ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl43c07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC119670.3| Oryza sativa (japonica cultivar-group) chromosome... 48 0.024
2gb|AC119071.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0... 48 0.024
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.024
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 48 0.024
5gb|AC008691.7| Homo sapiens chromosome 5 clone CTB-63A22, comple... 46 0.096
6gb|AC006970.6| Homo sapiens PAC clone RP4-725G10 from 7, complet... 44 0.38
7gb|AC182391.3| Pan troglodytes BAC clone CH251-510H16 from chrom... 44 0.38
8ref|XM_848832.1| PREDICTED: Canis familiaris similar to esophage... 40 5.9
9gb|AC148171.16| Medicago truncatula clone mth2-30a2, complete se... 40 5.9
10gb|AC114289.2| Homo sapiens chromosome 5 clone CTD-2541N22, comp... 40 5.9
11emb|AL831774.17| Mouse DNA sequence from clone RP23-301P13 on ch... 40 5.9
12gb|AF085169.1|AF085169 Triticum aestivum ARK protein and LRk-typ... 40 5.9

>gb|AC119670.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0007H22, complete sequence
          Length = 160938

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 327   ttactaatctgaaggaactgccggtaaaggtt 358
             ||||||||||||||||| ||||||| ||||||
Sbjct: 82734 ttactaatctgaaggaattgccggtcaaggtt 82703



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>gb|AC119071.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0044D15 BAC genomic
              sequence, complete sequence
          Length = 144544

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                              
Query: 327    ttactaatctgaaggaactgccggtaaaggtt 358
              ||||||||||||||||| ||||||| ||||||
Sbjct: 134965 ttactaatctgaaggaattgccggtcaaggtt 134996



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                               
Query: 327     ttactaatctgaaggaactgccggtaaaggtt 358
               ||||||||||||||||| ||||||| ||||||
Sbjct: 6804117 ttactaatctgaaggaattgccggtcaaggtt 6804148



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                               
Query: 327     ttactaatctgaaggaactgccggtaaaggtt 358
               ||||||||||||||||| ||||||| ||||||
Sbjct: 6870584 ttactaatctgaaggaattgccggtcaaggtt 6870615



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>gb|AC008691.7| Homo sapiens chromosome 5 clone CTB-63A22, complete sequence
          Length = 153267

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 280   aggagatgaagccatcaaggcca 302
             |||||||||||||||||||||||
Sbjct: 42690 aggagatgaagccatcaaggcca 42668



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>gb|AC006970.6| Homo sapiens PAC clone RP4-725G10 from 7, complete sequence
          Length = 136098

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 177   catgtgagtgctgtcctgctcc 198
             ||||||||||||||||||||||
Sbjct: 28571 catgtgagtgctgtcctgctcc 28550



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>gb|AC182391.3| Pan troglodytes BAC clone CH251-510H16 from chromosome 1, complete
              sequence
          Length = 188995

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 177    catgtgagtgctgtcctgctcc 198
              ||||||||||||||||||||||
Sbjct: 145450 catgtgagtgctgtcctgctcc 145429



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>ref|XM_848832.1| PREDICTED: Canis familiaris similar to esophageal cancer related
           gene 4 protein (LOC611190), mRNA
          Length = 652

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 79  gccttgctctcgcccactgc 98
           ||||||||||||||||||||
Sbjct: 173 gccttgctctcgcccactgc 154



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>gb|AC148171.16| Medicago truncatula clone mth2-30a2, complete sequence
          Length = 158384

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 386   atgagtaatgtaataatgca 405
             ||||||||||||||||||||
Sbjct: 12823 atgagtaatgtaataatgca 12842



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>gb|AC114289.2| Homo sapiens chromosome 5 clone CTD-2541N22, complete sequence
          Length = 187032

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   agtgctgtcctgctccatag 202
             ||||||||||||||||||||
Sbjct: 82499 agtgctgtcctgctccatag 82480



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>emb|AL831774.17| Mouse DNA sequence from clone RP23-301P13 on chromosome 4, complete
             sequence
          Length = 163802

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   cagcagcccccttctttccc 123
             ||||||||||||||||||||
Sbjct: 67474 cagcagcccccttctttccc 67455



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>gb|AF085169.1|AF085169 Triticum aestivum ARK protein and LRk-type protein genes, partial
           cds
          Length = 3919

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 384 tgatgagtaatgtaataatg 403
           ||||||||||||||||||||
Sbjct: 654 tgatgagtaatgtaataatg 673


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,349,436
Number of Sequences: 3902068
Number of extensions: 3349436
Number of successful extensions: 63690
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63634
Number of HSP's gapped (non-prelim): 56
length of query: 442
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 420
effective length of database: 17,147,199,772
effective search space: 7201823904240
effective search space used: 7201823904240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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