>STRN_SORMA (Q70M86) Striatin Pro11|
          Length = 845

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 245 HDPHSPRSKLKTSTWSPGRSFRSPAAATGDGW 150
           H  HS  + L  ++WSP  +F +   A GDGW
Sbjct: 484 HRGHSG-AVLSLASWSPSPNFSTGGRAQGDGW 514

>MYCT_RAT (Q921A2) Proton myo-inositol cotransporter (H(+)-myo-inositol|
           cotransporter) (Hmit)
          Length = 618

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 139 KRRRQPSPVAAAGERKLLPGD 201
           +RRRQP P A  GER LL  +
Sbjct: 4   RRRRQPEPGAPGGERSLLAAE 24

>Y135_TREPA (O83171) Hypothetical protein TP0135|
          Length = 313

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 7/36 (19%)
 Frame = -3

Query: 248 CHDPHSPRSKLKTSTWSPG-------RSFRSPAAAT 162
           C+ P SPR+ L  STW  G       R+   PAA T
Sbjct: 157 CNAPRSPRAVLHQSTWKRGTAPINETRAIPRPAAVT 192

>POLS_RUBVT (P07566) Structural polyprotein [Contains: Nucleocapsid protein C;|
           Membrane glycoprotein E2; Membrane glycoprotein E1]
          Length = 1063

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 81  SNPRPSVAARGARNAAGDPEAEAPAVPC 164
           +NP  +  ARG R    DP+ EAP   C
Sbjct: 126 TNPFQAAVARGLRPPLHDPDTEAPTEAC 153

>POLS_RUBVR (P19725) Structural polyprotein [Contains: Nucleocapsid protein C;|
           Membrane glycoprotein E2; Membrane glycoprotein E1]
          Length = 1063

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 81  SNPRPSVAARGARNAAGDPEAEAPAVPC 164
           +NP  +  ARG R    DP+ EAP   C
Sbjct: 126 TNPFQAAVARGLRPPLHDPDTEAPTEAC 153

>POLS_RUBVH (P21480) Structural polyprotein [Contains: Nucleocapsid protein C;|
           Membrane glycoprotein E2; Membrane glycoprotein E1]
          Length = 1063

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 81  SNPRPSVAARGARNAAGDPEAEAPAVPC 164
           +NP  +  ARG R    DP+ EAP   C
Sbjct: 126 TNPFQAAVARGLRPPLHDPDTEAPTEAC 153

>POLS_RUBVM (P08563) Structural polyprotein [Contains: Nucleocapsid protein C;|
           Membrane glycoprotein E2; Membrane glycoprotein E1]
          Length = 992

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 81  SNPRPSVAARGARNAAGDPEAEAPAVPC 164
           +NP  +  ARG R    DP+ EAP   C
Sbjct: 125 TNPFQAAVARGLRPPLHDPDTEAPTEAC 152

>CO1A2_CHICK (P02467) Collagen alpha-2(I) chain precursor (Fragments)|
          Length = 1362

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 109 AAPAMPRGIPKRRRQPSPVAAAG 177
           A PA  RGIP  R +P PV  +G
Sbjct: 700 AGPAGARGIPGERGEPGPVGPSG 722


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,239,469
Number of Sequences: 219361
Number of extensions: 305472
Number of successful extensions: 1538
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1538
length of database: 80,573,946
effective HSP length: 60
effective length of database: 67,412,286
effective search space used: 1617894864
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)