ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl43e10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
2gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 54 3e-04
3emb|AL844874.1|CNS08CAX Oryza sativa chromosome 12, . BAC OSJNBa... 54 3e-04
4gb|AC007418.9| Drosophila melanogaster clone BACR16P22, complete... 44 0.33
5gb|AC009208.6| Drosophila melanogaster clone BACR31I21, complete... 44 0.33
6ref|NM_206086.1| Drosophila melanogaster pipsqueak CG2368-RC, tr... 44 0.33
7ref|NM_176143.1| Drosophila melanogaster pipsqueak CG2368-RH, tr... 44 0.33
8ref|NM_176142.1| Drosophila melanogaster pipsqueak CG2368-RG, tr... 44 0.33
9ref|NM_176141.1| Drosophila melanogaster pipsqueak CG2368-RF, tr... 44 0.33
10ref|NM_165792.1| Drosophila melanogaster pipsqueak CG2368-RE, tr... 44 0.33
11ref|NM_165791.1| Drosophila melanogaster pipsqueak CG2368-RD, tr... 44 0.33
12ref|NM_165790.1| Drosophila melanogaster pipsqueak CG2368-RA, tr... 44 0.33
13ref|NM_078962.2| Drosophila melanogaster pipsqueak CG2368-RB, tr... 44 0.33
14ref|NM_001014520.1| Drosophila melanogaster pipsqueak CG2368-RI,... 44 0.33
15ref|NM_001014519.1| Drosophila melanogaster pipsqueak CG2368-RJ,... 44 0.33
16ref|NM_001014518.1| Drosophila melanogaster pipsqueak CG2368-RK,... 44 0.33
17ref|NM_001014517.1| Drosophila melanogaster pipsqueak CG2368-RL,... 44 0.33
18gb|AE009919.1|AE009919 Pyrobaculum aerophilum strain IM2 section... 44 0.33
19gb|AY069588.1| Drosophila melanogaster LD33470 full length cDNA 44 0.33
20dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 44 0.33
21gb|AE003829.4| Drosophila melanogaster chromosome 2R, section 21... 44 0.33
22gb|U48402.1|DMU48402 Drosophila melanogaster pipsqueak (psq) mRN... 44 0.33
23gb|U48358.1|DMU48358 Drosophila melanogaster pipsqueak (psq) mRN... 44 0.33
24emb|AJ890364.1| Emiliania huxleyi virus 86 isolate EhV86 44 0.33
25gb|AC079888.10| Oryza sativa chromosome 10 BAC OSJNBa0078O01 gen... 42 1.3
26dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
27dbj|AK071551.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
28gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
29ref|NM_190668.1| Oryza sativa (japonica cultivar-group), predic... 40 5.1
30ref|XM_429190.1| PREDICTED: Gallus gallus similar to PHD finger ... 40 5.1
31gb|AC104847.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.1
32gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.1
33ref|XM_756260.1| Ustilago maydis 521 hypothetical protein (UM052... 40 5.1
34gb|AC135907.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 5.1
35ref|XM_778123.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 5.1
36gb|AC165428.1| Strongylocentrotus purpuratus BAC clone contig co... 40 5.1
37gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 40 5.1
38gb|AC093438.2| Drosophila melanogaster 3L BAC RP98-26C20 (Roswel... 40 5.1
39gb|AC091223.2| Drosophila melanogaster 3L BAC RP98-48G6 (Roswell... 40 5.1
40gb|AF305543.1|AF305543 Chlamydomonas reinhardtii cytochrome c ox... 40 5.1
41dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
42dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
43dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
44dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
45gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 5.1
46dbj|AP003415.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
47dbj|AP003289.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
48gb|AC073895.22| Homo sapiens 3 BAC RP11-622L21 (Roswell Park Can... 40 5.1
49dbj|AP005760.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
50dbj|AP004803.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
51gb|AE003541.3| Drosophila melanogaster chromosome 3L, section 44... 40 5.1
52gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.1
53gb|U02620.1|GME75A Galleria mellonella ecdysteroid-induced (E75)... 40 5.1 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 72/87 (82%)
 Strand = Plus / Plus

                                                                           
Query: 141     gggcagtcttccgccagcgcttttgggcagacctctagcaaccctttcggagcccaatca 200
               |||||||| ||| | ||| |||| || |||||||| ||||||||||| || |||||  ||
Sbjct: 3346439 gggcagtcgtccactagccctttcggccagacctcaagcaacccttttggggcccagaca 3346498

                                          
Query: 201     gggttcggccagaccagcaccgccacc 227
               || || |||||| |||||||| |||||
Sbjct: 3346499 ggatttggccaggccagcacctccacc 3346525



 Score = 46.1 bits (23), Expect = 0.083
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                              
Query: 160     cttttgggcagacctctagcaaccctttcgg 190
               |||||||||||||||| |||||||| |||||
Sbjct: 3337801 cttttgggcagacctcaagcaacccattcgg 3337831



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 315     tttggtcagccatccgctccggcgtt 340
               ||||| ||||||||||||||||||||
Sbjct: 3338064 tttggccagccatccgctccggcgtt 3338089



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 315     tttggtcagccatccgctccggcgtt 340
               ||||| ||||||||||||||||||||
Sbjct: 3338016 tttggccagccatccgctccggcgtt 3338041
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 72/87 (82%)
 Strand = Plus / Plus

                                                                           
Query: 141     gggcagtcttccgccagcgcttttgggcagacctctagcaaccctttcggagcccaatca 200
               |||||||| ||| | ||| |||| || |||||||| ||||||||||| || |||||  ||
Sbjct: 3346384 gggcagtcgtccactagccctttcggccagacctcaagcaacccttttggggcccagaca 3346443

                                          
Query: 201     gggttcggccagaccagcaccgccacc 227
               || || |||||| |||||||| |||||
Sbjct: 3346444 ggatttggccaggccagcacctccacc 3346470



 Score = 46.1 bits (23), Expect = 0.083
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                              
Query: 160     cttttgggcagacctctagcaaccctttcgg 190
               |||||||||||||||| |||||||| |||||
Sbjct: 3337746 cttttgggcagacctcaagcaacccattcgg 3337776



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 315     tttggtcagccatccgctccggcgtt 340
               ||||| ||||||||||||||||||||
Sbjct: 3338009 tttggccagccatccgctccggcgtt 3338034



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 315     tttggtcagccatccgctccggcgtt 340
               ||||| ||||||||||||||||||||
Sbjct: 3337961 tttggccagccatccgctccggcgtt 3337986
to top
>emb|AL844874.1|CNS08CAX Oryza sativa chromosome 12, . BAC OSJNBa0041K23 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 137936

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 72/87 (82%)
 Strand = Plus / Plus

                                                                         
Query: 141   gggcagtcttccgccagcgcttttgggcagacctctagcaaccctttcggagcccaatca 200
             |||||||| ||| | ||| |||| || |||||||| ||||||||||| || |||||  ||
Sbjct: 25492 gggcagtcgtccactagccctttcggccagacctcaagcaacccttttggggcccagaca 25551

                                        
Query: 201   gggttcggccagaccagcaccgccacc 227
             || || |||||| |||||||| |||||
Sbjct: 25552 ggatttggccaggccagcacctccacc 25578



 Score = 46.1 bits (23), Expect = 0.083
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 160   cttttgggcagacctctagcaaccctttcgg 190
             |||||||||||||||| |||||||| |||||
Sbjct: 16854 cttttgggcagacctcaagcaacccattcgg 16884



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 315   tttggtcagccatccgctccggcgtt 340
             ||||| ||||||||||||||||||||
Sbjct: 17117 tttggccagccatccgctccggcgtt 17142



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 315   tttggtcagccatccgctccggcgtt 340
             ||||| ||||||||||||||||||||
Sbjct: 17069 tttggccagccatccgctccggcgtt 17094
to top
>gb|AC007418.9| Drosophila melanogaster clone BACR16P22, complete sequence
          Length = 179325

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 292    ccacctcctccaccgccggtgc 313
              ||||||||||||||||||||||
Sbjct: 171635 ccacctcctccaccgccggtgc 171614
to top
>gb|AC009208.6| Drosophila melanogaster clone BACR31I21, complete sequence
          Length = 152443

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 292    ccacctcctccaccgccggtgc 313
              ||||||||||||||||||||||
Sbjct: 103814 ccacctcctccaccgccggtgc 103793
to top
>ref|NM_206086.1| Drosophila melanogaster pipsqueak CG2368-RC, transcript variant C
            (psq), mRNA
          Length = 5090

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 292  ccacctcctccaccgccggtgc 313
            ||||||||||||||||||||||
Sbjct: 3729 ccacctcctccaccgccggtgc 3708
to top
>ref|NM_176143.1| Drosophila melanogaster pipsqueak CG2368-RH, transcript variant H
            (psq), mRNA
          Length = 4549

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 292  ccacctcctccaccgccggtgc 313
            ||||||||||||||||||||||
Sbjct: 3188 ccacctcctccaccgccggtgc 3167
to top
>ref|NM_176142.1| Drosophila melanogaster pipsqueak CG2368-RG, transcript variant G
            (psq), mRNA
          Length = 4515

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 292  ccacctcctccaccgccggtgc 313
            ||||||||||||||||||||||
Sbjct: 3154 ccacctcctccaccgccggtgc 3133
to top
>ref|NM_176141.1| Drosophila melanogaster pipsqueak CG2368-RF, transcript variant F
            (psq), mRNA
          Length = 4782

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 292  ccacctcctccaccgccggtgc 313
            ||||||||||||||||||||||
Sbjct: 3421 ccacctcctccaccgccggtgc 3400
to top
>ref|NM_165792.1| Drosophila melanogaster pipsqueak CG2368-RE, transcript variant E
            (psq), mRNA
          Length = 4642

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 292  ccacctcctccaccgccggtgc 313
            ||||||||||||||||||||||
Sbjct: 3281 ccacctcctccaccgccggtgc 3260
to top
>ref|NM_165791.1| Drosophila melanogaster pipsqueak CG2368-RD, transcript variant D
            (psq), mRNA
          Length = 4724

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 292  ccacctcctccaccgccggtgc 313
            ||||||||||||||||||||||
Sbjct: 3363 ccacctcctccaccgccggtgc 3342
to top
>ref|NM_165790.1| Drosophila melanogaster pipsqueak CG2368-RA, transcript variant A
            (psq), mRNA
          Length = 5304

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 292  ccacctcctccaccgccggtgc 313
            ||||||||||||||||||||||
Sbjct: 3943 ccacctcctccaccgccggtgc 3922
to top
>ref|NM_078962.2| Drosophila melanogaster pipsqueak CG2368-RB, transcript variant B
            (psq), mRNA
          Length = 5358

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 292  ccacctcctccaccgccggtgc 313
            ||||||||||||||||||||||
Sbjct: 3997 ccacctcctccaccgccggtgc 3976
to top
>ref|NM_001014520.1| Drosophila melanogaster pipsqueak CG2368-RI, transcript variant I
            (psq), mRNA
          Length = 5522

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 292  ccacctcctccaccgccggtgc 313
            ||||||||||||||||||||||
Sbjct: 4161 ccacctcctccaccgccggtgc 4140
to top
>ref|NM_001014519.1| Drosophila melanogaster pipsqueak CG2368-RJ, transcript variant J
            (psq), mRNA
          Length = 4888

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 292  ccacctcctccaccgccggtgc 313
            ||||||||||||||||||||||
Sbjct: 3527 ccacctcctccaccgccggtgc 3506
to top
>ref|NM_001014518.1| Drosophila melanogaster pipsqueak CG2368-RK, transcript variant K
            (psq), mRNA
          Length = 4946

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 292  ccacctcctccaccgccggtgc 313
            ||||||||||||||||||||||
Sbjct: 3585 ccacctcctccaccgccggtgc 3564
to top
>ref|NM_001014517.1| Drosophila melanogaster pipsqueak CG2368-RL, transcript variant L
            (psq), mRNA
          Length = 5522

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 292  ccacctcctccaccgccggtgc 313
            ||||||||||||||||||||||
Sbjct: 4161 ccacctcctccaccgccggtgc 4140
to top
>gb|AE009919.1|AE009919 Pyrobaculum aerophilum strain IM2 section 174 of 201 of the complete
            genome
          Length = 10746

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 288  ggcgccacctcctccaccgccg 309
            ||||||||||||||||||||||
Sbjct: 3066 ggcgccacctcctccaccgccg 3045
to top
>gb|AY069588.1| Drosophila melanogaster LD33470 full length cDNA
          Length = 5307

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 292  ccacctcctccaccgccggtgc 313
            ||||||||||||||||||||||
Sbjct: 3934 ccacctcctccaccgccggtgc 3913
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 233     cttcggcagcccgaccaccgcc 254
               ||||||||||||||||||||||
Sbjct: 8383722 cttcggcagcccgaccaccgcc 8383743
to top
>gb|AE003829.4| Drosophila melanogaster chromosome 2R, section 21 of 73 of the complete
              sequence
          Length = 281782

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 292    ccacctcctccaccgccggtgc 313
              ||||||||||||||||||||||
Sbjct: 251279 ccacctcctccaccgccggtgc 251258
to top
>gb|U48402.1|DMU48402 Drosophila melanogaster pipsqueak (psq) mRNA, alternative ovarian
            transcript psq-2, complete cds
          Length = 4433

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 292  ccacctcctccaccgccggtgc 313
            ||||||||||||||||||||||
Sbjct: 3063 ccacctcctccaccgccggtgc 3042
to top
>gb|U48358.1|DMU48358 Drosophila melanogaster pipsqueak (psq) mRNA, primary ovarian
            transcript psq-1, complete cds
          Length = 5162

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 292  ccacctcctccaccgccggtgc 313
            ||||||||||||||||||||||
Sbjct: 3984 ccacctcctccaccgccggtgc 3963
to top
>emb|AJ890364.1| Emiliania huxleyi virus 86 isolate EhV86
          Length = 407339

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 290    cgccacctcctccaccgccggtgcgt 315
              |||||||||| |||||||||||||||
Sbjct: 272319 cgccacctccgccaccgccggtgcgt 272344
to top
>gb|AC079888.10| Oryza sativa chromosome 10 BAC OSJNBa0078O01 genomic sequence, complete
             sequence
          Length = 146664

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 290   cgccacctcctccaccgccgg 310
             |||||||||||||||||||||
Sbjct: 91177 cgccacctcctccaccgccgg 91197
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 290      cgccacctcctccaccgccgg 310
                |||||||||||||||||||||
Sbjct: 18587366 cgccacctcctccaccgccgg 18587386
to top
>dbj|AK071551.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106C12, full
           insert sequence
          Length = 1512

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 290 cgccacctcctccaccgccgg 310
           |||||||||||||||||||||
Sbjct: 66  cgccacctcctccaccgccgg 86
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 290      cgccacctcctccaccgccgg 310
                |||||||||||||||||||||
Sbjct: 18598219 cgccacctcctccaccgccgg 18598239
to top
>ref|NM_190668.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1359

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 282 cctttcggcgccacctcctccaccgccg 309
           |||||||||||||||||| || ||||||
Sbjct: 941 cctttcggcgccacctccgccgccgccg 914
to top
>ref|XM_429190.1| PREDICTED: Gallus gallus similar to PHD finger protein 7 (LOC431638),
            mRNA
          Length = 1806

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 205  tcggccagaccagcaccgcc 224
            ||||||||||||||||||||
Sbjct: 1485 tcggccagaccagcaccgcc 1504
to top
>gb|AC104847.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone
             P0480H08, complete sequence
          Length = 156301

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 290   cgccacctcctccaccgccg 309
             ||||||||||||||||||||
Sbjct: 42412 cgccacctcctccaccgccg 42393
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 293      cacctcctccaccgccggtg 312
                ||||||||||||||||||||
Sbjct: 13982633 cacctcctccaccgccggtg 13982652
to top
>ref|XM_756260.1| Ustilago maydis 521 hypothetical protein (UM05206.1) partial mRNA
          Length = 4086

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 205 tcggccagaccagcaccgccacca 228
           ||||||||||||||||| ||||||
Sbjct: 336 tcggccagaccagcaccaccacca 359
to top
>gb|AC135907.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1057D12,
             from chromosome 3, complete sequence
          Length = 161676

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 293   cacctcctccaccgccggtg 312
             ||||||||||||||||||||
Sbjct: 28849 cacctcctccaccgccggtg 28830
to top
>ref|XM_778123.1| PREDICTED: Strongylocentrotus purpuratus similar to Homeobox
           protein Hox-C9a (Hox-C9) (LOC577924), mRNA
          Length = 1038

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 290 cgccacctcctccaccgccg 309
           ||||||||||||||||||||
Sbjct: 211 cgccacctcctccaccgccg 192
to top
>gb|AC165428.1| Strongylocentrotus purpuratus BAC clone contig containing Eve, the hox
              cluster, cholinesterase, and COLP5alpha genes, complete
              sequence
          Length = 796348

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 290    cgccacctcctccaccgccg 309
              ||||||||||||||||||||
Sbjct: 404384 cgccacctcctccaccgccg 404365
to top
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 289     gcgccacctcctccaccgcc 308
               ||||||||||||||||||||
Sbjct: 1942385 gcgccacctcctccaccgcc 1942404
to top
>gb|AC093438.2| Drosophila melanogaster 3L BAC RP98-26C20 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 167344

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 209    ccagaccagcaccgccacca 228
              ||||||||||||||||||||
Sbjct: 131359 ccagaccagcaccgccacca 131340
to top
>gb|AC091223.2| Drosophila melanogaster 3L BAC RP98-48G6 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 170988

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 209   ccagaccagcaccgccacca 228
             ||||||||||||||||||||
Sbjct: 22245 ccagaccagcaccgccacca 22226
to top
>gb|AF305543.1|AF305543 Chlamydomonas reinhardtii cytochrome c oxidase subunit II (cox2b)
           gene, complete cds; nuclear gene for mitochondrial
           product
          Length = 2877

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 363 tttggggccgcgccggctgg 382
           ||||||||||||||||||||
Sbjct: 239 tttggggccgcgccggctgg 258
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 290      cgccacctcctccaccgccg 309
                ||||||||||||||||||||
Sbjct: 21284940 cgccacctcctccaccgccg 21284921
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 290      cgccacctcctccaccgccg 309
                ||||||||||||||||||||
Sbjct: 26661560 cgccacctcctccaccgccg 26661541
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 293      cacctcctccaccgccggtg 312
                ||||||||||||||||||||
Sbjct: 13977608 cacctcctccaccgccggtg 13977627
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 282      cctttcggcgccacctcctccaccgccg 309
                |||||||||||||||||| || ||||||
Sbjct: 37006126 cctttcggcgccacctccgccgccgccg 37006099
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 273     accacctcgcctttcggcgccacctcct 300
               ||||||||||| |||||||||| |||||
Sbjct: 1537152 accacctcgccgttcggcgccagctcct 1537179
to top
>dbj|AP003415.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1402_H07
          Length = 140620

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 282   cctttcggcgccacctcctccaccgccg 309
             |||||||||||||||||| || ||||||
Sbjct: 96430 cctttcggcgccacctccgccgccgccg 96403
to top
>dbj|AP003289.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0683F02
          Length = 153388

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 282  cctttcggcgccacctcctccaccgccg 309
            |||||||||||||||||| || ||||||
Sbjct: 7267 cctttcggcgccacctccgccgccgccg 7240
to top
>gb|AC073895.22| Homo sapiens 3 BAC RP11-622L21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 167311

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    gatagaggaagaagaaacac 38
             ||||||||||||||||||||
Sbjct: 72941 gatagaggaagaagaaacac 72922
to top
>dbj|AP005760.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:B1047G05
          Length = 145431

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 290   cgccacctcctccaccgccg 309
             ||||||||||||||||||||
Sbjct: 19023 cgccacctcctccaccgccg 19004
to top
>dbj|AP004803.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0677B10
          Length = 134423

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 290   cgccacctcctccaccgccg 309
             ||||||||||||||||||||
Sbjct: 77990 cgccacctcctccaccgccg 77971
to top
>gb|AE003541.3| Drosophila melanogaster chromosome 3L, section 44 of 83 of the complete
              sequence
          Length = 265524

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 209    ccagaccagcaccgccacca 228
              ||||||||||||||||||||
Sbjct: 142397 ccagaccagcaccgccacca 142378
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 290      cgccacctcctccaccgccg 309
                ||||||||||||||||||||
Sbjct: 21595139 cgccacctcctccaccgccg 21595120
to top
>gb|U02620.1|GME75A Galleria mellonella ecdysteroid-induced (E75) mRNA, complete cds
          Length = 2478

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 290  cgccacctcctccaccgccg 309
            ||||||||||||||||||||
Sbjct: 2264 cgccacctcctccaccgccg 2283


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,971,791
Number of Sequences: 3902068
Number of extensions: 1971791
Number of successful extensions: 48981
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48313
Number of HSP's gapped (non-prelim): 668
length of query: 385
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 363
effective length of database: 17,147,199,772
effective search space: 6224433517236
effective search space used: 6224433517236
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top