ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl43c06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_536302.2| PREDICTED: Canis familiaris similar to Ras GTPa... 44 0.19
2ref|XM_469559.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.75
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 0.75
4ref|XM_992477.1| PREDICTED: Mus musculus adenylate kinase 3 alph... 42 0.75
5emb|CR749722.1| Homo sapiens mRNA; cDNA DKFZp434N071 (from clone... 42 0.75
6gb|BC033015.2| Homo sapiens RAS p21 protein activator (GTPase ac... 42 0.75
7emb|AL606595.4|OSJN00035 Oryza sativa genomic DNA, chromosome 4,... 42 0.75
8emb|AL662946.2|OSJN00139 Oryza sativa genomic DNA, chromosome 4,... 42 0.75
9emb|CR858268.1| Pongo pygmaeus mRNA; cDNA DKFZp469B2218 (from cl... 42 0.75
10gb|AC126776.2| Homo sapiens chromosome 5 clone RP11-752D4, compl... 42 0.75
11dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.75
12dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.75
13dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.75
14gb|AC091532.13| Oryza sativa chromosome 3 BAC OSJNBa0078A17 geno... 42 0.75
15dbj|AP005836.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.75
16dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.75
17dbj|AK120849.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.75
18ref|XM_312504.2| Anopheles gambiae str. PEST ENSANGP00000001161 ... 42 0.75
19dbj|AK100557.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.75
20emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete ... 42 0.75
21emb|AL606613.3|OSJN00051 Oryza sativa genomic DNA, chromosome 4,... 42 0.75
22dbj|AB209106.1| Homo sapiens mRNA for RAS p21 protein activator ... 42 0.75
23emb|AL845364.4| Mouse DNA sequence from clone RP23-301M3 on chro... 42 0.75
24ref|XM_469033.1| Oryza sativa (japonica cultivar-group), mRNA 40 2.9
25gb|AC145381.4| Oryza sativa (japonica cultivar-group) chromosome... 40 2.9
26gb|AC139886.3| Mus musculus BAC clone RP23-120M10 from chromosom... 40 2.9
27gb|AC127316.3| Mus musculus BAC clone RP23-222G16 from 13, compl... 40 2.9
28gb|AC121125.9| Mus musculus chromosome 5, clone RP23-10F17, comp... 40 2.9
29gb|AC138001.2| Oryza sativa chromosome 3 BAC OSJNBa0093M23 genom... 40 2.9
30dbj|AK001574.1| Homo sapiens cDNA FLJ10712 fis, clone NT2RP30009... 40 2.9
31gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nippon... 40 2.9
32gb|AC116380.14| Mus musculus chromosome 1, clone RP23-6F21, comp... 40 2.9
33dbj|AK046620.1| Mus musculus 4 days neonate male adipose cDNA, R... 40 2.9
34ref|NM_001015824.1| Xenopus tropicalis MGC97715 protein (MGC9771... 40 2.9
35gb|BC090107.1| Xenopus tropicalis MGC97715 protein, mRNA (cDNA c... 40 2.9
36gb|AC138124.2| Homo sapiens 3 BAC RP11-191P21 (Roswell Park Canc... 40 2.9
37dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 40 2.9
38dbj|AK110820.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.9
39dbj|AK107712.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.9
40emb|CR556712.11| Zebrafish DNA sequence from clone DKEY-28E7 in ... 40 2.9
41gb|AF007553.1|AF007553 Thermus aquaticus caldophilus mismatch re... 40 2.9
42gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 40 2.9
43gb|U33117.1|TAU33117 Thermus aquaticus MutS gene, complete cds 40 2.9
44gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 2.9
45dbj|D63810.1|TTHMUTS Thermus thermophilus mutS gene for MutS, co... 40 2.9 
>ref|XM_536302.2| PREDICTED: Canis familiaris similar to Ras GTPase-activating
           protein 1 (GTPase-activating protein) (GAP) (Ras p21
           protein activator) (p120GAP) (RasGAP) (LOC479158), mRNA
          Length = 4334

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 209 gaggagggggcgcggcggcggg 230
           ||||||||||||||||||||||
Sbjct: 149 gaggagggggcgcggcggcggg 170
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>ref|XM_469559.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 990

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 198 tggtggagatggaggaggggg 218
           |||||||||||||||||||||
Sbjct: 483 tggtggagatggaggaggggg 503
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 198      tggtggagatggaggaggggg 218
                |||||||||||||||||||||
Sbjct: 28703409 tggtggagatggaggaggggg 28703389



 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 207      tggaggagggggcgcggcggcggg 230
                |||||||||||||| |||||||||
Sbjct: 25043465 tggaggagggggcgaggcggcggg 25043442



 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 196     catggtggagatggaggagg 215
               ||||||||||||||||||||
Sbjct: 2566593 catggtggagatggaggagg 2566574
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>ref|XM_992477.1| PREDICTED: Mus musculus adenylate kinase 3 alpha-like 1 (Ak3l1),
           mRNA
          Length = 1659

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 209 gaggagggggcgcggcggcgg 229
           |||||||||||||||||||||
Sbjct: 128 gaggagggggcgcggcggcgg 148
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>emb|CR749722.1| Homo sapiens mRNA; cDNA DKFZp434N071 (from clone DKFZp434N071)
          Length = 5009

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 210 aggagggggcgcggcggcggg 230
           |||||||||||||||||||||
Sbjct: 404 aggagggggcgcggcggcggg 424
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>gb|BC033015.2| Homo sapiens RAS p21 protein activator (GTPase activating protein)
           1, transcript variant 1, mRNA (cDNA clone MGC:26760
           IMAGE:4829173), complete cds
          Length = 4405

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 210 aggagggggcgcggcggcggg 230
           |||||||||||||||||||||
Sbjct: 27  aggagggggcgcggcggcggg 47
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>emb|AL606595.4|OSJN00035 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044K18,
             complete sequence
          Length = 176615

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 194   gccatggtggagatggaggaggggg 218
             |||||||||| ||||||||||||||
Sbjct: 89611 gccatggtggggatggaggaggggg 89635
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>emb|AL662946.2|OSJN00139 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ991113_30, complete
              sequence
          Length = 141128

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 209    gaggagggggcgcggcggcgg 229
              |||||||||||||||||||||
Sbjct: 132045 gaggagggggcgcggcggcgg 132065
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>emb|CR858268.1| Pongo pygmaeus mRNA; cDNA DKFZp469B2218 (from clone DKFZp469B2218)
          Length = 4648

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 210 aggagggggcgcggcggcggg 230
           |||||||||||||||||||||
Sbjct: 286 aggagggggcgcggcggcggg 306
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>gb|AC126776.2| Homo sapiens chromosome 5 clone RP11-752D4, complete sequence
          Length = 34335

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 210   aggagggggcgcggcggcggg 230
             |||||||||||||||||||||
Sbjct: 15613 aggagggggcgcggcggcggg 15633
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 209      gaggagggggcgcggcggcgg 229
                |||||||||||||||||||||
Sbjct: 24415634 gaggagggggcgcggcggcgg 24415654



 Score = 42.1 bits (21), Expect = 0.75
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 194      gccatggtggagatggaggaggggg 218
                |||||||||| ||||||||||||||
Sbjct: 23924638 gccatggtggggatggaggaggggg 23924662
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 49       actctccatcgctctcaccat 69
                |||||||||||||||||||||
Sbjct: 11613939 actctccatcgctctcaccat 11613919
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 198      tggtggagatggaggaggggg 218
                |||||||||||||||||||||
Sbjct: 28794733 tggtggagatggaggaggggg 28794713



 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 207      tggaggagggggcgcggcggcggg 230
                |||||||||||||| |||||||||
Sbjct: 25134774 tggaggagggggcgaggcggcggg 25134751



 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 196     catggtggagatggaggagg 215
               ||||||||||||||||||||
Sbjct: 2566703 catggtggagatggaggagg 2566684
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>gb|AC091532.13| Oryza sativa chromosome 3 BAC OSJNBa0078A17 genomic sequence, complete
             sequence
          Length = 147344

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 198   tggtggagatggaggaggggg 218
             |||||||||||||||||||||
Sbjct: 10390 tggtggagatggaggaggggg 10370
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>dbj|AP005836.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0013F08
          Length = 166989

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 49     actctccatcgctctcaccat 69
              |||||||||||||||||||||
Sbjct: 129946 actctccatcgctctcaccat 129926
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>dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0711F01
          Length = 193091

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 49    actctccatcgctctcaccat 69
             |||||||||||||||||||||
Sbjct: 48573 actctccatcgctctcaccat 48553
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>dbj|AK120849.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023023F02, full
           insert sequence
          Length = 3155

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 209 gaggagggggcgcggcggcgg 229
           |||||||||||||||||||||
Sbjct: 86  gaggagggggcgcggcggcgg 66
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>ref|XM_312504.2| Anopheles gambiae str. PEST ENSANGP00000001161
           (ENSANGG00000001000), partial mRNA
          Length = 2238

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 50  ctctccatcgctctcaccatc 70
           |||||||||||||||||||||
Sbjct: 630 ctctccatcgctctcaccatc 610
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>dbj|AK100557.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023104C08, full
           insert sequence
          Length = 2319

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 49  actctccatcgctctcaccat 69
           |||||||||||||||||||||
Sbjct: 503 actctccatcgctctcaccat 483
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>emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete genome; segment 27/29
          Length = 303450

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 12    gtcaccggccgcctccaacgg 32
             |||||||||||||||||||||
Sbjct: 15857 gtcaccggccgcctccaacgg 15877
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>emb|AL606613.3|OSJN00051 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K20,
            complete sequence
          Length = 116983

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 209  gaggagggggcgcggcggcgg 229
            |||||||||||||||||||||
Sbjct: 8956 gaggagggggcgcggcggcgg 8976
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>dbj|AB209106.1| Homo sapiens mRNA for RAS p21 protein activator 1 isoform 1 variant
           protein
          Length = 3388

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 210 aggagggggcgcggcggcggg 230
           |||||||||||||||||||||
Sbjct: 39  aggagggggcgcggcggcggg 59
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>emb|AL845364.4| Mouse DNA sequence from clone RP23-301M3 on chromosome 4, complete
              sequence
          Length = 205273

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 209    gaggagggggcgcggcggcgg 229
              |||||||||||||||||||||
Sbjct: 175128 gaggagggggcgcggcggcgg 175108
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>ref|XM_469033.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3363

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 207 tggaggagggggcgcggcggcggg 230
           |||||||||||||| |||||||||
Sbjct: 203 tggaggagggggcgaggcggcggg 226
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>gb|AC145381.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0024K17
              map near S16403, complete sequence
          Length = 172238

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 207    tggaggagggggcgcggcggcggg 230
              |||||||||||||| |||||||||
Sbjct: 159902 tggaggagggggcgaggcggcggg 159879
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>gb|AC139886.3| Mus musculus BAC clone RP23-120M10 from chromosome 15, complete
             sequence
          Length = 211336

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 199   ggtggagatggaggaggggg 218
             ||||||||||||||||||||
Sbjct: 80254 ggtggagatggaggaggggg 80273
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>gb|AC127316.3| Mus musculus BAC clone RP23-222G16 from 13, complete sequence
          Length = 203032

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 211   ggagggggcgcggcggcggg 230
             ||||||||||||||||||||
Sbjct: 96893 ggagggggcgcggcggcggg 96874
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>gb|AC121125.9| Mus musculus chromosome 5, clone RP23-10F17, complete sequence
          Length = 264205

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 201    tggagatggaggagggggcg 220
              ||||||||||||||||||||
Sbjct: 174660 tggagatggaggagggggcg 174679
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>gb|AC138001.2| Oryza sativa chromosome 3 BAC OSJNBa0093M23 genomic sequence, complete
             sequence
          Length = 170020

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 207   tggaggagggggcgcggcggcggg 230
             |||||||||||||| |||||||||
Sbjct: 75272 tggaggagggggcgaggcggcggg 75249
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>dbj|AK001574.1| Homo sapiens cDNA FLJ10712 fis, clone NT2RP3000919, highly similar
           to Rattus norvegicus golgi peripheral membrane protein
           p65 mRNA
          Length = 3240

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 197 atggtggagatggaggaggg 216
           ||||||||||||||||||||
Sbjct: 738 atggtggagatggaggaggg 757
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>gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0067N01, from chromosome 3, complete sequence
          Length = 159636

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 196    catggtggagatggaggagg 215
              ||||||||||||||||||||
Sbjct: 103501 catggtggagatggaggagg 103520
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>gb|AC116380.14| Mus musculus chromosome 1, clone RP23-6F21, complete sequence
          Length = 232429

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 38     tccccttcatcactctccat 57
              ||||||||||||||||||||
Sbjct: 105886 tccccttcatcactctccat 105905
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>dbj|AK046620.1| Mus musculus 4 days neonate male adipose cDNA, RIKEN full-length
           enriched library, clone:B430208E24 product:similar to
           RAS GTPASE-ACTIVATING PROTEIN 1 (GTPASE-ACTIVATING
           PROTEIN) (GAP) (RAS P21 PROTEIN ACTIVATOR) (P120GAP)
           (RASGAP) [Rattus norvegicus], full insert sequence
          Length = 1642

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 211 ggagggggcgcggcggcggg 230
           ||||||||||||||||||||
Sbjct: 436 ggagggggcgcggcggcggg 455
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>ref|NM_001015824.1| Xenopus tropicalis MGC97715 protein (MGC97715), mRNA
          Length = 2135

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 196 catggtggagatggaggagg 215
           ||||||||||||||||||||
Sbjct: 849 catggtggagatggaggagg 868
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>gb|BC090107.1| Xenopus tropicalis MGC97715 protein, mRNA (cDNA clone MGC:97715
           IMAGE:6986090), complete cds
          Length = 2135

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 196 catggtggagatggaggagg 215
           ||||||||||||||||||||
Sbjct: 849 catggtggagatggaggagg 868
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>gb|AC138124.2| Homo sapiens 3 BAC RP11-191P21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 67971

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 197   atggtggagatggaggaggg 216
             ||||||||||||||||||||
Sbjct: 48066 atggtggagatggaggaggg 48047
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 196     catggtggagatggaggagg 215
               ||||||||||||||||||||
Sbjct: 1262305 catggtggagatggaggagg 1262286
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>dbj|AK110820.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-171-G11, full
           insert sequence
          Length = 1464

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 207 tggaggagggggcgcggcggcggg 230
           |||||||||||||| |||||||||
Sbjct: 203 tggaggagggggcgaggcggcggg 226
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>dbj|AK107712.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-132-D11, full
           insert sequence
          Length = 816

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 207 tggaggagggggcgcggcggcggg 230
           |||||||||||||| |||||||||
Sbjct: 203 tggaggagggggcgaggcggcggg 226
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>emb|CR556712.11| Zebrafish DNA sequence from clone DKEY-28E7 in linkage group 11,
             complete sequence
          Length = 112718

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 199   ggtggagatggaggaggggg 218
             ||||||||||||||||||||
Sbjct: 20127 ggtggagatggaggaggggg 20146
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>gb|AF007553.1|AF007553 Thermus aquaticus caldophilus mismatch repair protein (mutS) gene,
            complete cds
          Length = 2787

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 196  catggtggagatggaggagg 215
            ||||||||||||||||||||
Sbjct: 2082 catggtggagatggaggagg 2101
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 189     ccccggccatggtggagatg 208
               ||||||||||||||||||||
Sbjct: 1537446 ccccggccatggtggagatg 1537427
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>gb|U33117.1|TAU33117 Thermus aquaticus MutS gene, complete cds
          Length = 3396

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 196  catggtggagatggaggagg 215
            ||||||||||||||||||||
Sbjct: 2426 catggtggagatggaggagg 2445
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 196    catggtggagatggaggagg 215
              ||||||||||||||||||||
Sbjct: 939567 catggtggagatggaggagg 939548
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>dbj|D63810.1|TTHMUTS Thermus thermophilus mutS gene for MutS, complete cds
          Length = 3283

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 196  catggtggagatggaggagg 215
            ||||||||||||||||||||
Sbjct: 2581 catggtggagatggaggagg 2600


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,820,140
Number of Sequences: 3902068
Number of extensions: 1820140
Number of successful extensions: 46573
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46215
Number of HSP's gapped (non-prelim): 358
length of query: 230
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 208
effective length of database: 17,147,199,772
effective search space: 3566617552576
effective search space used: 3566617552576
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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