Clone Information

BLAST Search Result

Clone Name	bastl43e04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	POLR_KYMVJ (P36304) RNA replicase polyprotein (EC 2.7.7.48)	34	0.085
2	CENG1_MOUSE (Q3UHD9) Centaurin-gamma 1 (ARF-GAP with GTP-binding...	32	0.42
3	KLF13_MOUSE (Q9JJZ6) Krueppel-like factor 13 (Transcription fact...	31	0.94
4	DTD_STRAW (Q82G71) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-)	30	1.2
5	LIPA3_MOUSE (P60469) Liprin-alpha-3 (Protein tyrosine phosphatas...	30	1.6
6	DTD_STRCO (Q9K4F6) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-)	30	1.6
7	LIPA3_RAT (Q91Z79) Liprin-alpha-3 (Protein tyrosine phosphatase ...	30	1.6
8	CSR2B_HUMAN (Q9H8E8) Cysteine-rich protein 2-binding protein (CS...	30	1.6
9	CENG1_HUMAN (Q99490) Centaurin-gamma 1 (ARF-GAP with GTP-binding...	30	2.1
10	CENG1_RAT (Q8CGU4) Centaurin-gamma 1 (ARF-GAP with GTP-binding p...	30	2.1
11	MINC_XANAC (Q8PN47) Probable septum site-determining protein minC	29	2.7
12	CTDP1_HUMAN (Q9Y5B0) RNA polymerase II subunit A C-terminal doma...	29	2.7
13	XKR6_HUMAN (Q5GH73) XK-related protein 6	29	3.6
14	TEGU_EBV (P03186) Large tegument protein	29	3.6
15	CRDL1_MOUSE (Q920C1) Chordin-like protein 1 precursor (Neuralin)...	29	3.6
16	XKR6_RAT (Q5GH57) XK-related protein 6	29	3.6
17	FA8A1_HUMAN (Q9UBU6) Protein FAM8A1 (Autosomal highly conserved ...	28	4.7
18	EBNA2_EBVG (Q3KSV2) Epstein-Barr nuclear antigen 2 (EBV nuclear ...	28	4.7
19	EMAL4_HUMAN (Q9HC35) Echinoderm microtubule-associated protein-l...	28	4.7
20	CMTA2_HUMAN (O94983) Calmodulin-binding transcription activator 2	28	4.7
21	EBNA2_EBV (P12978) Epstein-Barr nuclear antigen 2 (EBV nuclear a...	28	4.7
22	POLG_HCVJ8 (P26661) Genome polyprotein [Contains: Core protein p...	28	6.1
23	CDN1C_HUMAN (P49918) Cyclin-dependent kinase inhibitor 1C (Cycli...	28	6.1
24	MINC_XANCP (Q8PBJ4) Probable septum site-determining protein minC	28	6.1
25	ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 prot...	28	6.1
26	DPOL_ADEG1 (Q64751) DNA polymerase (EC 2.7.7.7)	28	6.1
27	EGLN2_HUMAN (Q96KS0) Egl nine homolog 2 (EC 1.14.11.-) (Hypoxia-...	28	6.1
28	Y1673_SYNY3 (P74261) Hypothetical tRNA/rRNA methyltransferase sl...	28	6.1
29	ATX2_HUMAN (Q99700) Ataxin-2 (Spinocerebellar ataxia type 2 prot...	28	6.1
30	PGBM_MOUSE (Q05793) Basement membrane-specific heparan sulfate p...	28	6.1
31	SFTA2_HUMAN (Q8IWL1) Pulmonary surfactant-associated protein A2 ...	28	7.9
32	POLG_HCVVA (Q9QAX1) Genome polyprotein [Contains: Core protein p...	28	7.9
33	ZN553_MOUSE (Q3US17) Zinc finger protein 553	28	7.9
34	ZN553_HUMAN (Q96MX3) Zinc finger protein 553	28	7.9
35	RPP38_HUMAN (P78345) Ribonuclease P protein subunit p38 (EC 3.1....	28	7.9
36	CPSF6_MOUSE (Q6NVF9) Cleavage and polyadenylation specificity fa...	28	7.9
37	CPSF6_HUMAN (Q16630) Cleavage and polyadenylation specificity fa...	28	7.9
38	VGP3_EBV (P03200) Envelope glycoprotein GP340/GP220 (Membrane an...	28	7.9
39	PGBM_HUMAN (P98160) Basement membrane-specific heparan sulfate p...	28	7.9
40	CPSF6_PONPY (Q5NVH8) Cleavage and polyadenylation specificity fa...	28	7.9

>POLR_KYMVJ (P36304) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1874

 Score = 34.3 bits (77), Expect = 0.085
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -3

Query: 209 PPRPNAISPTSTCTGPPRCTRPVYISSIHQRF 114
           PP PN  +PTS+ T PP    P+   SIH  F
Sbjct: 694 PPAPNKPTPTSSSTTPPSPNLPLQFGSIHSPF 725

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>CENG1_MOUSE (Q3UHD9) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,|
           ankyrin repeat and pleckstrin homology domains 2)
           (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE)
          Length = 1186

 Score = 32.0 bits (71), Expect = 0.42
 Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
 Frame = +3

Query: 6   SIPSPPPRDPLGAAPQLPGRRGA--------RGVWQEAASQQSSEPLVDRADINRPRAAG 161
           S+P PPP  P  AA   PG RG+        RG   E   ++  E L  R D      A 
Sbjct: 26  SVPPPPP-SPSAAAAGAPGARGSEPRDPGSPRG--SEEPGKKRHERLFHRQD------AL 76

Query: 162 WSCTCASGTDGIRP 203
           W  T ++GT G  P
Sbjct: 77  WISTSSAGTGGAEP 90

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>KLF13_MOUSE (Q9JJZ6) Krueppel-like factor 13 (Transcription factor BTEB3)|
           (Basic transcription element-binding protein 3)
           (BTE-binding protein 3) (RANTES factor of late activated
           T-lymphocytes 1) (RFLAT-1) (Erythroid transcription
           factor FKLF-2)
          Length = 289

 Score = 30.8 bits (68), Expect = 0.94
 Identities = 26/74 (35%), Positives = 30/74 (40%)
 Frame = +3

Query: 9   IPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVDRADINRPRAAGWSCTCASGT 188
           +P  PP  P G  P  PG+ GA        S   SEP  + A    P  AG      SG 
Sbjct: 97  LPPAPPAPPPGPEPASPGQAGAPAA---PPSPAWSEP--EAALEQEPGPAG------SGE 145

Query: 189 DGIRPRREDGRQAA 230
            G+R R   GR  A
Sbjct: 146 PGLRQRGRRGRSRA 159

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>DTD_STRAW (Q82G71) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-)|
          Length = 145

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 20/48 (41%), Positives = 25/48 (52%)
 Frame = +3

Query: 63  RRGARGVWQEAASQQSSEPLVDRADINRPRAAGWSCTCASGTDGIRPR 206
           R+G R  W  AA    +EPLVD   + R RA G   T A+G  G + R
Sbjct: 86  RKGRRPTWNAAAPGDVAEPLVDEV-VARLRALG--ATVATGRFGAQMR 130

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>LIPA3_MOUSE (P60469) Liprin-alpha-3 (Protein tyrosine phosphatase receptor type|
           f polypeptide-interacting protein alpha-3)
           (PTPRF-interacting protein alpha-3)
          Length = 1043

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 6   SIPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSE 116
           ++PS  P DP GA     GR G RG W  A  + S +
Sbjct: 372 TLPSGAPLDPYGAG---SGRAGKRGRWSGAKDESSKD 405

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>DTD_STRCO (Q9K4F6) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-)|
          Length = 141

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = +3

Query: 63  RRGARGVWQEAASQQSSEPLVDRADINRPRAAGWSCTCASGTDGIRPR---REDGRQAAL 233
           R+G R  W  AA    +EPLVD   + + RA G   T A+G  G + R     DG    L
Sbjct: 82  RKGRRPTWNAAAPGDVAEPLVDEV-VAQLRALG--ATVATGRFGAQMRVSLTNDGPFTVL 138

Query: 234 VAV 242
           V V
Sbjct: 139 VEV 141

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>LIPA3_RAT (Q91Z79) Liprin-alpha-3 (Protein tyrosine phosphatase receptor type|
           f polypeptide-interacting protein alpha-3)
           (PTPRF-interacting protein alpha-3)
          Length = 1192

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 6   SIPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSE 116
           ++PS  P DP GA     GR G RG W  A  + S +
Sbjct: 522 TLPSGAPLDPYGAG---SGRAGKRGRWSGAKDESSKD 555

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>CSR2B_HUMAN (Q9H8E8) Cysteine-rich protein 2-binding protein (CSRP2-binding|
           protein) (CRP2BP) (CRP2-binding partner)
          Length = 782

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 18  PPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVDRADIN 143
           PPP   + + P + GR+  RG  Q     +S E   DR DI+
Sbjct: 386 PPPAGSVASGPVVGGRKKVRGPEQIKQEVESEEEKPDRMDID 427

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>CENG1_HUMAN (Q99490) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,|
           ankyrin repeat and pleckstrin homology domains 2)
           (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE)
           (GTP-binding and GTPase activating protein 2) (GGAP2)
          Length = 1192

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
 Frame = +3

Query: 6   SIPSPPPRDPLGAAPQLPGRRGA--------RGVWQEAASQQSSEPLVDRADINRPRAAG 161
           S+P PPP  P  AA   PG RG+        RG   E   ++  E L  R D      A 
Sbjct: 26  SVPPPPP-SPSAAAVGAPGARGSEPRDPGSPRGA--EEPGKKRHERLFHRQD------AL 76

Query: 162 WSCTCASGTDGIRP 203
           W  T ++G  G  P
Sbjct: 77  WISTSSAGAGGAEP 90

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>CENG1_RAT (Q8CGU4) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,|
           ankyrin repeat and pleckstrin homology domains 2)
           (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE)
          Length = 1186

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
 Frame = +3

Query: 6   SIPSPPPRDPLGAAPQLPGRRGA--------RGVWQEAASQQSSEPLVDRADINRPRAAG 161
           S+P PPP  P  AA   PG RG+        RG   E   ++  E L  R D      A 
Sbjct: 26  SVPPPPP-SPSAAAVGAPGARGSEPRDPGSPRGA--EEPGKKRHERLFHRQD------AL 76

Query: 162 WSCTCASGTDGIRP 203
           W  T ++G  G  P
Sbjct: 77  WISTSSAGAGGAEP 90

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>MINC_XANAC (Q8PN47) Probable septum site-determining protein minC|
          Length = 249

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = +3

Query: 6   SIPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVDRADI 140
           S P PPP  P  A P  P  R A G  Q  A +   +   +  D+
Sbjct: 119 SPPPPPPPPPARAEPAPPAARPAPGRMQRTAVRSGQQLYAENCDL 163

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>CTDP1_HUMAN (Q9Y5B0) RNA polymerase II subunit A C-terminal domain phosphatase|
           (EC 3.1.3.16) (TFIIF-associating CTD phosphatase)
          Length = 961

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 20/48 (41%), Positives = 23/48 (47%)
 Frame = +3

Query: 6   SIPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVDRADINRP 149
           S PSPP RDP G   Q PG   + G+ + A     SE    R D  RP
Sbjct: 353 SEPSPPVRDPEGVT-QAPGVEPSNGLEKPARELNGSEAATPR-DSPRP 398

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>XKR6_HUMAN (Q5GH73) XK-related protein 6|
          Length = 641

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 9   IPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVD 128
           IP PP  +P+  AP++PG RG +     A ++Q  +   D
Sbjct: 520 IPLPPDVEPM--APEIPGYRGTQVTPTRAVTEQQEDLTAD 557

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>TEGU_EBV (P03186) Large tegument protein|
          Length = 3149

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +3

Query: 12  PSPPPRDPLGAAPQLPGRRGARG 80
           PS PPR   GAAPQ P R+   G
Sbjct: 397 PSTPPRASSGAAPQTPKRKKGLG 419

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>CRDL1_MOUSE (Q920C1) Chordin-like protein 1 precursor (Neuralin) (Ventroptin)|
          Length = 447

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = +3

Query: 18  PPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVDRADINRPRAAGWSC 170
           PPP    G  P+ PG R  RG   +  SQQ+S  +V +  IN     G  C
Sbjct: 208 PPPNRQAGGLPRFPGSRSHRGAVID--SQQASGTIV-QIVINNKHKHGQVC 255

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>XKR6_RAT (Q5GH57) XK-related protein 6|
          Length = 638

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 9   IPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVD 128
           IP PP  +P+  APQ PG RG +     A ++Q  +   D
Sbjct: 517 IPLPPDVEPM--APQTPGYRGTQVTPTRAVTEQQEDLTAD 554

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>FA8A1_HUMAN (Q9UBU6) Protein FAM8A1 (Autosomal highly conserved protein)|
          Length = 413

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +3

Query: 18  PPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEP 119
           P PRD   A PQ PGR  A G+   AA+ +   P
Sbjct: 37  PCPRDDPQAEPQAPGRPTAPGLAAAAAADKLEPP 70

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>EBNA2_EBVG (Q3KSV2) Epstein-Barr nuclear antigen 2 (EBV nuclear antigen 2)|
           (EBNA-2) (EBNA2)
          Length = 451

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -3

Query: 221 PSIFPPRPNAISPT--STCTGPPRCTRP 144
           P + PPRP   +P   +T T PPR TRP
Sbjct: 159 PLMMPPRPTPPTPLPPATLTVPPRPTRP 186

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>EMAL4_HUMAN (Q9HC35) Echinoderm microtubule-associated protein-like 4 (EMAP-4)|
            (Restrictedly overexpressed proliferation-associated
            protein) (Ropp 120)
          Length = 981

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +3

Query: 3    SSIPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVDRADINRPRAAG 161
            S+ P+PPP  PL    +   R  +     E + +Q+ EP  D ++      +G
Sbjct: 895  SNTPTPPPSQPLNETAEEESRISSSPTLLENSLEQTVEPSEDHSEEESEEGSG 947

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>CMTA2_HUMAN (O94983) Calmodulin-binding transcription activator 2|
          Length = 1202

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +3

Query: 9   IPSPPPRDPLGAAPQLPGRRGARG 80
           IPSPPP  P   AP  P  R  RG
Sbjct: 462 IPSPPPSPPPSPAPLEPSSRVGRG 485

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>EBNA2_EBV (P12978) Epstein-Barr nuclear antigen 2 (EBV nuclear antigen 2)|
           (EBNA-2)
          Length = 487

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -3

Query: 221 PSIFPPRPNAISPT--STCTGPPRCTRP 144
           P + PPRP   +P   +T T PPR TRP
Sbjct: 193 PLMMPPRPTPPTPLPPATLTVPPRPTRP 220

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>POLG_HCVJ8 (P26661) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-)
           (p23); Serine protease/N
          Length = 3032

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -3

Query: 242 DGDEGRLPSIFPPRPNAISPTSTCTGPPRCTRP 144
           DGD       +PPRP  I P  T  GP  C  P
Sbjct: 480 DGDMRPYCWHYPPRPCGIVPARTVCGPVYCFTP 512

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>CDN1C_HUMAN (P49918) Cyclin-dependent kinase inhibitor 1C (Cyclin-dependent|
           kinase inhibitor p57) (p57KIP2)
          Length = 316

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +3

Query: 12  PSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVDR--ADINRPRAAGWSCTCASG 185
           P+P P     AAPQ    +GA         Q+  EPL D+  + I+   AAG +   A+G
Sbjct: 208 PAPAPAPAPDAAPQESAEQGAN------QGQRGQEPLADQLHSGISGRPAAGTAAASANG 261

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>MINC_XANCP (Q8PBJ4) Probable septum site-determining protein minC|
          Length = 249

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = +3

Query: 6   SIPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVDRADI 140
           S P PPP  P  A P  P  R A G  Q  A +   +   +  D+
Sbjct: 119 SPPPPPPPPPARAEPAAPVARPAPGRMQRNAVRSGQQLYAENCDL 163

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>ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 protein homolog)|
          Length = 1285

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
 Frame = -3

Query: 221  PSIFPPRPNAISPTSTCTGPPRCTRPVYISS------IHQRFRALLACCFLPHTARTSPA 60
            P ++ P    I   +    PP   +P  +SS       H++  A+ AC  LP+   TSP+
Sbjct: 1036 PHVYSP---VIQGNARMMAPPAHAQPGLVSSSAAQFGAHEQTHAMYACPKLPYNKETSPS 1092

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>DPOL_ADEG1 (Q64751) DNA polymerase (EC 2.7.7.7)|
          Length = 1121

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 18  PPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVD 128
           PPP + L   P +  RRG R VW   A       ++D
Sbjct: 568 PPPPEMLDPLPPICSRRGGRLVWTNEALYDEVVTVID 604

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>EGLN2_HUMAN (Q96KS0) Egl nine homolog 2 (EC 1.14.11.-) (Hypoxia-inducible|
           factor prolyl hydroxylase 1) (HIF-prolyl hydroxylase 1)
           (HIF-PH1) (HPH-3) (Prolyl hydroxylase domain-containing
           protein 1) (PHD1) (Estrogen-induced tag 6)
          Length = 407

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +3

Query: 39  GAAPQLPGRRGARGVWQEAASQQSSEPLVDRADINRPRAAGWSCTCASGT 188
           GA P+ P R+ A       A   S  P   + +    R  G SC+C+SG+
Sbjct: 111 GARPEAPKRKWAEDGGD--APSPSKRPWARQENQEAEREGGMSCSCSSGS 158

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>Y1673_SYNY3 (P74261) Hypothetical tRNA/rRNA methyltransferase slr1673 (EC|
           2.1.1.-)
          Length = 274

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -1

Query: 217 PSSRLGRMPSVPLAHVQDHPAARGLFISARSTKGSELCWLAASCHTPRAPR 65
           P +RLG +    L  +QD P   G  +   +  G E  WL A C  P +P+
Sbjct: 117 PHARLGLV----LERLQD-PGNLGTILRTAAATGVEGIWLTADCVDPTSPK 162

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>ATX2_HUMAN (Q99700) Ataxin-2 (Spinocerebellar ataxia type 2 protein)|
            (Trinucleotide repeat-containing gene 13 protein)
          Length = 1312

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
 Frame = -3

Query: 221  PSIFPPRPNAISPTSTCTGPPRCTRPVYISS------IHQRFRALLACCFLPHTARTSPA 60
            P ++ P    I   +    PP   +P  +SS       H++  A+ AC  LP+   TSP+
Sbjct: 1062 PHVYSP---VIQGNARMMAPPTHAQPGLVSSSATQYGAHEQTHAMYACPKLPYNKETSPS 1118

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>PGBM_MOUSE (Q05793) Basement membrane-specific heparan sulfate proteoglycan core|
            protein precursor (HSPG) (Perlecan) (PLC)
          Length = 3707

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 126  DRADINRPRAAGWSCTCASGTDGIR 200
            D   +NRP   G++C C  G  G+R
Sbjct: 3213 DATCVNRPDGRGYTCRCHLGRSGVR 3237

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>SFTA2_HUMAN (Q8IWL1) Pulmonary surfactant-associated protein A2 precursor|
           (SP-A2) (SP-A) (PSP-A) (PSPA) (Alveolar proteinosis
           protein) (35 kDa pulmonary surfactant-associated
           protein)
          Length = 248

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 12  PSPPPRDPLGAAPQLPGRRGARG 80
           P PP  + L  AP +PG RG +G
Sbjct: 67  PCPPGNNGLPGAPGVPGERGEKG 89

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>POLG_HCVVA (Q9QAX1) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-)
           (p23); Serine protease/N
          Length = 3032

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 212 FPPRPNAISPTSTCTGPPRCTRP 144
           +PPRP  I P  T  GP  C  P
Sbjct: 490 YPPRPCGIVPAQTVCGPVYCFTP 512

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>ZN553_MOUSE (Q3US17) Zinc finger protein 553|
          Length = 591

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 9/46 (19%)
 Frame = +3

Query: 9   IPSPPPRDPLGAAPQLPGRR---------GARGVWQEAASQQSSEP 119
           IPSPPP  PLG +P L  R          G  G+  E    Q+ EP
Sbjct: 369 IPSPPP-PPLGTSPSLTPRSPSHSSDGPFGLPGLEPEPGGPQAGEP 413

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>ZN553_HUMAN (Q96MX3) Zinc finger protein 553|
          Length = 618

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 8/45 (17%)
 Frame = +3

Query: 9   IPSPPPRDPLGAAPQLPGRR--------GARGVWQEAASQQSSEP 119
           IPSPPP  PLG +P L  R         G  G+  E    Q+ EP
Sbjct: 398 IPSPPP-PPLGTSPPLTPRSPSHSGEPFGLPGLEPEPGGPQAGEP 441

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>RPP38_HUMAN (P78345) Ribonuclease P protein subunit p38 (EC 3.1.26.5) (RNaseP|
           protein p38)
          Length = 283

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +3

Query: 36  LGAAPQLPGRRGARGVWQEAASQQSSEPLVDRADINRPRAAGWS 167
           + AAPQ PGR           S + + PLV +  +N P    WS
Sbjct: 1   MAAAPQAPGR----------GSLRKTRPLVVKTSLNNPYIIRWS 34

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>CPSF6_MOUSE (Q6NVF9) Cleavage and polyadenylation specificity factor 6|
          Length = 551

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 221 PSIFPPRPNAISPTSTCTGPP 159
           P+ FPP  N+  PTS   GPP
Sbjct: 359 PAFFPPPTNSGMPTSDSRGPP 379

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>CPSF6_HUMAN (Q16630) Cleavage and polyadenylation specificity factor 6|
           (Cleavage and polyadenylation specificity factor 68 kDa
           subunit) (CPSF 68 kDa subunit) (Pre-mRNA cleavage factor
           Im 68-kDa subunit) (Protein HPBRII-4/7)
          Length = 551

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 221 PSIFPPRPNAISPTSTCTGPP 159
           P+ FPP  N+  PTS   GPP
Sbjct: 359 PAFFPPPTNSGMPTSDSRGPP 379

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>VGP3_EBV (P03200) Envelope glycoprotein GP340/GP220 (Membrane antigen) (MA)|
          Length = 907

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -3

Query: 221 PSIFPPRPNAISPTSTCTGP-PRCTRP 144
           P++  P PNA SPT   T P P  T P
Sbjct: 525 PAVTTPTPNATSPTPAVTTPTPNATSP 551

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>PGBM_HUMAN (P98160) Basement membrane-specific heparan sulfate proteoglycan core|
            protein precursor (HSPG) (Perlecan) (PLC)
          Length = 4391

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 126  DRADINRPRAAGWSCTCASGTDGIR 200
            D   +NRP   G++C C  G  G+R
Sbjct: 3896 DATCVNRPDGRGYTCRCHLGRSGLR 3920

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>CPSF6_PONPY (Q5NVH8) Cleavage and polyadenylation specificity factor 6|
          Length = 552

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 221 PSIFPPRPNAISPTSTCTGPP 159
           P+ FPP  N+  PTS   GPP
Sbjct: 359 PAFFPPPTNSGMPTSDSRGPP 379


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,079,090
Number of Sequences: 219361
Number of extensions: 785350
Number of successful extensions: 4005
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 3409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3984
length of database: 80,573,946
effective HSP length: 67
effective length of database: 65,876,759
effective search space used: 1581042216
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result