>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 93.7 bits (47), Expect = 2e-16
 Identities = 68/75 (90%)
 Strand = Plus / Minus

                                                                           
Query: 175     aatggaggtgccgccggagatgctcgacaccctggcgggctggttcgcgcagaccctctc 234
               |||||||||| ||||||||| ||||||||||||| |||| |||||||||||| | |||||
Sbjct: 7481689 aatggaggtggcgccggagacgctcgacaccctgtcggggtggttcgcgcagtcgctctc 7481630

                              
Query: 235     ccctgacgccgccgc 249
               ||| |||||||||||
Sbjct: 7481629 cccggacgccgccgc 7481615

>dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0708G02
          Length = 168976

 Score = 93.7 bits (47), Expect = 2e-16
 Identities = 68/75 (90%)
 Strand = Plus / Minus

                                                                         
Query: 175   aatggaggtgccgccggagatgctcgacaccctggcgggctggttcgcgcagaccctctc 234
             |||||||||| ||||||||| ||||||||||||| |||| |||||||||||| | |||||
Sbjct: 30481 aatggaggtggcgccggagacgctcgacaccctgtcggggtggttcgcgcagtcgctctc 30422

                            
Query: 235   ccctgacgccgccgc 249
             ||| |||||||||||
Sbjct: 30421 cccggacgccgccgc 30407

>dbj|AK064696.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-F11, full
           insert sequence
          Length = 1754

 Score = 93.7 bits (47), Expect = 2e-16
 Identities = 68/75 (90%)
 Strand = Plus / Plus

                                                                       
Query: 175 aatggaggtgccgccggagatgctcgacaccctggcgggctggttcgcgcagaccctctc 234
           |||||||||| ||||||||| ||||||||||||| |||| |||||||||||| | |||||
Sbjct: 126 aatggaggtggcgccggagacgctcgacaccctgtcggggtggttcgcgcagtcgctctc 185

                          
Query: 235 ccctgacgccgccgc 249
           ||| |||||||||||
Sbjct: 186 cccggacgccgccgc 200

>ref|NM_188661.1| Oryza sativa (japonica cultivar-group), Ozsa8264 predicted mRNA
          Length = 2952

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 67/74 (90%)
 Strand = Plus / Plus

                                                                       
Query: 176 atggaggtgccgccggagatgctcgacaccctggcgggctggttcgcgcagaccctctcc 235
           ||||||||| ||||||||| ||||||||||||| |||| |||||||||||| | ||||||
Sbjct: 1   atggaggtggcgccggagacgctcgacaccctgtcggggtggttcgcgcagtcgctctcc 60

                         
Query: 236 cctgacgccgccgc 249
           || |||||||||||
Sbjct: 61  ccggacgccgccgc 74

>gb|AC158537.2| Mus musculus BAC clone RP23-2H7 from chromosome 14, complete sequence
          Length = 204554

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 37     ctccctttctctctccccgtc 57
              |||||||||||||||||||||
Sbjct: 118845 ctccctttctctctccccgtc 118825

>emb|CR376737.4| Zebrafish DNA sequence from clone CH211-14G13 in linkage group 24,
             complete sequence
          Length = 158366

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 45    ctctctccccgtccgacccccttcc 69
             ||||| |||||||||||||||||||
Sbjct: 76238 ctctcaccccgtccgacccccttcc 76214

>gb|BT017810.1| Zea mays clone EL01N0507A04.c mRNA sequence
          Length = 1011

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 178 ggaggtgccgccggagatgc 197
           ||||||||||||||||||||
Sbjct: 239 ggaggtgccgccggagatgc 258

>gb|AY725781.1| Oncometopia nigricans putative rhodopsin mRNA, complete cds
          Length = 1146

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 180 aggtgccgccggagatgctc 199
           ||||||||||||||||||||
Sbjct: 83  aggtgccgccggagatgctc 102

>gb|AC118318.7| Rattus norvegicus 7 BAC CH230-15G17 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 128601

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    cactccctttctctctcccc 54
             ||||||||||||||||||||
Sbjct: 14384 cactccctttctctctcccc 14403

>emb|AL136221.38| Human DNA sequence from clone RP11-391H12 on chromosome 13 Contains the
              CUL4A gene for cullin 4A, the LAMP1 gene for
              lysosomal-associated membrane protein 1, the GRTP1 gene for
              growth hormone regulated TBC protein 1, a novel gene, the
              5' end of a novel gene (FLJ11305) an LDHB (lactate
              dehydrogenase B) pseudogene and six CpG islands, complete
              sequence
          Length = 188896

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     acccccttcccctcttctcc 79
              ||||||||||||||||||||
Sbjct: 163051 acccccttcccctcttctcc 163070

>gb|DQ442996.1| Triticum aestivum phosphomannomutase mRNA, complete cds
          Length = 750

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 178 ggaggtgccgccggagatgctcga 201
           ||||||| ||||||||||||||||
Sbjct: 75  ggaggtgacgccggagatgctcga 98

>gb|AC124591.4| Mus musculus BAC clone RP23-136G17 from chromosome 8, complete sequence
          Length = 201039

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    cccttcccctcttctccacg 82
             ||||||||||||||||||||
Sbjct: 98543 cccttcccctcttctccacg 98562

>gb|AC021761.8| Homo sapiens chromosome 11, clone RP11-361M6, complete sequence
          Length = 182789

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     cactccctttctctctcccc 54
              ||||||||||||||||||||
Sbjct: 145867 cactccctttctctctcccc 145848

>gb|AC092751.4| Genomic sequence for Mus musculus, clone RP23-113P18, complete sequence
          Length = 209990

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    cactccctttctctctcccc 54
             ||||||||||||||||||||
Sbjct: 56888 cactccctttctctctcccc 56907

>gb|AY103805.1| Zea mays PCO119314 mRNA sequence
          Length = 1791

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 60 acccccttcccctcttctcc 79
          ||||||||||||||||||||
Sbjct: 39 acccccttcccctcttctcc 58

>gb|BC093401.1| Rattus norvegicus cathepsin W, mRNA (cDNA clone MGC:112764
           IMAGE:7389584), complete cds
          Length = 1272

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 104 acctcgccgctccaccccct 123
           ||||||||||||||||||||
Sbjct: 947 acctcgccgctccaccccct 966

>gb|AC162945.5| Mus musculus BAC clone RP23-60O19 from chromosome 8, complete sequence
          Length = 221852

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 63     cccttcccctcttctccacg 82
              ||||||||||||||||||||
Sbjct: 196548 cccttcccctcttctccacg 196567

>emb|AL773563.12| Mouse DNA sequence from clone RP23-414L19 on chromosome 2, complete
             sequence
          Length = 184665

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    cactccctttctctctcccc 54
             ||||||||||||||||||||
Sbjct: 11925 cactccctttctctctcccc 11944

>ref|NM_001024242.1| Rattus norvegicus cathepsin W (Ctsw), mRNA
          Length = 1272

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 104 acctcgccgctccaccccct 123
           ||||||||||||||||||||
Sbjct: 947 acctcgccgctccaccccct 966

>gb|AC114897.43| Mus musculus strain C57BL/6J clone rp23-158e11 map 8, complete sequence
          Length = 202175

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    cccttcccctcttctccacg 82
             ||||||||||||||||||||
Sbjct: 98783 cccttcccctcttctccacg 98802


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,103,374
Number of Sequences: 3902068
Number of extensions: 2103374
Number of successful extensions: 49301
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49250
Number of HSP's gapped (non-prelim): 51
length of query: 249
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 227
effective length of database: 17,147,199,772
effective search space: 3892414348244
effective search space used: 3892414348244
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)