1 bits (74), Expect = 0.21 Identities = 18/28 (64%), Positives = 21/28 (75%), Gaps = 1/28 (3%) Frame = +2 Query: 89 SDLTGGL-RGAHLKGSVVLMRKNALDFN 169 S +TG L RG +KG+VVLMRKN LD N Sbjct: 3 SGVTGILNRGHKIKGTVVLMRKNVLDIN 30
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 32.7 bits (73), Expect = 0.27 Identities = 16/27 (59%), Positives = 21/27 (77%), Gaps = 1/27 (3%) Frame = +2 Query: 92 DLTGGLRGAH-LKGSVVLMRKNALDFN 169 ++TG L H ++G+VVLMRKN LDFN Sbjct: 4 NVTGLLNKGHKIRGTVVLMRKNVLDFN 30
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 31.2 bits (69), Expect = 0.79 Identities = 13/20 (65%), Positives = 16/20 (80%) Frame = +2 Query: 110 RGAHLKGSVVLMRKNALDFN 169 RG LKG+V+LM+KN LD N Sbjct: 8 RGQKLKGTVILMQKNVLDIN 27
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 30.8 bits (68), Expect = 1.0 Identities = 13/20 (65%), Positives = 16/20 (80%) Frame = +2 Query: 110 RGAHLKGSVVLMRKNALDFN 169 +G +KG+VVLM KN LDFN Sbjct: 7 KGQKIKGTVVLMPKNVLDFN 26
>UL14_EHV1V (P84404) Hypothetical gene 48 protein| Length = 317 Score = 30.8 bits (68), Expect = 1.0 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Frame = -3 Query: 184 GGAEVVEVERVLAHEDDGAL-EVGAPEAPRQVAHDAADAKHLRSISGECGTLAKLARCGA 8 GG EV + + L HED+ L EAPR AAD RS + ARCGA Sbjct: 132 GGGEVGDPQEWLGHEDEALLMRWMLEEAPRVSTRIAADPHSPRSTCPAPRKAPEDARCGA 191
>UL14_EHV1B (P28949) Hypothetical gene 48 protein| Length = 317 Score = 30.8 bits (68), Expect = 1.0 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Frame = -3 Query: 184 GGAEVVEVERVLAHEDDGAL-EVGAPEAPRQVAHDAADAKHLRSISGECGTLAKLARCGA 8 GG EV + + L HED+ L EAPR AAD RS + ARCGA Sbjct: 132 GGGEVGDPQEWLGHEDEALLMRWMLEEAPRVSTRIAADPHSPRSTCPAPRKAPEDARCGA 191
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 30.4 bits (67), Expect = 1.3 Identities = 16/27 (59%), Positives = 19/27 (70%), Gaps = 2/27 (7%) Frame = +2 Query: 95 LTGGL--RGAHLKGSVVLMRKNALDFN 169 + GGL RG +KG+VVLMRKN L N Sbjct: 1 MLGGLLHRGHKIKGTVVLMRKNVLHVN 27
>IWS1_XENTR (Q505H7) IWS1-like protein| Length = 909 Score = 29.6 bits (65), Expect = 2.3 Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 6/53 (11%) Frame = -3 Query: 187 DGGAEVVEVERVLAHEDDG-----ALEVGAPEAPRQVAH-DAADAKHLRSISG 47 DGGA V+ ER A +D+G E G+PE + H D D KH RS SG Sbjct: 15 DGGATPVQDERDSASDDEGNEREQRSEPGSPERQSEDEHSDIEDNKH-RSDSG 66
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 29.3 bits (64), Expect = 3.0 Identities = 16/39 (41%), Positives = 23/39 (58%) Frame = +2 Query: 74 VGGIVSDLTGGLRGAHLKGSVVLMRKNALDFNDFGATVM 190 +GG+ LTG G +KG VLM + LD DF A+++ Sbjct: 2 LGGLKDKLTGK-NGNKIKGLAVLMSRKLLDPRDFTASLL 39
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 28.9 bits (63), Expect = 3.9 Identities = 11/22 (50%), Positives = 17/22 (77%) Frame = +2 Query: 104 GLRGAHLKGSVVLMRKNALDFN 169 G +G +KG++V+M+KN LD N Sbjct: 5 GQKGQKIKGTMVVMQKNVLDIN 26
>PYRH_DEIRA (Q9RU81) Uridylate kinase (EC 2.7.4.-) (UK) (Uridine monophosphate| kinase) (UMP kinase) Length = 245 Score = 28.9 bits (63), Expect = 3.9 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 4/44 (9%) Frame = +2 Query: 44 LPRDRAKMFGVGG----IVSDLTGGLRGAHLKGSVVLMRKNALD 163 L + R +FG G +D T LR + VVLM KNA+D Sbjct: 127 LEKGRVVIFGGGNGAPFFTTDTTSTLRALEIGADVVLMAKNAVD 170
>IWS1A_XENLA (Q6DE96) IWS1-like protein A| Length = 836 Score = 28.9 bits (63), Expect = 3.9 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 4/45 (8%) Frame = -3 Query: 187 DGGAEVVEVERVLAHEDDG---ALEVGAPEAPRQVAH-DAADAKH 65 DGGA V+ ER A +D+G E G+PE + H D D KH Sbjct: 13 DGGATPVQDERDSASDDEGNEQRSEPGSPEHQSEDEHSDVEDHKH 57
>GLTB_MAIZE (P23225) Ferredoxin-dependent glutamate synthase, chloroplast| precursor (EC 1.4.7.1) (Fd-GOGAT) Length = 1616 Score = 28.5 bits (62), Expect = 5.1 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -3 Query: 115 APEAPRQVAHDAADAKHLRSISGECG 38 AP AP++ AAD H+ S G CG Sbjct: 74 APPAPQKPTQQAADLNHILSERGACG 99
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 27.7 bits (60), Expect = 8.7 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = +2 Query: 113 GAHLKGSVVLMRKNALDFNDFGATV 187 G +KG+VVLM KN L+ N G+ V Sbjct: 5 GHKIKGTVVLMPKNELEVNPDGSAV 29 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 19,364,692 Number of Sequences: 219361 Number of extensions: 256948 Number of successful extensions: 1378 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 1350 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1377 length of database: 80,573,946 effective HSP length: 39 effective length of database: 72,018,867 effective search space used: 1728452808 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)