Clone Name | bastl43c07 |
---|---|
Clone Library Name | barley_pub |
>gb|AC119670.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0007H22, complete sequence Length = 160938 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Minus Query: 327 ttactaatctgaaggaactgccggtaaaggtt 358 ||||||||||||||||| ||||||| |||||| Sbjct: 82734 ttactaatctgaaggaattgccggtcaaggtt 82703
>gb|AC119071.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0044D15 BAC genomic sequence, complete sequence Length = 144544 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Plus Query: 327 ttactaatctgaaggaactgccggtaaaggtt 358 ||||||||||||||||| ||||||| |||||| Sbjct: 134965 ttactaatctgaaggaattgccggtcaaggtt 134996
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Plus Query: 327 ttactaatctgaaggaactgccggtaaaggtt 358 ||||||||||||||||| ||||||| |||||| Sbjct: 6804117 ttactaatctgaaggaattgccggtcaaggtt 6804148
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Plus Query: 327 ttactaatctgaaggaactgccggtaaaggtt 358 ||||||||||||||||| ||||||| |||||| Sbjct: 6870584 ttactaatctgaaggaattgccggtcaaggtt 6870615
>gb|AC008691.7| Homo sapiens chromosome 5 clone CTB-63A22, complete sequence Length = 153267 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Minus Query: 280 aggagatgaagccatcaaggcca 302 ||||||||||||||||||||||| Sbjct: 42690 aggagatgaagccatcaaggcca 42668
>gb|AC006970.6| Homo sapiens PAC clone RP4-725G10 from 7, complete sequence Length = 136098 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 177 catgtgagtgctgtcctgctcc 198 |||||||||||||||||||||| Sbjct: 28571 catgtgagtgctgtcctgctcc 28550
>gb|AC182391.3| Pan troglodytes BAC clone CH251-510H16 from chromosome 1, complete sequence Length = 188995 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 177 catgtgagtgctgtcctgctcc 198 |||||||||||||||||||||| Sbjct: 145450 catgtgagtgctgtcctgctcc 145429
>ref|XM_848832.1| PREDICTED: Canis familiaris similar to esophageal cancer related gene 4 protein (LOC611190), mRNA Length = 652 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 gccttgctctcgcccactgc 98 |||||||||||||||||||| Sbjct: 173 gccttgctctcgcccactgc 154
>gb|AC148171.16| Medicago truncatula clone mth2-30a2, complete sequence Length = 158384 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 atgagtaatgtaataatgca 405 |||||||||||||||||||| Sbjct: 12823 atgagtaatgtaataatgca 12842
>gb|AC114289.2| Homo sapiens chromosome 5 clone CTD-2541N22, complete sequence Length = 187032 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 agtgctgtcctgctccatag 202 |||||||||||||||||||| Sbjct: 82499 agtgctgtcctgctccatag 82480
>emb|AL831774.17| Mouse DNA sequence from clone RP23-301P13 on chromosome 4, complete sequence Length = 163802 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 cagcagcccccttctttccc 123 |||||||||||||||||||| Sbjct: 67474 cagcagcccccttctttccc 67455
>gb|AF085169.1|AF085169 Triticum aestivum ARK protein and LRk-type protein genes, partial cds Length = 3919 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 tgatgagtaatgtaataatg 403 |||||||||||||||||||| Sbjct: 654 tgatgagtaatgtaataatg 673 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,349,436 Number of Sequences: 3902068 Number of extensions: 3349436 Number of successful extensions: 63690 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63634 Number of HSP's gapped (non-prelim): 56 length of query: 442 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 420 effective length of database: 17,147,199,772 effective search space: 7201823904240 effective search space used: 7201823904240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)