ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl43e04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 96 7e-17
2dbj|AP003561.2| Oryza sativa (japonica cultivar-group) genomic D... 96 7e-17
3dbj|AK119636.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 7e-17
4dbj|AK100713.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 7e-17
5ref|XM_463541.1| Oryza sativa (japonica cultivar-group), predic... 92 1e-15
6gb|AY596586.1| Saccharum officinarum clone SCCCRZ2002H08, comple... 74 3e-10
7gb|AC090018.12| Homo sapiens 3 BAC RP11-1D19 (Roswell Park Cance... 48 0.015
8emb|AJ338620.1|HSA338620 Homo sapiens genomic sequence surroundi... 48 0.015
9emb|AJ340775.1|HSA340775 Homo sapiens genomic sequence surroundi... 48 0.015
10emb|AJ341443.1|HSA341443 Homo sapiens genomic sequence surroundi... 48 0.015
11emb|AJ326070.1|HSA326070 Homo sapiens genomic sequence surroundi... 48 0.015
12ref|NM_194513.1| Oryza sativa (japonica cultivar-group) putative... 42 0.91
13gb|AC069324.3| Oryza sativa (japonica cultivar-group) chromosome... 42 0.91
14gb|AC010295.7| Homo sapiens chromosome 5 clone CTB-143H13, compl... 42 0.91
15gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 42 0.91
16emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete ... 42 0.91
17dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.91
18emb|X65556.1|SLGLYUB S.lividans tRNA-GlyU beta gene 42 0.91
19emb|AJ333186.1|HSA333186 Homo sapiens genomic sequence surroundi... 42 0.91
20dbj|AK100339.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.91
21dbj|AK071821.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.91
22gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 0.91
23ref|XM_528529.1| PREDICTED: Pan troglodytes similar to doublesex... 40 3.6
24ref|XM_464814.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.6
25ref|XM_808184.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 3.6
26ref|XM_811489.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 3.6
27gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 3.6
28gb|AC135614.15| Pan troglodytes clone rp43-3m22, complete sequence 40 3.6
29gb|AC048352.18| Homo sapiens 12 BAC RP11-871F6 (Roswell Park Can... 40 3.6
30dbj|AB214954.1| Streptomyces griseus griE, griF genes for copper... 40 3.6
31dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
32dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
33gb|AC026305.20| Homo sapiens 3 BAC RP11-91A15 (Roswell Park Canc... 40 3.6
34ref|XM_221125.3| PREDICTED: Rattus norvegicus similar to tripart... 40 3.6
35dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 3.6
36dbj|AP006062.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
37dbj|AP005563.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
38dbj|AP005511.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
39dbj|AP005614.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
40emb|AJ341642.1|HSA341642 Homo sapiens genomic sequence surroundi... 40 3.6
41emb|AJ340862.1|HSA340862 Homo sapiens genomic sequence surroundi... 40 3.6
42dbj|AK062216.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.6
43emb|AL732345.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 3.6
44emb|AL732352.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 3.6
45gb|M30609.1|MXARTMSD M.xanthus reverse transcriptase (Mx65-RT) g... 40 3.6
46emb|AL607108.17| Mouse DNA sequence from clone RP23-42F6 on chro... 40 3.6 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 95.6 bits (48), Expect = 7e-17
 Identities = 80/90 (88%), Gaps = 3/90 (3%)
 Strand = Plus / Minus

                                                                            
Query: 188      tgatggcattcggccgaggcgggaagatggacggcaggcggccctcgtcgccgtcttcgt 247
                |||||||||| |||||||||  |||||||||||||||||||   ||||||||||| ||||
Sbjct: 38384272 tgatggcatttggccgaggctcgaagatggacggcaggcgg---tcgtcgccgtcgtcgt 38384216

                                              
Query: 248      cgttgtgcacgacgaccaccgtcgtggtgt 277
                || | |||||||||||||||||||| ||||
Sbjct: 38384215 cgctctgcacgacgaccaccgtcgtcgtgt 38384186
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>dbj|AP003561.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1065E10
          Length = 183580

 Score = 95.6 bits (48), Expect = 7e-17
 Identities = 80/90 (88%), Gaps = 3/90 (3%)
 Strand = Plus / Minus

                                                                          
Query: 188    tgatggcattcggccgaggcgggaagatggacggcaggcggccctcgtcgccgtcttcgt 247
              |||||||||| |||||||||  |||||||||||||||||||   ||||||||||| ||||
Sbjct: 145097 tgatggcatttggccgaggctcgaagatggacggcaggcgg---tcgtcgccgtcgtcgt 145041

                                            
Query: 248    cgttgtgcacgacgaccaccgtcgtggtgt 277
              || | |||||||||||||||||||| ||||
Sbjct: 145040 cgctctgcacgacgaccaccgtcgtcgtgt 145011
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>dbj|AK119636.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-F03, full
           insert sequence
          Length = 2826

 Score = 95.6 bits (48), Expect = 7e-17
 Identities = 80/90 (88%), Gaps = 3/90 (3%)
 Strand = Plus / Plus

                                                                       
Query: 188 tgatggcattcggccgaggcgggaagatggacggcaggcggccctcgtcgccgtcttcgt 247
           |||||||||| |||||||||  |||||||||||||||||||   ||||||||||| ||||
Sbjct: 137 tgatggcatttggccgaggctcgaagatggacggcaggcgg---tcgtcgccgtcgtcgt 193

                                         
Query: 248 cgttgtgcacgacgaccaccgtcgtggtgt 277
           || | |||||||||||||||||||| ||||
Sbjct: 194 cgctctgcacgacgaccaccgtcgtcgtgt 223
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>dbj|AK100713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023115H24, full
           insert sequence
          Length = 2988

 Score = 95.6 bits (48), Expect = 7e-17
 Identities = 80/90 (88%), Gaps = 3/90 (3%)
 Strand = Plus / Plus

                                                                       
Query: 188 tgatggcattcggccgaggcgggaagatggacggcaggcggccctcgtcgccgtcttcgt 247
           |||||||||| |||||||||  |||||||||||||||||||   ||||||||||| ||||
Sbjct: 303 tgatggcatttggccgaggctcgaagatggacggcaggcgg---tcgtcgccgtcgtcgt 359

                                         
Query: 248 cgttgtgcacgacgaccaccgtcgtggtgt 277
           || | |||||||||||||||||||| ||||
Sbjct: 360 cgctctgcacgacgaccaccgtcgtcgtgt 389
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>ref|XM_463541.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2421

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 78/88 (88%), Gaps = 3/88 (3%)
 Strand = Plus / Plus

                                                                       
Query: 190 atggcattcggccgaggcgggaagatggacggcaggcggccctcgtcgccgtcttcgtcg 249
           |||||||| |||||||||  |||||||||||||||||||   ||||||||||| ||||||
Sbjct: 1   atggcatttggccgaggctcgaagatggacggcaggcgg---tcgtcgccgtcgtcgtcg 57

                                       
Query: 250 ttgtgcacgacgaccaccgtcgtggtgt 277
            | |||||||||||||||||||| ||||
Sbjct: 58  ctctgcacgacgaccaccgtcgtcgtgt 85
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>gb|AY596586.1| Saccharum officinarum clone SCCCRZ2002H08, complete sequence
          Length = 2841

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 75/87 (86%), Gaps = 3/87 (3%)
 Strand = Plus / Plus

                                                                       
Query: 186 actgatggcattcggccgaggcgggaagatggacggcaggcggccctcgtcgccgtcttc 245
           |||||||||||| |||||||| ||||||||||||||| | ||||   ||||| |||| ||
Sbjct: 212 actgatggcatttggccgaggtgggaagatggacggccgccggc---cgtcgtcgtcgtc 268

                                      
Query: 246 gtcgttgtgcacgacgaccaccgtcgt 272
           |||||| |||||||| ||||| |||||
Sbjct: 269 gtcgttctgcacgaccaccacggtcgt 295
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>gb|AC090018.12| Homo sapiens 3 BAC RP11-1D19 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 205638

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 56     ccccggccggcgaggtgcgcgcgg 79
              ||||||||||||||||||||||||
Sbjct: 108108 ccccggccggcgaggtgcgcgcgg 108085
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>emb|AJ338620.1|HSA338620 Homo sapiens genomic sequence surrounding NotI site, clone
          NB1-803R
          Length = 460

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 56 ccccggccggcgaggtgcgcgcgg 79
          ||||||||||||||||||||||||
Sbjct: 45 ccccggccggcgaggtgcgcgcgg 68
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>emb|AJ340775.1|HSA340775 Homo sapiens genomic sequence surrounding NotI site, clone
          NL1-GA3RS
          Length = 667

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 56 ccccggccggcgaggtgcgcgcgg 79
          ||||||||||||||||||||||||
Sbjct: 45 ccccggccggcgaggtgcgcgcgg 68
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>emb|AJ341443.1|HSA341443 Homo sapiens genomic sequence surrounding NotI site, clone
          NL1-FL23RS
          Length = 557

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 56 ccccggccggcgaggtgcgcgcgg 79
          ||||||||||||||||||||||||
Sbjct: 45 ccccggccggcgaggtgcgcgcgg 68
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>emb|AJ326070.1|HSA326070 Homo sapiens genomic sequence surrounding NotI site, clone
          NR1-194R
          Length = 724

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 56 ccccggccggcgaggtgcgcgcgg 79
          ||||||||||||||||||||||||
Sbjct: 45 ccccggccggcgaggtgcgcgcgg 68
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>ref|NM_194513.1| Oryza sativa (japonica cultivar-group) putative protein kinase
           (OSJNBa0071K19.13), mRNA
          Length = 1707

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 233 cgtcgccgtcttcgtcgttgt 253
           |||||||||||||||||||||
Sbjct: 59  cgtcgccgtcttcgtcgttgt 79
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>gb|AC069324.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0071K19,
              complete sequence
          Length = 174752

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 233    cgtcgccgtcttcgtcgttgt 253
              |||||||||||||||||||||
Sbjct: 118443 cgtcgccgtcttcgtcgttgt 118423
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>gb|AC010295.7| Homo sapiens chromosome 5 clone CTB-143H13, complete sequence
          Length = 108051

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 49   cccagctccccggccggcgag 69
            |||||||||||||||||||||
Sbjct: 7532 cccagctccccggccggcgag 7512
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>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
              Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 233    cgtcgccgtcttcgtcgttgt 253
              |||||||||||||||||||||
Sbjct: 353385 cgtcgccgtcttcgtcgttgt 353365
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>emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete genome; segment 15/29
          Length = 303550

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 226    cggccctcgtcgccgtcttcgtcgt 250
              |||||||||||| ||||||||||||
Sbjct: 241542 cggccctcgtcggcgtcttcgtcgt 241518
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10,
              complete sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 233    cgtcgccgtcttcgtcgttgt 253
              |||||||||||||||||||||
Sbjct: 353385 cgtcgccgtcttcgtcgttgt 353365
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>emb|X65556.1|SLGLYUB S.lividans tRNA-GlyU beta gene
          Length = 2576

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 226  cggccctcgtcgccgtcttcgtcgt 250
            |||||||||||| ||||||||||||
Sbjct: 1813 cggccctcgtcggcgtcttcgtcgt 1837
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>emb|AJ333186.1|HSA333186 Homo sapiens genomic sequence surrounding NotI site, clone
          NR1-TG13RS
          Length = 600

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 55 tccccggccggcgaggtgcgcgcgg 79
          |||||||||||||||| ||||||||
Sbjct: 45 tccccggccggcgaggggcgcgcgg 69
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>dbj|AK100339.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081I19, full
           insert sequence
          Length = 2160

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 233 cgtcgccgtcttcgtcgttgt 253
           |||||||||||||||||||||
Sbjct: 280 cgtcgccgtcttcgtcgttgt 300
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>dbj|AK071821.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114J15, full
           insert sequence
          Length = 1977

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 233 cgtcgccgtcttcgtcgttgt 253
           |||||||||||||||||||||
Sbjct: 280 cgtcgccgtcttcgtcgttgt 300
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 233    cgtcgccgtcttcgtcgttgt 253
              |||||||||||||||||||||
Sbjct: 353382 cgtcgccgtcttcgtcgttgt 353362
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>ref|XM_528529.1| PREDICTED: Pan troglodytes similar to doublesex and mab-3 related
           transcription factor 2 (LOC473159), mRNA
          Length = 2433

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 231 ctcgtcgccgtcttcgtcgt 250
           ||||||||||||||||||||
Sbjct: 468 ctcgtcgccgtcttcgtcgt 449
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>ref|XM_464814.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 609

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 230 cctcgtcgccgtcttcgtcgttgtgcac 257
           |||||||| |||||||||||| ||||||
Sbjct: 99  cctcgtcgtcgtcttcgtcgtcgtgcac 126
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>ref|XM_808184.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053506367.174) partial mRNA
          Length = 408

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 244 tcgtcgttgtgcacgacgac 263
           ||||||||||||||||||||
Sbjct: 369 tcgtcgttgtgcacgacgac 350
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>ref|XM_811489.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053506629.90) partial mRNA
          Length = 408

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 244 tcgtcgttgtgcacgacgac 263
           ||||||||||||||||||||
Sbjct: 369 tcgtcgttgtgcacgacgac 350
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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 230     cctcgtcgccgtcttcgtcg 249
               ||||||||||||||||||||
Sbjct: 2397334 cctcgtcgccgtcttcgtcg 2397353
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>gb|AC135614.15| Pan troglodytes clone rp43-3m22, complete sequence
          Length = 118935

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 78    ggtgtgtggcaggaagcagcaagc 101
             |||| |||||||||||||||||||
Sbjct: 48288 ggtgggtggcaggaagcagcaagc 48311
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>gb|AC048352.18| Homo sapiens 12 BAC RP11-871F6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 216792

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    agcagcaagccagcaaagct 111
             ||||||||||||||||||||
Sbjct: 16209 agcagcaagccagcaaagct 16228
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>dbj|AB214954.1| Streptomyces griseus griE, griF genes for copper chaperon,
           ortho-aminophenol oxidase, complete cds
          Length = 1530

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 145 ggccgcgtgcagcggggtgg 164
           ||||||||||||||||||||
Sbjct: 367 ggccgcgtgcagcggggtgg 348
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 220     ggcaggcggccctcgtcgcc 239
               ||||||||||||||||||||
Sbjct: 1787592 ggcaggcggccctcgtcgcc 1787573
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 230     cctcgtcgccgtcttcgtcgttgtgcac 257
               |||||||| |||||||||||| ||||||
Sbjct: 8362905 cctcgtcgtcgtcttcgtcgtcgtgcac 8362878
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>gb|AC026305.20| Homo sapiens 3 BAC RP11-91A15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 104150

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 168   tgtacatgtgctagtgggac 187
             ||||||||||||||||||||
Sbjct: 37641 tgtacatgtgctagtgggac 37622
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>ref|XM_221125.3| PREDICTED: Rattus norvegicus similar to tripartite
          motif-containing 65 (LOC303684), mRNA
          Length = 1384

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 39 ggagccgcgccccagctccc 58
          ||||||||||||||||||||
Sbjct: 28 ggagccgcgccccagctccc 47
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 62     ccggcgaggtgcgcgcggtg 81
              ||||||||||||||||||||
Sbjct: 157990 ccggcgaggtgcgcgcggtg 157971
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>dbj|AP006062.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0415D04
          Length = 176627

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 220    ggcaggcggccctcgtcgcc 239
              ||||||||||||||||||||
Sbjct: 174164 ggcaggcggccctcgtcgcc 174145
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>dbj|AP005563.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1227_D07
          Length = 118358

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 220   ggcaggcggccctcgtcgcc 239
             ||||||||||||||||||||
Sbjct: 26254 ggcaggcggccctcgtcgcc 26235
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>dbj|AP005511.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0011N12
          Length = 158586

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 230   cctcgtcgccgtcttcgtcgttgtgcac 257
             |||||||| |||||||||||| ||||||
Sbjct: 15755 cctcgtcgtcgtcttcgtcgtcgtgcac 15728
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>dbj|AP005614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0090H18
          Length = 174842

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 230    cctcgtcgccgtcttcgtcgttgtgcac 257
              |||||||| |||||||||||| ||||||
Sbjct: 139576 cctcgtcgtcgtcttcgtcgtcgtgcac 139549
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>emb|AJ341642.1|HSA341642 Homo sapiens genomic sequence surrounding NotI site, clone
          NR1-CF19RS
          Length = 674

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 56 ccccggccggcgaggtgcgcgcgg 79
          |||||| |||||||||||||||||
Sbjct: 45 ccccggacggcgaggtgcgcgcgg 68
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>emb|AJ340862.1|HSA340862 Homo sapiens genomic sequence surrounding NotI site, clone
          NR1-ED2RS
          Length = 586

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 60 ggccggcgaggtgcgcgcgg 79
          ||||||||||||||||||||
Sbjct: 49 ggccggcgaggtgcgcgcgg 68
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>dbj|AK062216.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-A10, full
           insert sequence
          Length = 1055

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 230 cctcgtcgccgtcttcgtcg 249
           ||||||||||||||||||||
Sbjct: 64  cctcgtcgccgtcttcgtcg 83
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>emb|AL732345.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F12, complete
            sequence
          Length = 84361

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 59   cggccggcgaggtgcgcgcg 78
            ||||||||||||||||||||
Sbjct: 9240 cggccggcgaggtgcgcgcg 9259
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>emb|AL732352.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0124B04, complete
              sequence
          Length = 115564

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 59     cggccggcgaggtgcgcgcg 78
              ||||||||||||||||||||
Sbjct: 104187 cggccggcgaggtgcgcgcg 104206
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>gb|M30609.1|MXARTMSD M.xanthus reverse transcriptase (Mx65-RT) gene, multicopy
            single-stranded DNA (msDNA) and RNA (msdRNA) genes,
            complete cds
          Length = 1640

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 60   ggccggcgaggtgcgcgcggtgtg 83
            ||||| ||||||||||||||||||
Sbjct: 1485 ggccgtcgaggtgcgcgcggtgtg 1462
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>emb|AL607108.17| Mouse DNA sequence from clone RP23-42F6 on chromosome 11, complete
              sequence
          Length = 202842

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 39     ggagccgcgccccagctccc 58
              ||||||||||||||||||||
Sbjct: 147553 ggagccgcgccccagctccc 147534


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,840,147
Number of Sequences: 3902068
Number of extensions: 1840147
Number of successful extensions: 39237
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38910
Number of HSP's gapped (non-prelim): 322
length of query: 277
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 255
effective length of database: 17,147,199,772
effective search space: 4372535941860
effective search space used: 4372535941860
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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