>NCL1_YEAST (P38205) Putative methyltransferase NCL1 (EC 2.1.1.-)|
          Length = 684

 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 24/70 (34%), Positives = 33/70 (47%)
 Frame = +3

Query: 165 RENVWKDNPRRPPASAGEGGEGNGWQPFATENLAFEAYYKGQQIVPEEEWDAFMSMLRKP 344
           R+N  K N +   A      + N W     EN  +E YYK   + PE++W+ F    + P
Sbjct: 4   RKNFKKGNKKTFGARDDSRAQKN-WSELVKENEKWEKYYKTLALFPEDQWEEFKKTCQAP 62

Query: 345 LPAAFRINAS 374
           LP  FRI  S
Sbjct: 63  LPLTFRITGS 72

>YLH4_SCHPO (Q9HGQ2) Hypothetical protein C17D4.04 in chromosome I|
          Length = 654

 Score = 33.5 bits (75), Expect = 0.27
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +3

Query: 258 NLAFEAYYKGQQIVPEEEWDAFMSMLRKPLPAAFRINAS 374
           N  FE YY+ Q++V E+++      L + LP  FRI AS
Sbjct: 12  NENFEKYYRLQKLVTEDDFILLKQKLTEQLPTTFRITAS 50

>PABS_STRGR (P32483) Para-aminobenzoate synthase (EC 6.3.5.8) (P-aminobenzoic|
           acid synthase) (PABA synthase)
          Length = 723

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 193 GALPPP-PAKEARATAGSPSPRRTWPSRLTTR 285
           G LPPP PA+E +AT G+P   R     L TR
Sbjct: 204 GTLPPPAPARETKATTGTPRRLRVIAKSLPTR 235

>ICP34_HHV1N (P37319) Infected cell protein ICP34.5 (Neurovirulence factor|
           ICP34.5)
          Length = 245

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +1

Query: 190 PGALPPPPAKEARATAGSPSPRRTWP 267
           P + PP PA EAR TA +P PR   P
Sbjct: 77  PDSPPPEPAPEARPTAAAPRPRSPPP 102

>ICP34_HHV1D (P37318) Infected cell protein ICP34.5 (Neurovirulence factor|
           ICP34.5)
          Length = 252

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +1

Query: 190 PGALPPPPAKEARATAGSPSPRRTWP 267
           P + PP PA EAR TA +P PR   P
Sbjct: 84  PDSPPPEPAPEARPTAAAPRPRSPPP 109

>ICP34_HHV1F (P08353) Infected cell protein ICP34.5 (Neurovirulence factor|
           ICP34.5)
          Length = 263

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +1

Query: 190 PGALPPPPAKEARATAGSPSPRRTWP 267
           P + PP PA EAR TA +P PR   P
Sbjct: 83  PDSPPPEPAPEARPTAAAPRPRSPPP 108

>BARH1_DROAN (P22544) Homeobox protein B-H1 (Homeobox BarH1 protein)|
          Length = 606

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +1

Query: 202 PPPPAKEARATAGSPSP 252
           PPPP+  A AT GSPSP
Sbjct: 518 PPPPSSAAAATGGSPSP 534

>RL1_HHV11 (O12396) Neurovirulence factor RL1 (Neurovirulence factor ICP34.5)|
          Length = 248

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 190 PGALPPPPAKEARATAGSPSPR 255
           P + PP PA EAR TA +P PR
Sbjct: 83  PDSPPPEPAPEARPTAAAPRPR 104

>CLC14_HUMAN (Q86T13) C-type lectin domain family 14 member A precursor|
           (Epidermal growth factor receptor 5) (EGFR-5)
          Length = 490

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 211 PAKEARATAGSPSPRRTWPSRL 276
           P +   ATA SP P+RTWP R+
Sbjct: 302 PTRRPPATATSPVPQRTWPIRV 323

>EDS5_ARATH (Q945F0) Enhanced disease susceptibility 5 (Eds5) (Salicylic acid|
           induction deficient 1) (Sid1)
          Length = 543

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 317 IPLFLRNNLLPLVVSLEGQVLRGEGLPAVA 228
           IP F+  + LP+ VSLEG +L G  L  V+
Sbjct: 445 IPFFMALSALPMTVSLEGTLLAGRDLKFVS 474

>NIFJ_ANASP (Q06879) Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)|
          Length = 1199

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -2

Query: 253 VAKGCQPLPSPPSPAEA--GGRLGLSFQTFSRSCLK 152
           V K   P+PSP SP     GGR GLS + F+ + +K
Sbjct: 353 VNKNNSPVPSPQSPVPKIIGGRYGLSSKEFTPAMVK 388

>DYR1B_MOUSE (Q9Z188) Dual specificity tyrosine-phosphorylation-regulated kinase|
           1B (EC 2.7.12.1)
          Length = 589

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = -2

Query: 274 ASKARFSVAKGCQPLPSPPSPAEAGGRLGL 185
           AS  R  +  G  PLP P  PA  G RLGL
Sbjct: 549 ASALRTRMTGGRPPLPPPDDPATLGPRLGL 578

>GCYA2_HUMAN (P33402) Guanylate cyclase soluble subunit alpha-2 (EC 4.6.1.2)|
           (GCS-alpha-2)
          Length = 732

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 190 PGALPPPPAKEARATAGSPSPRRTWPSRLTTRGSKLFLRK 309
           PG L P PA  A A A +P+P  +  +   T G++   R+
Sbjct: 43  PGPLEPSPAAAAAAAAPAPTPAASAAAAAATAGARRVQRR 82

>CHEB3_PSEU2 (Q4ZQV7) Chemotaxis response regulator protein-glutamate|
           methylesterase 3 (EC 3.1.1.61)
          Length = 386

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 196 ALPPPPAKEARATAGSPSPRRTWPSRLTT 282
           A P P    +RA+A +P+P R  PSR  T
Sbjct: 147 AAPAPSTLSSRASAPAPAPARAVPSRTAT 175

>CCA_METCA (Q60CQ4) Multifunctional CCA protein [Includes: CCA-adding enzyme|
           (EC 2.7.7.25) (EC 2.7.7.21) (tRNA
           nucleotidyltransferase) (tRNA
           adenylyl-/cytidylyl-transferase) (tRNA
           CCA-pyrophosphorylase) (tRNA-NT); 2'-nucleotidase (EC
           3.1.3.-); 2',3'-cycli
          Length = 425

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 294 IVPEEEWDAFMSMLRKPLPAA-FRINASCQFFKDICSQLENDF 419
           +VPE  W  F   L +P P+A FR    C   K +  ++E  F
Sbjct: 172 LVPERVWAEFAKALAEPAPSAFFRTLRDCGALKRLFPEIERLF 214

>RSMB_CHICK (Q9PV94) Small nuclear ribonucleoprotein-associated protein B'|
           (snRNP-B') (Sm protein B') (Sm-B') (SmB') (snRPB')
          Length = 240

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
 Frame = -1

Query: 371 RINPKSSWQWLPEHAHE---GIPLFLRNNLLPLVVSLEGQVLRGEGLPAVALASFAGGG- 204
           +I PK+S Q  PE   +   G+ L    NL+ + V  EG   +  G+  V LA  AGG  
Sbjct: 50  KIKPKNSKQ--PEREEKRVLGLVLLRGENLVSMTV--EGPPPKDTGIARVPLAGAAGGPG 105

Query: 203 -GRAPGVVLP 177
            GRA G  +P
Sbjct: 106 VGRAAGRGVP 115

>HAND1_RABIT (P57100) Heart- and neural crest derivatives-expressed protein 1|
           (Extraembryonic tissues, heart, autonomic nervous system
           and neural crest derivatives-expressed protein 1)
           (eHAND)
          Length = 215

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 17/44 (38%), Positives = 19/44 (43%)
 Frame = +1

Query: 190 PGALPPPPAKEARATAGSPSPRRTWPSRLTTRGSKLFLRKSGMP 321
           P   PPP A  A AT G  +     P RL   G +L  RK   P
Sbjct: 57  PTGGPPPTAAAAAATYGPDTRPGQSPGRLEALGGRLGRRKGSGP 100

>CYSP1_ORYSA (Q7XR52) Cysteine protease 1 precursor (EC 3.4.22.-) (OsCP1)|
          Length = 490

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 274 ASKARFSVAKGCQPLPSPPSPA 209
           A  A + + KG  P PSPPSPA
Sbjct: 367 AMMASYPIKKGPNPKPSPPSPA 388


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,476,078
Number of Sequences: 219361
Number of extensions: 1018861
Number of successful extensions: 5564
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 4807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5527
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)