>ref|XM_465561.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3440

 Score =  129 bits (65), Expect = 7e-27
 Identities = 209/256 (81%), Gaps = 12/256 (4%)
 Strand = Plus / Plus

                                                                       
Query: 128 gccgctgtccggcgccgcggcgccccggccggcgagatgaggagccccttccggctaccc 187
           ||||| ||||| ||||||||| | |||||||||| ||||||   ||||| | |||  | |
Sbjct: 106 gccgccgtccgccgccgcggcactccggccggcgggatgag---cccctccgggcggctc 162

                                                                       
Query: 188 gccgcccccttcgtatccgcgctcgtcctcctcatgctcgctctggttccgtccccggag 247
            ||||||||||||| | | | |||||||| ||  ||||||||||||| ||||| ||||||
Sbjct: 163 cccgcccccttcgtcttccccctcgtcctgctgctgctcgctctggtgccgtcaccggag 222

                                                                       
Query: 248 gcggccgagaccaccacaccggggacccggacgcgcaagctcggccccggcggctcttcc 307
           ||||||||| ||||    |||||||| |||||||||||| |||||  || ||      ||
Sbjct: 223 gcggccgagtccacg---ccggggacgcggacgcgcaagatcggcggcgccg------cc 273

                                                                       
Query: 308 tcggtgttctcgctcttcaacctcaagccccagagcaagttctggacggaatcggtcatg 367
           |||||||||||||||||||||||||||||||||| |||||||||| |||| || ||||| 
Sbjct: 274 tcggtgttctcgctcttcaacctcaagccccagaacaagttctggtcggagtccgtcatc 333

                           
Query: 368 cggacagagttcgatg 383
           || || || |||||||
Sbjct: 334 cgcacggaattcgatg 349

>dbj|AK066401.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063N21, full
           insert sequence
          Length = 3439

 Score =  121 bits (61), Expect = 2e-24
 Identities = 208/256 (81%), Gaps = 12/256 (4%)
 Strand = Plus / Plus

                                                                       
Query: 128 gccgctgtccggcgccgcggcgccccggccggcgagatgaggagccccttccggctaccc 187
           ||||| ||||| ||||||||| | |||||||||| ||||||   ||||| | |||  | |
Sbjct: 106 gccgccgtccgccgccgcggcactccggccggcgggatgag---cccctccgggcggctc 162

                                                                       
Query: 188 gccgcccccttcgtatccgcgctcgtcctcctcatgctcgctctggttccgtccccggag 247
            ||||||||||||| | | | |||||||| ||  || |||||||||| ||||| ||||||
Sbjct: 163 cccgcccccttcgtcttccccctcgtcctgctgctgttcgctctggtgccgtcaccggag 222

                                                                       
Query: 248 gcggccgagaccaccacaccggggacccggacgcgcaagctcggccccggcggctcttcc 307
           ||||||||| ||||    |||||||| |||||||||||| |||||  || ||      ||
Sbjct: 223 gcggccgagtccacg---ccggggacgcggacgcgcaagatcggcggcgccg------cc 273

                                                                       
Query: 308 tcggtgttctcgctcttcaacctcaagccccagagcaagttctggacggaatcggtcatg 367
           |||||||||||||||||||||||||||||||||| |||||||||| |||| || ||||| 
Sbjct: 274 tcggtgttctcgctcttcaacctcaagccccagaacaagttctggtcggagtccgtcatc 333

                           
Query: 368 cggacagagttcgatg 383
           || || || |||||||
Sbjct: 334 cgcacggaattcgatg 349

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 110/131 (83%), Gaps = 9/131 (6%)
 Strand = Plus / Plus

                                                                            
Query: 236      ccgtccccggaggcggccgagaccaccacaccggggacccggacgcgcaagctcggcccc 295
                ||||| ||||||||||||||| ||||    |||||||| |||||||||||| |||||  |
Sbjct: 15936110 ccgtcaccggaggcggccgagtccacg---ccggggacgcggacgcgcaagatcggcggc 15936166

                                                                            
Query: 296      ggcggctcttcctcggtgttctcgctcttcaacctcaagccccagagcaagttctggacg 355
                | ||      |||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 15936167 gccg------cctcggtgttctcgctcttcaacctcaagccccagaacaagttctggtcg 15936220

                           
Query: 356      gaatcggtcat 366
                || || |||||
Sbjct: 15936221 gagtccgtcat 15936231



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 86/107 (80%), Gaps = 3/107 (2%)
 Strand = Plus / Plus

                                                                            
Query: 128      gccgctgtccggcgccgcggcgccccggccggcgagatgaggagccccttccggctaccc 187
                ||||| ||||| ||||||||| | |||||||||| ||||||   ||||| | |||  | |
Sbjct: 15935906 gccgccgtccgccgccgcggcactccggccggcgggatgag---cccctccgggcggctc 15935962

                                                               
Query: 188      gccgcccccttcgtatccgcgctcgtcctcctcatgctcgctctggt 234
                 ||||||||||||| | | | |||||||| ||  |||||||||||||
Sbjct: 15935963 cccgcccccttcgtcttccccctcgtcctgctgctgctcgctctggt 15936009

>dbj|AP004131.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1057_F01
          Length = 120026

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 110/131 (83%), Gaps = 9/131 (6%)
 Strand = Plus / Plus

                                                                         
Query: 236   ccgtccccggaggcggccgagaccaccacaccggggacccggacgcgcaagctcggcccc 295
             ||||| ||||||||||||||| ||||    |||||||| |||||||||||| |||||  |
Sbjct: 79785 ccgtcaccggaggcggccgagtccacg---ccggggacgcggacgcgcaagatcggcggc 79841

                                                                         
Query: 296   ggcggctcttcctcggtgttctcgctcttcaacctcaagccccagagcaagttctggacg 355
             | ||      |||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 79842 gccg------cctcggtgttctcgctcttcaacctcaagccccagaacaagttctggtcg 79895

                        
Query: 356   gaatcggtcat 366
             || || |||||
Sbjct: 79896 gagtccgtcat 79906



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 86/107 (80%), Gaps = 3/107 (2%)
 Strand = Plus / Plus

                                                                         
Query: 128   gccgctgtccggcgccgcggcgccccggccggcgagatgaggagccccttccggctaccc 187
             ||||| ||||| ||||||||| | |||||||||| ||||||   ||||| | |||  | |
Sbjct: 79581 gccgccgtccgccgccgcggcactccggccggcgggatgag---cccctccgggcggctc 79637

                                                            
Query: 188   gccgcccccttcgtatccgcgctcgtcctcctcatgctcgctctggt 234
              ||||||||||||| | | | |||||||| ||  |||||||||||||
Sbjct: 79638 cccgcccccttcgtcttccccctcgtcctgctgctgctcgctctggt 79684

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 139      gcgccgcggcgccccggccggcgag 163
                |||||||||||||| ||||||||||
Sbjct: 28392563 gcgccgcggcgcccgggccggcgag 28392539

>dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0470D12
          Length = 157248

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 139    gcgccgcggcgccccggccggcgag 163
              |||||||||||||| ||||||||||
Sbjct: 118126 gcgccgcggcgcccgggccggcgag 118102

>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 280     gcgcaagctcggccccggcg 299
               ||||||||||||||||||||
Sbjct: 3025107 gcgcaagctcggccccggcg 3025126

>ref|XM_957564.1| Neurospora crassa OR74A hypothetical protein ( (AF401237)
            cystathionine beta-lyase [Neurospora crassa OR74A] )
            (NCU07987.1) partial mRNA
          Length = 1374

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 245  gaggcggccgagaccaccac 264
            ||||||||||||||||||||
Sbjct: 1333 gaggcggccgagaccaccac 1352

>ref|XM_328692.1| Neurospora crassa OR74A hypothetical protein ( (AF401237)
            cystathionine beta-lyase [Neurospora crassa OR74A] )
            (NCU07987.1) partial mRNA
          Length = 1374

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 245  gaggcggccgagaccaccac 264
            ||||||||||||||||||||
Sbjct: 1333 gaggcggccgagaccaccac 1352

>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 130     cgctgtccggcgccgcggcg 149
               ||||||||||||||||||||
Sbjct: 2905520 cgctgtccggcgccgcggcg 2905501

>ref|XM_534089.2| PREDICTED: Canis familiaris similar to HMT1 hnRNP
           methyltransferase-like 3, transcript variant 1
           (LOC476887), mRNA
          Length = 1864

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 135 tccggcgccgcggcgccccggccg 158
           |||| |||||||||||||||||||
Sbjct: 167 tccgccgccgcggcgccccggccg 144

>gb|AC125405.4| Mus musculus BAC clone RP23-29M17 from 14, complete sequence
          Length = 190653

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 1     tctggaagaaacagaagacaccat 24
             ||||||||||| ||||||||||||
Sbjct: 82556 tctggaagaaaaagaagacaccat 82579

>emb|AL592043.7| Human DNA sequence from clone RP11-281B1 on chromosome Xp21.3-22.12
              Contains part of a novel gene, an arginine/serine-rich
              splicing factor 2 (SFRS2) pseudogene and a CpG island,
              complete sequence
          Length = 184391

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 6      aagaaacagaagacaccatc 25
              ||||||||||||||||||||
Sbjct: 152283 aagaaacagaagacaccatc 152264

>gb|AC183606.2| Pan troglodytes BAC clone CH251-286M5 from chromosome 12, complete
             sequence
          Length = 171738

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     aagaaacagaagacaccatc 25
             ||||||||||||||||||||
Sbjct: 24768 aagaaacagaagacaccatc 24749

>emb|AL356440.11| Human DNA sequence from clone RP1-299F11 on chromosome 11 Contains part
             of a gene similar to D.melanogaster protein (CG14464),
             STSs, GSSs and a CpG island, complete sequence
          Length = 54446

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 234   ttccgtccccggaggcggcc 253
             ||||||||||||||||||||
Sbjct: 43010 ttccgtccccggaggcggcc 42991

>gb|AC027667.20| Homo sapiens 12 BAC RP11-972L6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 157801

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     aagaaacagaagacaccatc 25
             ||||||||||||||||||||
Sbjct: 30115 aagaaacagaagacaccatc 30096

>gb|AF401237.1|AF401237 Neurospora crassa cystathionine beta-lyase (met-2) gene, complete cds
          Length = 2875

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 245  gaggcggccgagaccaccac 264
            ||||||||||||||||||||
Sbjct: 2638 gaggcggccgagaccaccac 2657

>gb|AC013731.10| Homo sapiens BAC clone RP11-546J1 from 2, complete sequence
          Length = 151851

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 50     gatgaactgagacagtagca 69
              ||||||||||||||||||||
Sbjct: 102412 gatgaactgagacagtagca 102431

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 205     cgcgctcgtcctcctcatgc 224
               ||||||||||||||||||||
Sbjct: 7474005 cgcgctcgtcctcctcatgc 7473986

>gb|AC084357.23| Homo sapiens 12q BAC RP11-415I12 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 188527

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 6      aagaaacagaagacaccatc 25
              ||||||||||||||||||||
Sbjct: 119132 aagaaacagaagacaccatc 119151

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 139     gcgccgcggcgccccggccg 158
               ||||||||||||||||||||
Sbjct: 1342244 gcgccgcggcgccccggccg 1342225



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 137   cggcgccgcggcgccccggccggc 160
             |||||||||||||||| |||||||
Sbjct: 77505 cggcgccgcggcgcccgggccggc 77528

>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 124     cgcagccgctgtccggcgcc 143
               ||||||||||||||||||||
Sbjct: 2404025 cgcagccgctgtccggcgcc 2404006


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,539,222
Number of Sequences: 3902068
Number of extensions: 2539222
Number of successful extensions: 54983
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54236
Number of HSP's gapped (non-prelim): 743
length of query: 383
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 361
effective length of database: 17,147,199,772
effective search space: 6190139117692
effective search space used: 6190139117692
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)