Clone Name | bastl43d12 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 73.8 bits (37), Expect = 3e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 156 cagcacgtcgtcaccgcgtccgccgccgacgtcgccatcctgatccacgacgccgccgcg 215 ||||| ||||||||||| |||||||||||||| |||||||| ||||| |||||||| ||| Sbjct: 3065728 cagcatgtcgtcaccgcatccgccgccgacgtggccatcctcatccatgacgccgctgcg 3065787 Query: 216 g 216 | Sbjct: 3065788 g 3065788 Score = 60.0 bits (30), Expect = 4e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 64 ccatgaaaggccgcgcggttaagcttcgggaggcgcacaaggcgggctcg 113 |||||||||| |||||||| ||||| || |||||||||||||| |||||| Sbjct: 3065642 ccatgaaagggcgcgcggtgaagctccgagaggcgcacaaggccggctcg 3065691
>dbj|AP005560.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1178_D01 Length = 121768 Score = 73.8 bits (37), Expect = 3e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 156 cagcacgtcgtcaccgcgtccgccgccgacgtcgccatcctgatccacgacgccgccgcg 215 ||||| ||||||||||| |||||||||||||| |||||||| ||||| |||||||| ||| Sbjct: 85694 cagcatgtcgtcaccgcatccgccgccgacgtggccatcctcatccatgacgccgctgcg 85753 Query: 216 g 216 | Sbjct: 85754 g 85754 Score = 60.0 bits (30), Expect = 4e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 64 ccatgaaaggccgcgcggttaagcttcgggaggcgcacaaggcgggctcg 113 |||||||||| |||||||| ||||| || |||||||||||||| |||||| Sbjct: 85608 ccatgaaagggcgcgcggtgaagctccgagaggcgcacaaggccggctcg 85657
>dbj|AK099930.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118L18, full insert sequence Length = 3398 Score = 73.8 bits (37), Expect = 3e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 156 cagcacgtcgtcaccgcgtccgccgccgacgtcgccatcctgatccacgacgccgccgcg 215 ||||| ||||||||||| |||||||||||||| |||||||| ||||| |||||||| ||| Sbjct: 2402 cagcatgtcgtcaccgcatccgccgccgacgtggccatcctcatccatgacgccgctgcg 2343 Query: 216 g 216 | Sbjct: 2342 g 2342 Score = 60.0 bits (30), Expect = 4e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 64 ccatgaaaggccgcgcggttaagcttcgggaggcgcacaaggcgggctcg 113 |||||||||| |||||||| ||||| || |||||||||||||| |||||| Sbjct: 2488 ccatgaaagggcgcgcggtgaagctccgagaggcgcacaaggccggctcg 2439
>ref|XM_359978.1| Magnaporthe grisea 70-15 hypothetical protein (MG05353.4) partial mRNA Length = 1587 Score = 46.1 bits (23), Expect = 0.059 Identities = 29/31 (93%) Strand = Plus / Plus Query: 161 cgtcgtcaccgcgtccgccgccgacgtcgcc 191 |||||||||| ||||||||||||||| |||| Sbjct: 993 cgtcgtcacctcgtccgccgccgacgacgcc 1023
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 46.1 bits (23), Expect = 0.059 Identities = 23/23 (100%) Strand = Plus / Plus Query: 169 ccgcgtccgccgccgacgtcgcc 191 ||||||||||||||||||||||| Sbjct: 3002477 ccgcgtccgccgccgacgtcgcc 3002499 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Plus Query: 172 cgtccgccgccgacgtcgcca 192 ||||||||||||||||||||| Sbjct: 4873585 cgtccgccgccgacgtcgcca 4873605
>ref|NM_196907.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0071K18.4), mRNA Length = 783 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 gatccacgacgccgccgcgg 216 |||||||||||||||||||| Sbjct: 413 gatccacgacgccgccgcgg 432
>gb|AC112160.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1579_G03, complete sequence Length = 121466 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 tccgccgccgacgtcgccat 193 |||||||||||||||||||| Sbjct: 39347 tccgccgccgacgtcgccat 39328
>gb|AC136787.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0052B22, complete sequence Length = 156725 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 ccgccgccgacgtcgccatc 194 |||||||||||||||||||| Sbjct: 101834 ccgccgccgacgtcgccatc 101853
>gb|AY258009.2| Streptomyces clavuligerus clavulanic acid biosynthetic gene cluster, partial sequence Length = 13901 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 cgtcaccgcgtccgccgccg 183 |||||||||||||||||||| Sbjct: 6647 cgtcaccgcgtccgccgccg 6666
>gb|AC027038.12| Oryza sativa chromosome 10 BAC OSJNBa0071K18 genomic sequence, complete sequence Length = 149758 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 gatccacgacgccgccgcgg 216 |||||||||||||||||||| Sbjct: 42115 gatccacgacgccgccgcgg 42134
>emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genome; segment 15/16 Length = 345012 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 169 ccgcgtccgccgccgacgtcgcca 192 ||||| |||||||||||||||||| Sbjct: 173940 ccgcggccgccgccgacgtcgcca 173963
>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29 Length = 248550 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 ggccgtcgccacgatccggc 267 |||||||||||||||||||| Sbjct: 90760 ggccgtcgccacgatccggc 90779
>gb|AY034175.1| Streptomyces clavuligerus clavulanic acid gene cluster, partial sequence Length = 12162 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 cgtcaccgcgtccgccgccg 183 |||||||||||||||||||| Sbjct: 8154 cgtcaccgcgtccgccgccg 8173
>dbj|AB125331.1| Dicologlossa cuneata mitochondrial cytb gene for cytochrome b, complete cds Length = 1141 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 cgccgacgtcgccatcctga 198 |||||||||||||||||||| Sbjct: 987 cgccgacgtcgccatcctga 1006
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 gtccgccgccgacgtcgcca 192 |||||||||||||||||||| Sbjct: 2558529 gtccgccgccgacgtcgcca 2558510
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 169 ccgcgtccgccgccgacgtcgcca 192 ||||| |||||||||||||||||| Sbjct: 1228379 ccgcgaccgccgccgacgtcgcca 1228356
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 gtccgccgccgacgtcgcca 192 |||||||||||||||||||| Sbjct: 4041971 gtccgccgccgacgtcgcca 4041952
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 ccgccgccgacgtcgccatc 194 |||||||||||||||||||| Sbjct: 16786272 ccgccgccgacgtcgccatc 16786291
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 gatccacgacgccgccgcgg 216 |||||||||||||||||||| Sbjct: 16618127 gatccacgacgccgccgcgg 16618108
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 ccgccgccgacgtcgccatc 194 |||||||||||||||||||| Sbjct: 5117204 ccgccgccgacgtcgccatc 5117223
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 tccgccgccgacgtcgccat 193 |||||||||||||||||||| Sbjct: 24153109 tccgccgccgacgtcgccat 24153090
>dbj|AP003946.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1147_D11 Length = 138444 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 ccgccgccgacgtcgccatc 194 |||||||||||||||||||| Sbjct: 76242 ccgccgccgacgtcgccatc 76261
>dbj|AP006056.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1172G12 Length = 171974 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 ccgccgccgacgtcgccatc 194 |||||||||||||||||||| Sbjct: 159318 ccgccgccgacgtcgccatc 159337
>dbj|AK109163.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-G10, full insert sequence Length = 769 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 ccgccgccgacgtcgccatc 194 |||||||||||||||||||| Sbjct: 223 ccgccgccgacgtcgccatc 242
>dbj|AK068341.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149K10, full insert sequence Length = 2132 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 ccgccgccgacgtcgccatc 194 |||||||||||||||||||| Sbjct: 38 ccgccgccgacgtcgccatc 57
>gb|AY105796.1| Zea mays PCO081368 mRNA sequence Length = 544 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 96 gcgcacaaggcgggctcgggctcc 119 ||||||||||||| |||||||||| Sbjct: 86 gcgcacaaggcggcctcgggctcc 109
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 gatccacgacgccgccgcgg 216 |||||||||||||||||||| Sbjct: 16626368 gatccacgacgccgccgcgg 16626349
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 ccgccgccgacgtcgccatc 194 |||||||||||||||||||| Sbjct: 16880042 ccgccgccgacgtcgccatc 16880061
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 gtccgccgccgacgtcgcca 192 |||||||||||||||||||| Sbjct: 4041958 gtccgccgccgacgtcgcca 4041939
>emb|AL731882.2|CNS08C8M Oryza sativa chromosome 12, . BAC OSJNBb0028H07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132682 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 gtccgccgccgacgtcgcca 192 |||||||||||||||||||| Sbjct: 78392 gtccgccgccgacgtcgcca 78373 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,537,512 Number of Sequences: 3902068 Number of extensions: 1537512 Number of successful extensions: 37661 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36790 Number of HSP's gapped (non-prelim): 871 length of query: 280 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 258 effective length of database: 17,147,199,772 effective search space: 4423977541176 effective search space used: 4423977541176 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)