ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl43e11 |
|---|---|
| Clone Library Name | barley_pub |
>RMT2_NEUCR (Q7SCW9) Arginine N-methyltransferase 2 (EC 2.1.1.-)| Length = 429 Score = 32.0 bits (71), Expect = 0.37 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = +2 Query: 239 LEQQEEDEEMLVAHQELSAADSAQPMEVVVQTEPANTAESQAP 367 L+ +ED+E + +E A D + E+V E TAE + P Sbjct: 138 LDSDDEDDEEMAEGEEAQAEDGEEAPELVAAEEATQTAEEETP 180
>VIE1_MCMVS (P11210) Immediate-early protein 1 (IE1) (Immediate-early| phosphoprotein PP89) Length = 595 Score = 30.8 bits (68), Expect = 0.83 Identities = 16/46 (34%), Positives = 24/46 (52%) Frame = +2 Query: 236 PLEQQEEDEEMLVAHQELSAADSAQPMEVVVQTEPANTAESQAPED 373 PLE++EE E+ V + + + + V Q EPA A +A ED Sbjct: 420 PLEREEEQEDEQVEEEPPADEEEGGAVGGVTQEEPAGEATEEAEED 465
>POLG_HCVJP (Q9DHD6) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3032 Score = 30.4 bits (67), Expect = 1.1 Identities = 20/50 (40%), Positives = 26/50 (52%) Frame = +2 Query: 170 ISNPSSATAASDDGSMTMMTPSPLEQQEEDEEMLVAHQELSAADSAQPME 319 + PS TAASD GS++ M PLE + D ++ E A SA P E Sbjct: 2373 VQQPSGETAASDAGSLSSM--PPLEGEPGDPDL-----EFEPARSAPPSE 2415
>CALX_CAEEL (P34652) Calnexin homolog precursor| Length = 619 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/56 (26%), Positives = 25/56 (44%) Frame = +2 Query: 212 SMTMMTPSPLEQQEEDEEMLVAHQELSAADSAQPMEVVVQTEPANTAESQAPEDPQ 379 S + P P +++E E+ + SAA+ VV + EP E A + P+ Sbjct: 550 SGSQSNPEPQDEEENAEQQSANSSQSSAAEEEDDEHVVPENEPVKPTEEFAKKSPK 605
>E75BA_DROME (P17672) Ecdysone-induced protein 75B isoform A (E75-B)| Length = 1355 Score = 30.0 bits (66), Expect = 1.4 Identities = 16/61 (26%), Positives = 30/61 (49%) Frame = +2 Query: 191 TAASDDGSMTMMTPSPLEQQEEDEEMLVAHQELSAADSAQPMEVVVQTEPANTAESQAPE 370 T S+ S T + + QQ++ ++++ HQ+ +AA + +P N +ES E Sbjct: 148 TTTSNSNSNNTQTTNSISQQQQQHQIVLQHQQPAAAATPKP---CADLSAKNDSESGIDE 204 Query: 371 D 373 D Sbjct: 205 D 205
>YH57_SCHPO (O94312) PWWP domain protein C215.07c| Length = 568 Score = 29.3 bits (64), Expect = 2.4 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Frame = +2 Query: 164 SQISNPSSATAAS-DDGSMTMMTPSPLEQQEEDEEMLVAHQELSAADSAQPMEVVVQTEP 340 + I+N + AS D+GS + TPSP +Q D++ +++ ADS P + +T Sbjct: 455 ASIANENETEIASLDEGSESKPTPSPPAEQLTDQKQNEDNEDKVKADSNGPTQNENETAD 514 Query: 341 AN 346 A+ Sbjct: 515 AS 516
>PPNK_XANCP (Q8PAD9) Probable inorganic polyphosphate/ATP-NAD kinase (EC| 2.7.1.23) (Poly(P)/ATP NAD kinase) Length = 258 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/42 (33%), Positives = 25/42 (59%) Frame = +2 Query: 239 LEQQEEDEEMLVAHQELSAADSAQPMEVVVQTEPANTAESQA 364 + Q +DE+ L+A + + +P+E++VQTE +A S A Sbjct: 74 MNQYRDDEDDLLARLQRAEPAHLRPLEMLVQTESGTSAGSLA 115
>PPNK_XANC8 (Q4UT86) Probable inorganic polyphosphate/ATP-NAD kinase (EC| 2.7.1.23) (Poly(P)/ATP NAD kinase) Length = 258 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/42 (33%), Positives = 25/42 (59%) Frame = +2 Query: 239 LEQQEEDEEMLVAHQELSAADSAQPMEVVVQTEPANTAESQA 364 + Q +DE+ L+A + + +P+E++VQTE +A S A Sbjct: 74 MNQYRDDEDDLLARLQRAEPAHLRPLEMLVQTESGTSAGSLA 115
>PBPA_BACSU (P39793) Penicillin-binding protein 1A/1B (PBP1) [Includes:| Penicillin-insensitive transglycosylase (EC 2.4.2.-) (Peptidoglycan TGase); Penicillin-sensitive transpeptidase (EC 3.4.-.-) (DD-transpeptidase)] Length = 914 Score = 28.5 bits (62), Expect = 4.1 Identities = 16/61 (26%), Positives = 26/61 (42%) Frame = +2 Query: 191 TAASDDGSMTMMTPSPLEQQEEDEEMLVAHQELSAADSAQPMEVVVQTEPANTAESQAPE 370 TA SDDG T T + + E+DE+ Q + + QT+ + + Q + Sbjct: 773 TAVSDDGKSTASTSYEVPKAEDDEDKKDQQQTDDEKQDDEKTQDDTQTDDSQKDDGQTDQ 832 Query: 371 D 373 D Sbjct: 833 D 833
>APBA2_RAT (O35431) Amyloid beta A4 precursor protein-binding family A member| 2 (Neuron-specific X11L protein) (Neuronal Munc18-1-interacting protein 2) (Mint-2) (Adapter protein X11beta) Length = 750 Score = 28.1 bits (61), Expect = 5.4 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 7/52 (13%) Frame = +2 Query: 239 LEQQEEDEEMLVAHQELS-------AADSAQPMEVVVQTEPANTAESQAPED 373 LE+QEED + +VA ++S +A A P E + + +P ++ E+ +P D Sbjct: 220 LEEQEEDIDQIVAEIKMSLSMTSITSASEASP-EHMPELDPGDSTEACSPSD 270
>ABP1_SACEX (P38479) Actin-binding protein| Length = 617 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/48 (29%), Positives = 22/48 (45%) Frame = +2 Query: 230 PSPLEQQEEDEEMLVAHQELSAADSAQPMEVVVQTEPANTAESQAPED 373 P P+E+ EE+EE +E + A S + EP E + E+ Sbjct: 482 PEPVEEGEEEEEEEEEEEEEAPAPSLPSRNAAPEPEPEQPQEEEEEEE 529
>YB4H_SCHPO (O14362) KNR4/SMI1 homolog| Length = 504 Score = 28.1 bits (61), Expect = 5.4 Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 5/73 (6%) Frame = +2 Query: 179 PSSATAASDDGSMTMMTPSPLEQQEEDEEMLVAHQELSAADSAQPMEVVVQTEPAN---- 346 PS+ T DDG PL +DEE L+ +EL A + +PAN Sbjct: 381 PSTGTTVLDDGLDNNYEDIPLYGPSKDEE-LIKKEELEADTDLGLINTSEINQPANLPDE 439 Query: 347 -TAESQAPEDPQT 382 TAE+ P T Sbjct: 440 PTAETSNPVSATT 452
>MLH1_MOUSE (Q9JK91) DNA mismatch repair protein Mlh1 (MutL protein homolog 1)| Length = 760 Score = 28.1 bits (61), Expect = 5.4 Identities = 20/68 (29%), Positives = 29/68 (42%) Frame = +2 Query: 164 SQISNPSSATAASDDGSMTMMTPSPLEQQEEDEEMLVAHQELSAADSAQPMEVVVQTEPA 343 SQ +P+ A +GS P EDEEML AA ++ +E E + Sbjct: 406 SQPQDPAPVRGARTEGS-------PERATREDEEMLALPAPAEAAAESENLERESLMETS 458 Query: 344 NTAESQAP 367 + A+ AP Sbjct: 459 DAAQKAAP 466
>ASX_DROME (Q9V727) Polycomb protein Asx (Additional sex combs)| Length = 1669 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/48 (29%), Positives = 24/48 (50%) Frame = +2 Query: 239 LEQQEEDEEMLVAHQELSAADSAQPMEVVVQTEPANTAESQAPEDPQT 382 L QQ++ ++ VA A A+P+ ++ T PAN + + A T Sbjct: 1109 LLQQQQQQQQNVALPTTQAKFIAKPLNIISMTRPANASPTTAATTANT 1156
>CG034_HUMAN (Q96L11) Protein C7orf34 precursor (MSSP-binding protein CTM-1)| Length = 122 Score = 28.1 bits (61), Expect = 5.4 Identities = 18/53 (33%), Positives = 26/53 (49%) Frame = +2 Query: 179 PSSATAASDDGSMTMMTPSPLEQQEEDEEMLVAHQELSAADSAQPMEVVVQTE 337 P + + DGS T TPS + QE+ EE VA S + Q +++ Q E Sbjct: 25 PLNGSPGPKDGSQTEKTPSADQNQEQFEEHFVAS---SVGEMWQVVDMAQQEE 74
>FGD5_HUMAN (Q6ZNL6) FYVE, RhoGEF and PH domain-containing protein 5 (Zinc| finger FYVE domain-containing protein 23) Length = 1462 Score = 27.7 bits (60), Expect = 7.0 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 7/67 (10%) Frame = +2 Query: 194 AASDDGSMTMMTPSPLEQ---QEEDEEMLVAHQELSAADSAQ-PMEVVVQTE---PANTA 352 A D+G P LEQ EE+E+++ H+E S DS E V Q++ P Sbjct: 142 ALEDEGEGCADEPGTLEQVSRSEEEEKLVQPHRECSLEDSGPWAGEGVFQSDLLLPHIHG 201 Query: 353 ESQAPED 373 E Q P D Sbjct: 202 EDQEPPD 208
>DRS1_DEBHA (Q6BTL5) ATP-dependent RNA helicase DRS1 (EC 3.6.1.-)| Length = 771 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Frame = +2 Query: 239 LEQQEEDEEMLVAHQELSAADSAQPMEVVVQTEPANT-AESQAPEDPQT 382 L+++++ +EML A ELS A + E +Q+ P T ES+ + QT Sbjct: 669 LDEEKQAKEMLHAEMELSKATNMIKHEKEIQSRPRRTWFESEKDKKHQT 717
>CAD_DROME (P09085) Homeotic protein caudal| Length = 427 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/48 (29%), Positives = 18/48 (37%) Frame = +3 Query: 42 GPGKSPRTSCLHFPKLLPVRRLSPYASXXXXXXLAARGSPPHRSLTHH 185 GPG +P H + LP ++ S S PH L HH Sbjct: 162 GPGSAPPNHQQHIAEGLPSPPITVSGSEISSPGAPTSASSPHHHLAHH 209
>POLG_HCVJ8 (P26661) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3032 Score = 27.7 bits (60), Expect = 7.0 Identities = 18/50 (36%), Positives = 25/50 (50%) Frame = +2 Query: 170 ISNPSSATAASDDGSMTMMTPSPLEQQEEDEEMLVAHQELSAADSAQPME 319 + PS TAAS+ GS++ M PLE + D ++ E SA P E Sbjct: 2373 VQQPSDETAASEAGSLSSM--PPLEGEPGDPDL-----EFEPVGSAPPSE 2415
>CCL8_MOUSE (Q9Z121) Small inducible cytokine A8 precursor (CCL8) (Monocyte| chemotactic protein 2) (MCP-2) (Monocyte chemoattractant protein 2) Length = 97 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 7/42 (16%) Frame = +3 Query: 12 ICHLLML*PA------GPGKSPRTSCLHFPKL-LPVRRLSPY 116 +C LL+ P GP K+P T C H KL +P+R L Y Sbjct: 8 LCLLLIAVPVSPEKLTGPDKAPVTCCFHVLKLKIPLRVLKSY 49
>WDR75_XENLA (Q6DFC6) WD-repeat protein 75| Length = 832 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +2 Query: 242 EQQEEDEEMLVAHQELSAADSAQPME 319 E+ +EDEEM H E ++D + ME Sbjct: 768 EESKEDEEMKSEHSEADSSDETEEME 793
>VP53_BPAPS (Q9T1P5) Putative protein p53| Length = 307 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%) Frame = +2 Query: 215 MTMMTPSPLEQQEEDEEMLVAHQELSAADSAQPMEVVVQTE--PANTAESQAPE 370 +T TP E +ML+AH +L+ A + ++VVQ E P E+ P+ Sbjct: 2 LTANTPLLARLAENHTQMLMAHNQLTEAHTMLISQLVVQFEHDPHEPTEANKPK 55
>IF2_SYNP6 (Q5N0A5) Translation initiation factor IF-2| Length = 1030 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/22 (50%), Positives = 18/22 (81%) Frame = +2 Query: 239 LEQQEEDEEMLVAHQELSAADS 304 L Q ++D+++L A QEL+AAD+ Sbjct: 362 LIQDDDDDDLLTAEQELAAADA 383
>GLU2B_HUMAN (P14314) Glucosidase 2 beta subunit precursor (Glucosidase II beta| subunit) (Protein kinase C substrate, 60.1 kDa protein, heavy chain) (PKCSH) (80K-H protein) Length = 527 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Frame = +2 Query: 242 EQQEEDEEMLVAHQELSAADSAQPMEVVVQTEPANTAE--SQAPEDPQT 382 E++EE+EE A +E DS + + +PA+ AE P D QT Sbjct: 314 EEEEEEEEEEEAEEEEEEEDSEEAPPPLSPPQPASPAEEDKMPPYDEQT 362
>APBA2_MOUSE (P98084) Amyloid beta A4 precursor protein-binding family A member| 2 (Neuron-specific X11L protein) (Neuronal Munc18-1-interacting protein 2) (Mint-2) (Adapter protein X11beta) Length = 750 Score = 27.3 bits (59), Expect = 9.1 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 7/52 (13%) Frame = +2 Query: 239 LEQQEEDEEMLVAHQELS-------AADSAQPMEVVVQTEPANTAESQAPED 373 LE+QEED + +VA ++S +A A P E + + +P ++ E+ P D Sbjct: 220 LEEQEEDIDQIVAEIKMSLSMTSITSASEASP-EHMPELDPGDSTEACPPSD 270
>MYT1_HUMAN (Q01538) Myelin transcription factor 1 (MyT1) (MyTI) (Proteolipid| protein-binding protein) (PLPB1) Length = 1121 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/43 (27%), Positives = 24/43 (55%) Frame = +2 Query: 242 EQQEEDEEMLVAHQELSAADSAQPMEVVVQTEPANTAESQAPE 370 E++EE+EE +E + +V+ Q + ++T+ +APE Sbjct: 285 EEEEEEEEEEEEEEEEEEEEEEAAPDVIFQEDTSHTSAQKAPE 327
>TPR_HUMAN (P12270) Nucleoprotein TPR| Length = 2349 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/30 (40%), Positives = 20/30 (66%) Frame = +2 Query: 293 AADSAQPMEVVVQTEPANTAESQAPEDPQT 382 AA+S+ EV + +P++ +E QAP PQ+ Sbjct: 2030 AAESSFSQEVSREQQPSSASERQAPRAPQS 2059
>USA1_YEAST (Q03714) U1 SNP1-associating protein 1| Length = 838 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +2 Query: 230 PSPLEQQEEDEEMLVAHQELSAADSAQP 313 PS +Q+ EDE +++ +E A AQP Sbjct: 803 PSAQQQENEDEALIIPDEEEPTATGAQP 830
>YKF4_YEAST (P35732) Hypothetical 84.0 kDa protein in NUP120-CSE4 intergenic| region Length = 738 Score = 27.3 bits (59), Expect = 9.1 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 6/57 (10%) Frame = +2 Query: 227 TPSPLEQQEE-----DEEMLVAHQELS-AADSAQPMEVVVQTEPANTAESQAPEDPQ 379 T LEQ+++ +EE+ V +++ +A ++P E T P +SQ P+ PQ Sbjct: 338 TAEELEQEQDNVAAPEEEVTVVEEKVEISAVISEPPEDQANTVPQPQQQSQQPQQPQ 394 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,411,591 Number of Sequences: 219361 Number of extensions: 413119 Number of successful extensions: 2181 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 2069 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2165 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 1391514312 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
