Clone Information

BLAST Search Result

Clone Name	bastl43c05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	DNL4_ARATH (Q9LL84) DNA ligase 4 (EC 6.5.1.1) (DNA ligase IV) (P...	41	0.002
2	GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region ge...	39	0.009
3	FUSB_BURCE (P24127) Fusaric acid resistance protein fusB	34	0.21
4	FOXD4_MOUSE (Q60688) Forkhead box protein D4 (Forkhead-related p...	34	0.21
5	RBBP6_HUMAN (Q7Z6E9) Retinoblastoma-binding protein 6 (p53-assoc...	33	0.28
6	RBBP6_MOUSE (P97868) Retinoblastoma-binding protein 6 (p53-assoc...	33	0.28
7	MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)	33	0.28
8	YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear pro...	33	0.47
9	SGS3_DROER (P13730) Salivary glue protein Sgs-3 precursor	33	0.47
10	LRP1_HHV1F (P17588) Latency-related protein 1	32	0.62
11	CSKI1_HUMAN (Q8WXD9) Caskin-1 (CASK-interacting protein 1)	32	0.62
12	PER2_HUMAN (O15055) Period circadian protein 2	32	0.80
13	TNKS1_HUMAN (O95271) Tankyrase 1 (EC 2.4.2.30) (TANK1) (Tankyras...	32	0.80
14	TPOR_HUMAN (P40238) Thrombopoietin receptor precursor (TPO-R) (M...	32	0.80
15	WNK4_MOUSE (Q80UE6) Serine/threonine-protein kinase WNK4 (EC 2.7...	32	0.80
16	PACC_ASPFU (Q4WY67) pH-response transcription factor pacC/RIM101	32	1.0
17	GAG_MLVFF (P26806) Gag polyprotein (Core polyprotein) [Contains:...	32	1.0
18	EXON_HHV11 (P04294) Alkaline exonuclease (EC 3.1.11.-)	31	1.4
19	WASIP_RAT (Q6IN36) Wiskott-Aldrich syndrome protein-interacting ...	31	1.4
20	RGA7_SCHPO (O94466) Probable Rho-GTPase-activating protein 7	31	1.4
21	KCNC3_RAT (Q01956) Potassium voltage-gated channel subfamily C m...	31	1.4
22	ARX_MOUSE (O35085) Homeobox protein ARX (Aristaless-related home...	31	1.4
23	ARX_HUMAN (Q96QS3) Homeobox protein ARX (Aristaless-related home...	31	1.4
24	SSBP3_MOUSE (Q9D032) Single-stranded DNA-binding protein 3 (Sequ...	31	1.8
25	SSBP3_HUMAN (Q9BWW4) Single-stranded DNA-binding protein 3 (Sequ...	31	1.8
26	CSKI1_RAT (Q8VHK2) Caskin-1 (CASK-interacting protein 1)	31	1.8
27	TMPSD_MOUSE (Q5U405) Transmembrane protease, serine 13 (EC 3.4.2...	30	2.3
28	KIF12_MOUSE (Q9D2Z8) Kinesin-like protein KIF12	30	2.3
29	HXA3_MOUSE (P02831) Homeobox protein Hox-A3 (Hox-1.5) (MO-10)	30	2.3
30	PI5PA_MOUSE (P59644) Phosphatidylinositol 4,5-bisphosphate 5-pho...	30	2.3
31	GAG_MLVFP (P26805) Gag polyprotein (Core polyprotein) [Contains:...	30	2.3
32	AGRN_CHICK (P31696) Agrin (Fragment)	30	3.1
33	WSP1_SCHPO (O36027) Wiskott-Aldrich syndrome homolog protein 1	30	3.1
34	EXTN1_ARATH (Q38913) Extensin-1 precursor (AtExt1) (AtExt4)	30	4.0
35	ZN672_RAT (Q642B2) Zinc finger protein 672	30	4.0
36	EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline...	30	4.0
37	FRAS1_MOUSE (Q80T14) Extracellular matrix protein FRAS1 precursor	29	5.2
38	TNR1A_BOVIN (O19131) Tumor necrosis factor receptor superfamily ...	29	5.2
39	GP10_DICDI (Q06885) Glycoprotein gp100 precursor (P29F8)	29	5.2
40	CSPG2_HUMAN (P13611) Versican core protein precursor (Large fibr...	29	5.2
41	SNPC4_HUMAN (Q5SXM2) snRNA-activating protein complex subunit 4 ...	29	5.2
42	PRDM2_RAT (Q63755) PR domain zinc finger protein 2 (PR domain-co...	29	6.8
43	WEB1_YEAST (P38968) Protein WEB1 (Protein transport protein SEC31)	29	6.8
44	RX_DROME (Q9W2Q1) Retinal homeobox protein Rx (DRx1) (DRx)	29	6.8
45	DNL4_PONPY (Q5R6L3) DNA ligase 4 (EC 6.5.1.1) (DNA ligase IV) (P...	29	6.8
46	DNL4_MOUSE (Q8BTF7) DNA ligase 4 (EC 6.5.1.1) (DNA ligase IV) (P...	29	6.8
47	DNL4_HUMAN (P49917) DNA ligase 4 (EC 6.5.1.1) (DNA ligase IV) (P...	29	6.8
48	NU5M_HYLLA (P03919) NADH-ubiquinone oxidoreductase chain 5 (EC 1...	29	6.8
49	DNL4_CHICK (Q90YB1) DNA ligase 4 (EC 6.5.1.1) (DNA ligase IV) (P...	29	6.8
50	V70K_TYMV (P10357) 69 kDa protein	29	6.8
51	WASIP_MOUSE (Q8K1I7) Wiskott-Aldrich syndrome protein-interactin...	29	6.8
52	DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-re...	29	6.8
53	NIFA_AZOCA (P09133) Nif-specific regulatory protein	29	6.8
54	TPOR_MOUSE (Q08351) Thrombopoietin receptor precursor (TPO-R) (M...	28	8.9
55	MPL_MPLV (P40931) Myeloproliferative leukemia protein	28	8.9
56	MNT_HUMAN (Q99583) Max-binding protein MNT (Protein ROX) (Myc an...	28	8.9
57	PO121_MOUSE (Q8K3Z9) Nuclear envelope pore membrane protein POM ...	28	8.9
58	GP124_HUMAN (Q96PE1) Probable G-protein coupled receptor 124 pre...	28	8.9
59	HUNB_DROOR (O62537) Protein hunchback	28	8.9
60	CSKI1_MOUSE (Q6P9K8) Caskin-1 (CASK-interacting protein 1)	28	8.9
61	MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, trac...	28	8.9
62	CBP_HUMAN (Q92793) CREB-binding protein (EC 2.3.1.48)	28	8.9

>DNL4_ARATH (Q9LL84) DNA ligase 4 (EC 6.5.1.1) (DNA ligase IV)|
           (Polydeoxyribonucleotide synthase [ATP] 4)
          Length = 1219

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 20/33 (60%), Positives = 27/33 (81%), Gaps = 4/33 (12%)
 Frame = +3

Query: 363 RLVLPSLDCERGSYGLKEA----ALVEALGIAQ 449
           RL++PSLD ERGSYGLKE+     L++ALGI++
Sbjct: 48  RLIIPSLDRERGSYGLKESVLATCLIDALGISR 80

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>GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region gene 1 protein|
          Length = 1509

 Score = 38.5 bits (88), Expect = 0.009
 Identities = 29/100 (29%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
 Frame = +2

Query: 77  PPPLMPSSPHALPLMDLTVATHGLPRAXXXXSPPQSTQSCTPARVSPLSACTSLPTQCPF 256
           PPP    +P A P+          P +    +P     +  P +    S+  SLP Q P 
Sbjct: 676 PPPAQDPAP-ATPVAKGAGLGPQAPDSQASPAPAPQIPAAAPLKGPGPSSSPSLPHQAPL 734

Query: 257 CRSPALARCATTQPP---------LSRAATHVLLHSCPPP 349
             SP L     T+PP         +SR  +   LH CPPP
Sbjct: 735 GDSPHLPSPHPTRPPSRPPSRPQSVSRPPSEPPLHPCPPP 774

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>FUSB_BURCE (P24127) Fusaric acid resistance protein fusB|
          Length = 142

 Score = 33.9 bits (76), Expect = 0.21
 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
 Frame = +2

Query: 89  MPSSPHALPLMDLTVATHGLP--RAXXXXSPPQSTQSCTPARVSPLSACTSLPTQCPFCR 262
           +P+   A+  + + +     P  R     SP +S+ S   +R S  S C+     C   R
Sbjct: 55  LPAPKTAMTTVFIVMQRKAAPCSRKASTGSPARSSGS---SRRSRSSGCSRSSRSCSCWR 111

Query: 263 SPALARCATTQPPLSRA-ATHVLLHSCPPPL 352
           SP  +RCA   PP  RA AT  +  SC P +
Sbjct: 112 SPCGSRCA---PPAPRATATSAVTASCSPAI 139

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>FOXD4_MOUSE (Q60688) Forkhead box protein D4 (Forkhead-related protein FKHL9)|
           (Forkhead-related transcription factor 5) (FREAC-5)
           (Transcription factor FKH-2)
          Length = 444

 Score = 33.9 bits (76), Expect = 0.21
 Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 1/101 (0%)
 Frame = +2

Query: 44  PPHGSHRRHTWPPPLMPSSPH-ALPLMDLTVATHGLPRAXXXXSPPQSTQSCTPARVSPL 220
           PP G H    +PPP +P++ H + P + L  +    P      + P  +  C P    P+
Sbjct: 204 PPSGGHPHCPFPPPAVPATLHVSQPSLLLRYSAPPQPNLAAHPAAPPRSHPCAPLHPHPM 263

Query: 221 SACTSLPTQCPFCRSPALARCATTQPPLSRAATHVLLHSCP 343
                L     +  +P  A  A    PL+  A   +L S P
Sbjct: 264 RYL--LLAAPAYGDNPRKAEGADPATPLAIPALQPVLGSQP 302

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>RBBP6_HUMAN (Q7Z6E9) Retinoblastoma-binding protein 6 (p53-associated cellular|
           protein of testis) (Proliferation potential-related
           protein) (Protein P2P-R) (Retinoblastoma-binding Q
           protein 1) (Protein RBQ-1)
          Length = 1792

 Score = 33.5 bits (75), Expect = 0.28
 Identities = 27/79 (34%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
 Frame = +2

Query: 77  PPPLMPSSPHALPLMDLTVATHGLPRAXXXXSPPQSTQSCTPARVSPLSACTSLPTQCPF 256
           PPPL P  PH LPL          P+      PP +  S  P    P  A  S P     
Sbjct: 561 PPPLYPPPPHTLPLPPGVPPPQFSPQ-FPPGQPPPAGYSVPPPGFPPAPANLSTPWVSSG 619

Query: 257 CRSPALARCATTQ-PPLSR 310
            ++       TTQ PPLSR
Sbjct: 620 VQTAHSNTIPTTQAPPLSR 638

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>RBBP6_MOUSE (P97868) Retinoblastoma-binding protein 6 (p53-associated cellular|
           protein of testis) (Proliferation potential-related
           protein) (Protein P2P-R)
          Length = 1790

 Score = 33.5 bits (75), Expect = 0.28
 Identities = 27/79 (34%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
 Frame = +2

Query: 77  PPPLMPSSPHALPLMDLTVATHGLPRAXXXXSPPQSTQSCTPARVSPLSACTSLPTQCPF 256
           PPPL P  PH LPL          P+      PP +  S  P    P  A  S P     
Sbjct: 562 PPPLYPPPPHTLPLPPGVPPPQFSPQ-FPPGQPPPAGYSVPPPGFPPAPANISTPWVSSG 620

Query: 257 CRSPALARCATTQ-PPLSR 310
            ++       TTQ PPLSR
Sbjct: 621 VQTAHSNTIPTTQAPPLSR 639

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>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)|
          Length = 5179

 Score = 33.5 bits (75), Expect = 0.28
 Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
 Frame = +2

Query: 71   TWPPPL-MPSSPHALPLMDLTVATHGLPRAXXXXSPPQSTQSCTPARVSPLSACTSLPTQ 247
            T PPP   PS P   P+   T +T  LP      SPP +T +  P   +P    T+ P+ 
Sbjct: 1531 TTPPPTTTPSPPTTTPITPPT-STTTLP-PTTTPSPPPTTTTTPPPTTTPSPPTTTTPS- 1587

Query: 248  CPFCRSPALARCATTQPPLSRAATHVLLHSCPPP 349
                  P +    TT PP +  +      + PPP
Sbjct: 1588 -----PPTIT--TTTPPPTTTPSPPTTTTTTPPP 1614



 Score = 32.0 bits (71), Expect = 0.80
 Identities = 25/93 (26%), Positives = 32/93 (34%)
 Frame = +2

Query: 71   TWPPPLMPSSPHALPLMDLTVATHGLPRAXXXXSPPQSTQSCTPARVSPLSACTSLPTQC 250
            T PPP    SP           T   P      SPP +T +  P   +P     S PT  
Sbjct: 1570 TTPPPTTTPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPPTTTP-----SPPTTT 1624

Query: 251  PFCRSPALARCATTQPPLSRAATHVLLHSCPPP 349
            P     +     TT PP +  +      + PPP
Sbjct: 1625 PITPPTS----TTTLPPTTTPSPPPTTTTTPPP 1653



 Score = 32.0 bits (71), Expect = 0.80
 Identities = 27/93 (29%), Positives = 35/93 (37%)
 Frame = +2

Query: 71   TWPPPLMPSSPHALPLMDLTVATHGLPRAXXXXSPPQSTQSCTPARVSPLSACTSLPTQC 250
            T PPP    SP       +T  T  LP      SPP ST +  P   +P    T   T  
Sbjct: 1430 TTPPPTTTPSP------PITTTTTPLP--TTTPSPPISTTTTPPPTTTPSPPTT---TPS 1478

Query: 251  PFCRSPALARCATTQPPLSRAATHVLLHSCPPP 349
            P   +P+     TT PP +   +  +     PP
Sbjct: 1479 PPTTTPSPPTTTTTTPPPTTTPSPPMTTPITPP 1511



 Score = 31.6 bits (70), Expect = 1.0
 Identities = 25/93 (26%), Positives = 31/93 (33%)
 Frame = +2

Query: 71   TWPPPLMPSSPHALPLMDLTVATHGLPRAXXXXSPPQSTQSCTPARVSPLSACTSLPTQC 250
            T PP   PS P       L   T   P +     PP +T S      SP +   S PT  
Sbjct: 1431 TPPPTTTPSPPITTTTTPLPTTTPSPPISTTTTPPPTTTPSPPTTTPSPPTTTPSPPTTT 1490

Query: 251  PFCRSPALARCATTQPPLSRAATHVLLHSCPPP 349
                 P      T  PP++   T     +  PP
Sbjct: 1491 TTTPPPT----TTPSPPMTTPITPPASTTTLPP 1519



 Score = 31.2 bits (69), Expect = 1.4
 Identities = 25/100 (25%), Positives = 35/100 (35%), Gaps = 6/100 (6%)
 Frame = +2

Query: 71   TWPPPLMPSSPHALPLMD------LTVATHGLPRAXXXXSPPQSTQSCTPARVSPLSACT 232
            T PP   PS P   P+        L   T   P      +PP +T   +P   +P++  T
Sbjct: 1493 TPPPTTTPSPPMTTPITPPASTTTLPPTTTPSPPTTTTTTPPPTTTP-SPPTTTPITPPT 1551

Query: 233  SLPTQCPFCRSPALARCATTQPPLSRAATHVLLHSCPPPL 352
            S  T  P           TT PP +  +        PP +
Sbjct: 1552 STTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPTI 1591



 Score = 29.6 bits (65), Expect = 4.0
 Identities = 18/74 (24%), Positives = 28/74 (37%)
 Frame = +2

Query: 77   PPPLMPSSPHALPLMDLTVATHGLPRAXXXXSPPQSTQSCTPARVSPLSACTSLPTQCPF 256
            PPP   ++P           T   P      +PP +T   +P   +P    T++ T  P 
Sbjct: 1643 PPPTTTTTPPPTTTPSPPTTTTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSP- 1701

Query: 257  CRSPALARCATTQP 298
              +P+     TT P
Sbjct: 1702 TTTPSSPITTTTTP 1715



 Score = 29.6 bits (65), Expect = 4.0
 Identities = 25/93 (26%), Positives = 30/93 (32%)
 Frame = +2

Query: 71   TWPPPLMPSSPHALPLMDLTVATHGLPRAXXXXSPPQSTQSCTPARVSPLSACTSLPTQC 250
            T PP   PS P           T   P      SPP  T +  P   +P S  T+  T  
Sbjct: 1555 TLPPTTTPSPPPTTTTTPPPTTTPS-PPTTTTPSPPTITTTTPPPTTTP-SPPTTTTTTP 1612

Query: 251  PFCRSPALARCATTQPPLSRAATHVLLHSCPPP 349
            P   +P+        PP S           PPP
Sbjct: 1613 PPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPP 1645

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>YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear protein ZAP3)|
          Length = 1386

 Score = 32.7 bits (73), Expect = 0.47
 Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = +2

Query: 77  PPPLMPSSPHALPLMDLTVAT--HGL-PRAXXXXSPPQSTQSCTPARVSPLSACTSLPTQ 247
           PPP +P  P  LPL  L+ AT   G+ P       PPQ T    PA  S  S     P Q
Sbjct: 569 PPPALPGGPPILPLPPLSSATPPPGIPPPGAPQGMPPQLTAPLPPASGSQNSQIPEKPRQ 628

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>SGS3_DROER (P13730) Salivary glue protein Sgs-3 precursor|
          Length = 328

 Score = 32.7 bits (73), Expect = 0.47
 Identities = 30/107 (28%), Positives = 41/107 (38%), Gaps = 6/107 (5%)
 Frame = +2

Query: 17  GFLLALFSFPPHGSH---RRHTWPPPLMPSSPHALPLMDLTVATHGLPRAXXXXSPPQST 187
           G LL   +   +GS     + T P P   + P   P+   T      P       PP +T
Sbjct: 11  GILLIACAHVANGSDCGCPKRTTPKPCTTARPTCAPVTTTTCR----PPTTTRCPPPTTT 66

Query: 188 QSCTPARVSPLSACTSLPTQCPFCRSP---ALARCATTQPPLSRAAT 319
           +   P R +  +A T  PT  P  R     A  + ATT+    RA T
Sbjct: 67  RCPPPTRPAECTATTKRPTARPTTRRTTVRATTKRATTRRTTKRATT 113

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>LRP1_HHV1F (P17588) Latency-related protein 1|
          Length = 340

 Score = 32.3 bits (72), Expect = 0.62
 Identities = 23/67 (34%), Positives = 27/67 (40%)
 Frame = +2

Query: 152 RAXXXXSPPQSTQSCTPARVSPLSACTSLPTQCPFCRSPALARCATTQPPLSRAATHVLL 331
           RA      P+  Q  TP    P S    LP      R+P  +   +  PPL RA T    
Sbjct: 11  RAAALWLTPEPAQHGTPTPTHPHSHAPPLP------RTPTPSHPHSRAPPLPRAPTPTHP 64

Query: 332 HSCPPPL 352
           HS  PPL
Sbjct: 65  HSHAPPL 71

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>CSKI1_HUMAN (Q8WXD9) Caskin-1 (CASK-interacting protein 1)|
          Length = 1431

 Score = 32.3 bits (72), Expect = 0.62
 Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 4/100 (4%)
 Frame = +2

Query: 62   RRHTWPPPLMPSSPHALPLMDLTVATHGLPRAXXXXSPPQSTQSCTPARVS-PLSACTSL 238
            R H  PPP+ P  P          A  GLP      SP  S     PA ++ P     SL
Sbjct: 1262 RAHGTPPPVSPKPPPPPTAPKPVKAVAGLPSGSAGPSPAPSPARQPPAALAKPPGTPPSL 1321

Query: 239  ---PTQCPFCRSPALARCATTQPPLSRAATHVLLHSCPPP 349
               P + P   +PAL      +PP + AA      + P P
Sbjct: 1322 GASPAKPPSPGAPALH--VPAKPPRAAAAAAAAAAAPPAP 1359

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>PER2_HUMAN (O15055) Period circadian protein 2|
          Length = 1255

 Score = 32.0 bits (71), Expect = 0.80
 Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 10/97 (10%)
 Frame = +2

Query: 74   WPPPLMPSSPHALPLMDLTVATHGLPRAXXXXSP-----PQSTQSCTPARVSPLSACTSL 238
            +P PL P     LP       T  LP+A     P     P  T     A      + TS+
Sbjct: 896  FPAPLAPVMAFMLPSYSFPSGTPNLPQAFFPSQPQFPSHPTLTSEMASASQPEFPSRTSI 955

Query: 239  PTQ---CPFCRSPALARCATTQPPL--SRAATHVLLH 334
            P Q   CP  R+   +      PPL  SR+++ + L+
Sbjct: 956  PRQPCACPATRATPPSAMGRASPPLFQSRSSSPLQLN 992

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>TNKS1_HUMAN (O95271) Tankyrase 1 (EC 2.4.2.30) (TANK1) (Tankyrase I) (TNKS-1)|
           (TRF1-interacting ankyrin-related ADP-ribose polymerase)
          Length = 1327

 Score = 32.0 bits (71), Expect = 0.80
 Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
 Frame = +2

Query: 77  PPPLMP--------SSPHALPLMDLTVATHGL--PRAXXXXSPPQSTQSCTPARVSPLSA 226
           PPPL P        +SP A  L       HGL  P       PP   +S  P  V   S 
Sbjct: 32  PPPLSPGLAPGTTPASPTASGLAPFASPRHGLALPEGDGSRDPPDRPRSPDP--VDGTSC 89

Query: 227 CTSLPTQCPFCRSPALARCATT 292
           C++  T C    +P +   +T+
Sbjct: 90  CSTTSTICTVAAAPVVPAVSTS 111

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>TPOR_HUMAN (P40238) Thrombopoietin receptor precursor (TPO-R)|
           (Myeloproliferative leukemia protein) (C-mpl) (CD110
           antigen)
          Length = 635

 Score = 32.0 bits (71), Expect = 0.80
 Identities = 37/115 (32%), Positives = 41/115 (35%), Gaps = 5/115 (4%)
 Frame = +2

Query: 17  GFLLALFSFPPHGSHRRHTWPPPLMPSSPHALPLMDLTVATHGLPRAXXXXSPPQSTQSC 196
           G LL  + FP H    RH     L PS P      DL        R     SPP++T S 
Sbjct: 509 GLLLLRWQFPAHYRRLRHA----LWPSLP------DLHRVLGQYLRDTAALSPPKATVSD 558

Query: 197 TPARVSPLSACTSLP-----TQCPFCRSPALARCATTQPPLSRAATHVLLHSCPP 346
           T   V P S    LP     T  P C S A       QP        + L  CPP
Sbjct: 559 TCEEVEP-SLLEILPKSSERTPLPLCSSQAQMDYRRLQP---SCLGTMPLSVCPP 609

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>WNK4_MOUSE (Q80UE6) Serine/threonine-protein kinase WNK4 (EC 2.7.11.1) (Protein|
            kinase with no lysine 4) (Protein kinase,
            lysine-deficient 4)
          Length = 1222

 Score = 32.0 bits (71), Expect = 0.80
 Identities = 28/98 (28%), Positives = 37/98 (37%), Gaps = 13/98 (13%)
 Frame = +2

Query: 74   WPPPLMP-SSPHALPLMDLTVATHGLPRAXXXXSPPQSTQSCTPARVSPLSACTSLP--- 241
            +P P+ P +SP   P     V+++  P+A     P  S+ S  P   S L     LP   
Sbjct: 817  FPCPIFPITSPSCYPCPFSQVSSNPYPQAPSSLLPLSSSASQVPLPSSSLPISAPLPFSP 876

Query: 242  ---------TQCPFCRSPALARCATTQPPLSRAATHVL 328
                     T  P C SP      T  P LS A+   L
Sbjct: 877  SYPQDPLSPTSLPVCPSPPSLPSTTAAPLLSLASAFSL 914

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>PACC_ASPFU (Q4WY67) pH-response transcription factor pacC/RIM101|
          Length = 676

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
 Frame = +2

Query: 50  HG--SHRRHTWPPPLMPSSPHALPLMDLTV-----ATHGLPRAXXXXSPPQSTQSCTPAR 208
           HG  S+R    PP  +P S HA+     +      ATH  P      +PP S QS T AR
Sbjct: 378 HGGMSYRTTHSPPTQLPPS-HAVATTSASTSMSNPATHSPPTGTPALTPPSSAQSYTSAR 436

Query: 209 VSPLS 223
            SP+S
Sbjct: 437 -SPIS 440

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>GAG_MLVFF (P26806) Gag polyprotein (Core polyprotein) [Contains: Matrix|
           protein p15; RNA-binding phosphoprotein p12; Capsid
           protein p30; Nucleocapsid protein p10]
          Length = 537

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 30/102 (29%), Positives = 39/102 (38%), Gaps = 10/102 (9%)
 Frame = +2

Query: 26  LALFSFPPHGSHRRH----TW------PPPLMPSSPHALPLMDLTVATHGLPRAXXXXSP 175
           + +FS  PHG   +     TW      PPP +    H  P + L  +   LP      +P
Sbjct: 65  IKVFSPGPHGHPDQVPYIVTWEAIAVDPPPWVRPFVHPKPPLSLPPSAPSLPPEPPLSTP 124

Query: 176 PQSTQSCTPARVSPLSACTSLPTQCPFCRSPALARCATTQPP 301
           PQS  S  PA  SPL+     P   P    P +       PP
Sbjct: 125 PQS--SLYPALTSPLNT-KPRPQVLPDSGGPLIDLLTEDPPP 163

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>EXON_HHV11 (P04294) Alkaline exonuclease (EC 3.1.11.-)|
          Length = 626

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
 Frame = +2

Query: 80  PPLMPSSPHALPLMDLTVATHGLPRAXXXXSPPQSTQSCTPARVSPLSA-----CTSLPT 244
           PP  P  P++LPL   T     LP       PPQ+T +  P+  SP++       T    
Sbjct: 33  PPKRPR-PNSLPL---TTTFRPLP------PPPQTTSAVDPSSHSPVNPPRDQHATDTAD 82

Query: 245 QCPFCRSPALARCA---TTQPPLSRAATH 322
           + P   SPAL+  +   T   PLS   TH
Sbjct: 83  EKPRAASPALSDASGPPTPDIPLSPGGTH 111

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>WASIP_RAT (Q6IN36) Wiskott-Aldrich syndrome protein-interacting protein|
           (WASP-interacting protein)
          Length = 487

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 30/99 (30%), Positives = 37/99 (37%), Gaps = 7/99 (7%)
 Frame = +2

Query: 77  PPPLMPSSPHALPL-----MDLTVATHGLPRAXXXXS-PPQSTQSCTPARVSPLSACTSL 238
           PPPL P+S   +P      + LT  T  LP        PP  T+   P    P      L
Sbjct: 304 PPPLPPTSSDEIPRLPQRNLSLTSPTPPLPSPGRSGPLPPPPTERPPPPVRDPPGRSGPL 363

Query: 239 PTQCPFCRSPALARCATTQPPL-SRAATHVLLHSCPPPL 352
           P   P  R+ + AR     P L SR+          PPL
Sbjct: 364 PPPPPINRNGSTARALPATPQLPSRSGMDSPRSGPRPPL 402

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>RGA7_SCHPO (O94466) Probable Rho-GTPase-activating protein 7|
          Length = 695

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 12/102 (11%)
 Frame = +2

Query: 77  PPPLMPSSPHALPLMDLTVATHGLPRAXXXXSPPQSTQSCTPARVSPLSAC--------- 229
           P PL  ++P      + +VA+   P +        S  S  PA  SPL++          
Sbjct: 364 PSPLQNTNPAPSTFPNPSVASPAFPNSST------SNPSTAPASASPLASTLKPSTANDT 417

Query: 230 ---TSLPTQCPFCRSPALARCATTQPPLSRAATHVLLHSCPP 346
              +S  +  P   SP LA  A  +PP+++ +  VLL + PP
Sbjct: 418 NGSSSSSSSNPRTSSP-LASNAENKPPVAQQSPPVLLPTLPP 458

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>KCNC3_RAT (Q01956) Potassium voltage-gated channel subfamily C member 3|
           (Voltage-gated potassium channel subunit Kv3.3)
           (KSHIIID)
          Length = 889

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
 Frame = +2

Query: 2   SRGEGGFLLALFSFPPHGSHRRHTWPPPLMP-----SSPHALPLMDLTVATHGLPRAXXX 166
           SR    FL+  ++  P GS R+ T  PPL P      +P A           G P +   
Sbjct: 713 SRDRACFLVTDYAPSPDGSIRKATGAPPLPPHAGVSQAPPASCPTSTPTQQPGYPPSGRA 772

Query: 167 XSPPQST 187
            SPPQ+T
Sbjct: 773 PSPPQAT 779

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>ARX_MOUSE (O35085) Homeobox protein ARX (Aristaless-related homeobox)|
          Length = 564

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 26/89 (29%), Positives = 31/89 (34%), Gaps = 3/89 (3%)
 Frame = +2

Query: 92  PSSPHALPLMDLTVATHGLPRAXXXXSPPQSTQSCTPARVSPLSACTSLPTQC---PFCR 262
           P  PH   L     A      A     PP    +  P   +PL   T L       P   
Sbjct: 420 PFPPHHPALDSAWTAAAAAAAAAFPSLPPPPGSASLPPSGAPLGLSTFLGAAVFRHPAFI 479

Query: 263 SPALARCATTQPPLSRAATHVLLHSCPPP 349
           SPA  R  +T  PL+ A+T   L   P P
Sbjct: 480 SPAFGRLFSTMAPLTSASTAAALLRQPTP 508

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>ARX_HUMAN (Q96QS3) Homeobox protein ARX (Aristaless-related homeobox)|
          Length = 562

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 26/89 (29%), Positives = 31/89 (34%), Gaps = 3/89 (3%)
 Frame = +2

Query: 92  PSSPHALPLMDLTVATHGLPRAXXXXSPPQSTQSCTPARVSPLSACTSLPTQC---PFCR 262
           P  PH   L     A      A     PP    +  P   +PL   T L       P   
Sbjct: 418 PFPPHHPALDSAWTAAAAAAAAAFPSLPPPPGSASLPPSGAPLGLSTFLGAAVFRHPAFI 477

Query: 263 SPALARCATTQPPLSRAATHVLLHSCPPP 349
           SPA  R  +T  PL+ A+T   L   P P
Sbjct: 478 SPAFGRLFSTMAPLTSASTAAALLRQPTP 506

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>SSBP3_MOUSE (Q9D032) Single-stranded DNA-binding protein 3 (Sequence-specific|
           single-stranded-DNA-binding protein) (Lck-associated
           signal transducer)
          Length = 388

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 22/67 (32%), Positives = 24/67 (35%), Gaps = 6/67 (8%)
 Frame = +2

Query: 35  FSFPPHGSHRRHTWPPPLMPSS---PHALPLMDLTVATHGLPRAXXXXSPP---QSTQSC 196
           F  PP      H  PPP  PSS   PH+ P M    A    P       PP     TQ  
Sbjct: 121 FQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPL 180

Query: 197 TPARVSP 217
            P  + P
Sbjct: 181 LPNSMDP 187

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>SSBP3_HUMAN (Q9BWW4) Single-stranded DNA-binding protein 3 (Sequence-specific|
           single-stranded-DNA-binding protein)
          Length = 388

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 22/67 (32%), Positives = 24/67 (35%), Gaps = 6/67 (8%)
 Frame = +2

Query: 35  FSFPPHGSHRRHTWPPPLMPSS---PHALPLMDLTVATHGLPRAXXXXSPP---QSTQSC 196
           F  PP      H  PPP  PSS   PH+ P M    A    P       PP     TQ  
Sbjct: 121 FQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPL 180

Query: 197 TPARVSP 217
            P  + P
Sbjct: 181 LPNSMDP 187

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>CSKI1_RAT (Q8VHK2) Caskin-1 (CASK-interacting protein 1)|
          Length = 1430

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 34/100 (34%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
 Frame = +2

Query: 62   RRHTWPPPLMPSSPHALPLMDLTVATHGLPRAXXXXSPPQSTQSCTPARV-----SPLSA 226
            R H  PPP+ P  P          A  GL  +    SP  S     PA +     SP S 
Sbjct: 1263 RAHGTPPPVSPKPPPPPTAPKPAKALAGLQSSSATPSPVPSPARQPPAALIKPASSPPSQ 1322

Query: 227  CTSLPTQCPFCRSPALARCATTQPPLSRAATHVLLHSCPP 346
              S P + P   +PAL     T+PP  RAA  V+  S PP
Sbjct: 1323 SAS-PAKPPSPGAPALQ--VPTKPP--RAAASVV--SGPP 1355

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>TMPSD_MOUSE (Q5U405) Transmembrane protease, serine 13 (EC 3.4.21.-) (Mosaic|
           serine protease) (Membrane-type mosaic serine protease)
          Length = 543

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 30/97 (30%), Positives = 40/97 (41%)
 Frame = +2

Query: 53  GSHRRHTWPPPLMPSSPHALPLMDLTVATHGLPRAXXXXSPPQSTQSCTPARVSPLSACT 232
           GSHR  +  P   P  P A P    T      P+A    +PPQ++ + TP + SP  A  
Sbjct: 4   GSHRNSS--PARTP--PQASPAR--TSPARAPPQASPARTPPQASPARTPPQASPARA-- 55

Query: 233 SLPTQCPFCRSPALARCATTQPPLSRAATHVLLHSCP 343
             P   P   SPA A  + +    S +A      S P
Sbjct: 56  PPPQASPARASPARAPPSRSSSGRSSSARSASTTSSP 92

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>KIF12_MOUSE (Q9D2Z8) Kinesin-like protein KIF12|
          Length = 642

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 28/90 (31%), Positives = 33/90 (36%), Gaps = 15/90 (16%)
 Frame = +2

Query: 125 LTVATHGLPRAXXXXSP-PQ--STQSCTPARVSPLSACTSLPTQ------CPFCRSPAL- 274
           L    H L R      P PQ  ST  C P R+ P ++C +LP        CP CR P   
Sbjct: 453 LAQQVHDLERRLLSACPLPQQGSTPVC-PCRMVPAASCHALPPLCYCHHFCPLCRVPLAH 511

Query: 275 -----ARCATTQPPLSRAATHVLLHSCPPP 349
                  C   Q     A  H+     PPP
Sbjct: 512 WTCPRRECHMPQVLEPEAPGHISQSVWPPP 541

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>HXA3_MOUSE (P02831) Homeobox protein Hox-A3 (Hox-1.5) (MO-10)|
          Length = 443

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 21/65 (32%), Positives = 25/65 (38%)
 Frame = +2

Query: 80  PPLMPSSPHALPLMDLTVATHGLPRAXXXXSPPQSTQSCTPARVSPLSACTSLPTQCPFC 259
           PPL P  P A P           P A    +PP       P+ VSP  +  S PT     
Sbjct: 89  PPLPPPPPQAAPPAPQPPQPPPQPPAPTPAAPPP------PSSVSPPQSANSNPTPASTA 142

Query: 260 RSPAL 274
           +SP L
Sbjct: 143 KSPLL 147

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>PI5PA_MOUSE (P59644) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC|
           3.1.3.56)
          Length = 1003

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 23/78 (29%), Positives = 31/78 (39%)
 Frame = +2

Query: 80  PPLMPSSPHALPLMDLTVATHGLPRAXXXXSPPQSTQSCTPARVSPLSACTSLPTQCPFC 259
           PP  PSSP  +P   L+ +  G   A    S P S +   PAR    +     P      
Sbjct: 196 PPQSPSSPSPVPSPVLSPSQEGHLAAASVTSTPASERQ-LPARQKDTAVPRPTPPADKCL 254

Query: 260 RSPALARCATTQPPLSRA 313
            +P  A    T PP ++A
Sbjct: 255 YTPERAAGPATSPPRAQA 272

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>GAG_MLVFP (P26805) Gag polyprotein (Core polyprotein) [Contains: Matrix|
           protein p15; RNA-binding phosphoprotein p12; Capsid
           protein p30; Nucleocapsid protein p10]
          Length = 537

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 30/102 (29%), Positives = 39/102 (38%), Gaps = 10/102 (9%)
 Frame = +2

Query: 26  LALFSFPPHGSHRRH----TW------PPPLMPSSPHALPLMDLTVATHGLPRAXXXXSP 175
           + +FS  PHG   +     TW      PPP +    H  P + L  +   LP      +P
Sbjct: 65  IKVFSPGPHGHPDQVPYIVTWEALAVDPPPWVKPFVHPKPPLLLPPSAPSLPPEPPLSTP 124

Query: 176 PQSTQSCTPARVSPLSACTSLPTQCPFCRSPALARCATTQPP 301
           PQS  S  PA  SPL+     P   P    P +       PP
Sbjct: 125 PQS--SLYPALTSPLNT-KPRPQVLPDSGGPLIDLLTEDPPP 163

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>AGRN_CHICK (P31696) Agrin (Fragment)|
          Length = 1955

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 27/99 (27%), Positives = 38/99 (38%)
 Frame = +2

Query: 56   SHRRHTWPPPLMPSSPHALPLMDLTVATHGLPRAXXXXSPPQSTQSCTPARVSPLSACTS 235
            +H  HT PP  +P+    LPL  L V     P        P+ T+  T + +   S  T 
Sbjct: 856  THTSHTMPPTPLPT----LPLDKLIVP----PPLQLTTQAPEPTELATTSLLMEASPTTR 907

Query: 236  LPTQCPFCRSPALARCATTQPPLSRAATHVLLHSCPPPL 352
                      P   R  TT+P  +   TH +L +   PL
Sbjct: 908  --------SHPTTRRVTTTRPVTTPWMTHGVLKTTVRPL 938

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>WSP1_SCHPO (O36027) Wiskott-Aldrich syndrome homolog protein 1|
          Length = 574

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 2/93 (2%)
 Frame = +2

Query: 44  PPHGSHRRHTWPPPLMPSSPHALPLMDLTVATHGLPRAXXXXSPP--QSTQSCTPARVSP 217
           PP  +      PPPL  S   + P          +P       PP   ++++ TP   +P
Sbjct: 365 PPRSAPSTGRQPPPLSSSRAVSNP----PAPPPAIPGRSAPALPPLGNASRTSTPPVPTP 420

Query: 218 LSACTSLPTQCPFCRSPALARCATTQPPLSRAA 316
            S   S P   P    P+L   A   PPL  +A
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSA 453



 Score = 29.6 bits (65), Expect = 4.0
 Identities = 20/56 (35%), Positives = 26/56 (46%)
 Frame = +2

Query: 80  PPLMPSSPHALPLMDLTVATHGLPRAXXXXSPPQSTQSCTPARVSPLSACTSLPTQ 247
           PPL PS+P A PL     A   LP A      P    +  PA  +P+++   LP Q
Sbjct: 447 PPLPPSAPIAPPLPAGMPAAPPLPPAA-----PAPPPAPAPAPAAPVASIAELPQQ 497

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>EXTN1_ARATH (Q38913) Extensin-1 precursor (AtExt1) (AtExt4)|
          Length = 373

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 26/92 (28%), Positives = 32/92 (34%), Gaps = 1/92 (1%)
 Frame = +2

Query: 77  PPPLMPSSPHALPLMDLTVATHGLPRAXXXXSPPQSTQSCTP-ARVSPLSACTSLPTQCP 253
           PPP+  S P  +      V  H  P       PP    S  P    SP       P   P
Sbjct: 235 PPPVYKSPPPPVHYSPPPVVYHSPPPPVHYSPPPVVYHSPPPPVHYSPPPVVYHSPPP-P 293

Query: 254 FCRSPALARCATTQPPLSRAATHVLLHSCPPP 349
              SP      +  PP+  +   V+ HS PPP
Sbjct: 294 VHYSPPPVVYHSPPPPVHYSPPPVVYHSPPPP 325

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>ZN672_RAT (Q642B2) Zinc finger protein 672|
          Length = 468

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = +2

Query: 92  PSSPHALPLMDLTVATHGLPRAXXXXSPPQSTQSCTPARVSPLSACTSLP 241
           P  PH  PL   +     LP       PP++T +  PA  S L  CT  P
Sbjct: 125 PEKPHRCPLCARSFRQSALPFHLARAHPPETTIATAPA-PSTLYHCTQCP 173

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>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich|
           glycoprotein)
          Length = 620

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 30/99 (30%), Positives = 35/99 (35%), Gaps = 3/99 (3%)
 Frame = +2

Query: 77  PPPLMPSSPHALPLMDLTVATHGLPRAXXXXSPPQSTQSCTPARVSPLSACTSLPTQCPF 256
           PPP    SP   P       T+  P       PP    S  P   SP    T  PT  P 
Sbjct: 268 PPPAYAQSPQPSP-------TYSPPPPTYSPPPPSPIYSPPPPAYSPSPPPTPTPTFSP- 319

Query: 257 CRSPALARCATTQPPLSRAATHVLLHSCP---PPLMAFS 364
              PA +   T  PP     T++ L S P   PP   +S
Sbjct: 320 -PPPAYSPPPTYSPP---PPTYLPLPSSPIYSPPPPVYS 354

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>FRAS1_MOUSE (Q80T14) Extracellular matrix protein FRAS1 precursor|
          Length = 4010

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 20/79 (25%), Positives = 25/79 (31%), Gaps = 20/79 (25%)
 Frame = +2

Query: 179 QSTQSCTPARVSP-LSACTSLPTQCPFCRSP-------------------ALARCATTQP 298
           Q    CTP    P    C+  P  C  C+ P                   A + C   QP
Sbjct: 410 QCCPDCTPVHCHPDCLTCSHSPDHCDLCQDPTKLLQNGRCVHSCGLGFYQAGSLCLACQP 469

Query: 299 PLSRAATHVLLHSCPPPLM 355
             S     +   SC PPL+
Sbjct: 470 QCSTCTNGLECSSCLPPLL 488

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>TNR1A_BOVIN (O19131) Tumor necrosis factor receptor superfamily member 1A|
           precursor (p60) (TNF-R1) (TNF-RI) (TNFR-I) (p55)
          Length = 471

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
 Frame = +2

Query: 38  SFPPHGSHRRHTWPPPLMPSSPHALPLMDLTVATHGLPRAXXXXSP--PQSTQSCTPARV 211
           S PP+ S  R  +     PSS  A P +       G P +    +P  P ST  CTP   
Sbjct: 285 SIPPYISCDRSNFGAVASPSSETAPPHLKAGPILPGPPASTHLCTPGPPASTHLCTPGPP 344

Query: 212 SPLSACT 232
           +    CT
Sbjct: 345 ASTHLCT 351

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>GP10_DICDI (Q06885) Glycoprotein gp100 precursor (P29F8)|
          Length = 544

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 19/75 (25%), Positives = 27/75 (36%)
 Frame = +2

Query: 77  PPPLMPSSPHALPLMDLTVATHGLPRAXXXXSPPQSTQSCTPARVSPLSACTSLPTQCPF 256
           P P   S P + P    +  +  +P       PPQ+T   +    +P    T  PT  P 
Sbjct: 120 PTPTPTSKPTSTPT---STPSQTIPPTVSPTVPPQTTSPTSKPTSTPTPTSTPTPTSTPT 176

Query: 257 CRSPALARCATTQPP 301
             S  +    TT  P
Sbjct: 177 PTSQTIPPPTTTPKP 191

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>CSPG2_HUMAN (P13611) Versican core protein precursor (Large fibroblast|
            proteoglycan) (Chondroitin sulfate proteoglycan core
            protein 2) (PG-M) (Glial hyaluronate-binding protein)
            (GHAP)
          Length = 3396

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +2

Query: 71   TWPPPLMPSSPHALPLMDLTVATHGLPRAXXXXSPPQSTQSCTPARVSPLSACTSLP 241
            T+ P ++PSS  A    +  V   G P      S  +S    TP +V  LS  +S+P
Sbjct: 1581 TYTPTIVPSSASAYVSEEEAVTLIGNPWPDDLLSTKESWVEATPRQVVELSGSSSIP 1637

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>SNPC4_HUMAN (Q5SXM2) snRNA-activating protein complex subunit 4 (SNAPc subunit 4)|
            (snRNA-activating protein complex 190 kDa subunit) (SNAPc
            190 kDa subunit) (Proximal sequence element-binding
            transcription factor alpha subunit) (PSE-binding factor
            alpha
          Length = 1469

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
 Frame = +2

Query: 83   PLMPSSPHALP-----LMDLTVATHGLPRAXXXXSPPQSTQSCTPARVSPLSACTSLPTQ 247
            P +P +PH  P     ++++ ++  G P A    +     ++ T A+   LS   +LP  
Sbjct: 931  PPLPHTPHGRPAPGPTVLNVPLSGPGAPAAAKPGTSGSWQEAGTSAKDKRLSTMQALPLA 990

Query: 248  CPFCRSPALARCATTQPPLSRAATHVLLHSCP 343
              F  +   A  A+  P L      V   SCP
Sbjct: 991  PVFSEAEGTAPAASQAPALGPGQISV---SCP 1019

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>PRDM2_RAT (Q63755) PR domain zinc finger protein 2 (PR domain-containing|
            protein 2) (Retinoblastoma protein-interacting
            zinc-finger protein) (Zinc finger protein RIZ)
          Length = 1706

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 4/102 (3%)
 Frame = +2

Query: 71   TWPPPLMPSSPHALPLMDLTVATHGLPRAXXXXSPP----QSTQSCTPARVSPLSACTSL 238
            T PPPL+P+ P + P  D +      P +      P      T S +P+ + P+    S 
Sbjct: 976  TPPPPLLPTVPLSHPSSDASPQQCPSPFSNTTAQSPLPILSPTVSPSPSPIPPVEPLMSA 1035

Query: 239  PTQCPFCRSPALARCATTQPPLSRAATHVLLHSCPPPLMAFS 364
             +  P    P L+  +++      ++      S PPPL A S
Sbjct: 1036 ASPGP----PTLSSSSSSSSSFPSSSCSSTSPS-PPPLSAVS 1072

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>WEB1_YEAST (P38968) Protein WEB1 (Protein transport protein SEC31)|
          Length = 1273

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +2

Query: 200  PARVSPLSACTS--LPTQCPFCRSPALARCATTQPPLSRAATHVLLHSCPPPL 352
            P+R   +S      L T  P    PA A      PPLSRA + V + S PPPL
Sbjct: 933  PSRAKAVSVAPPNILSTPTPLNGIPANAASTMPPPPLSRAPSSVSMVS-PPPL 984

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>RX_DROME (Q9W2Q1) Retinal homeobox protein Rx (DRx1) (DRx)|
          Length = 873

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 44  PPHGSHRRHTWPPPLMPSSPHALP 115
           PPH  H  H  P P  P  PH +P
Sbjct: 672 PPHVGHGGHGQPQPPPPPPPHGVP 695

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>DNL4_PONPY (Q5R6L3) DNA ligase 4 (EC 6.5.1.1) (DNA ligase IV)|
           (Polydeoxyribonucleotide synthase [ATP] 4)
          Length = 911

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 363 RLVLPSLDCERGSYGLKEAALVE 431
           RL+LP L+ ER +YG+KE  L +
Sbjct: 69  RLILPQLERERMAYGIKETMLAK 91

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>DNL4_MOUSE (Q8BTF7) DNA ligase 4 (EC 6.5.1.1) (DNA ligase IV)|
           (Polydeoxyribonucleotide synthase [ATP] 4)
          Length = 911

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 363 RLVLPSLDCERGSYGLKEAALVE 431
           RL+LP L+ ER +YG+KE  L +
Sbjct: 69  RLILPQLERERMAYGIKETMLAK 91

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>DNL4_HUMAN (P49917) DNA ligase 4 (EC 6.5.1.1) (DNA ligase IV)|
           (Polydeoxyribonucleotide synthase [ATP] 4)
          Length = 911

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 363 RLVLPSLDCERGSYGLKEAALVE 431
           RL+LP L+ ER +YG+KE  L +
Sbjct: 69  RLILPQLERERMAYGIKETMLAK 91

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>NU5M_HYLLA (P03919) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 5)
          Length = 603

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +2

Query: 8   GEGGFLLALFSFPPHGSHRRHTWPPP---LMPSSPHALPLMDLTVATHG 145
           G+ GF+LAL  F  H     ++W P    L+ S+P+ LPL  L +A  G
Sbjct: 178 GDIGFILALAWFLLH----TNSWEPQQMILLNSNPNFLPLAGLLLAARG 222

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>DNL4_CHICK (Q90YB1) DNA ligase 4 (EC 6.5.1.1) (DNA ligase IV)|
           (Polydeoxyribonucleotide synthase [ATP] 4)
          Length = 912

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 363 RLVLPSLDCERGSYGLKEAALVE 431
           RL+LP L+ ER +YG+KE  L +
Sbjct: 74  RLILPQLERERMAYGIKETMLAK 96

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>V70K_TYMV (P10357) 69 kDa protein|
          Length = 628

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
 Frame = +2

Query: 65  RHTWPPPLMPSSPHALPLMDLTVAT----HGLPRAX----XXXSPPQSTQSCTPARVSPL 220
           RH  P PL+P+ P ALP +  T +     H LP+          PP+   S  P    PL
Sbjct: 394 RHRRPYPLLPNPPAALPSIAYTSSRGKIHHSLPKGALPKEGAPPPPRRLPSPAPRPQLPL 453

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>WASIP_MOUSE (Q8K1I7) Wiskott-Aldrich syndrome protein-interacting protein|
           (WASP-interacting protein)
          Length = 493

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 32/111 (28%), Positives = 40/111 (36%), Gaps = 8/111 (7%)
 Frame = +2

Query: 44  PPHGSHRRHTWPPPLMPSSPHALPL-----MDLTVATHGLPRAXXX--XSPPQSTQSCTP 202
           PP         PPPL P+S   +P      + LT +   LP         PP S +   P
Sbjct: 299 PPPPPPPSRPGPPPLPPASNDEIPRLPQRNLSLTSSAPPLPSPGRSGPLPPPPSERPPPP 358

Query: 203 ARVSPLSACTSLPTQCPFCRSPALARCATTQPPL-SRAATHVLLHSCPPPL 352
            R  P      LP   P  R+ + AR     P L SR+          PPL
Sbjct: 359 VR-DPPGRSGPLPPPPPINRNGSTARALPATPQLPSRSGMDSPRSGPRPPL 408

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>DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-related formin-1)|
           (DRF1)
          Length = 1248

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 30/105 (28%), Positives = 38/105 (36%), Gaps = 2/105 (1%)
 Frame = +2

Query: 44  PPHGSHRRHTWPPPLMPSSPHALPLMDLTVATHGLPRAXXXX--SPPQSTQSCTPARVSP 217
           PP  +    T PPP  P  P   PL   T  +   P +       PP   +       S 
Sbjct: 588 PPPPAPGDSTTPPPPPPPPPPPPPLPGGTAISPPPPLSGDATIPPPPPLPEGVGIPSPSS 647

Query: 218 LSACTSLPTQCPFCRSPALARCATTQPPLSRAATHVLLHSCPPPL 352
           L   T++P   P    P  AR     PPL  +A    +   PPPL
Sbjct: 648 LPGGTAIPPPPPL---PGSARIPPPPPPLPGSAG---IPPPPPPL 686

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>NIFA_AZOCA (P09133) Nif-specific regulatory protein|
          Length = 615

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
 Frame = +2

Query: 77  PPPLMPSSPHA-LPLMDLTVATHGLPRAXXXXSPPQSTQSCTPARVSPLSACTSLPTQCP 253
           P P+MP  P A  PL  L+               P    +  PA  SP  A  SLP  CP
Sbjct: 514 PKPVMPHVPPAPTPLTPLS---------------PAPLATAAPAAASPAPAADSLPVTCP 558

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>TPOR_MOUSE (Q08351) Thrombopoietin receptor precursor (TPO-R)|
           (Myeloproliferative leukemia protein) (C-mpl) (CD110
           antigen)
          Length = 625

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 33/128 (25%), Positives = 41/128 (32%), Gaps = 18/128 (14%)
 Frame = +2

Query: 17  GFLLALFSFPPHGSHRRHT-WPPPLMPSSPHALPLMDLTVATHGLPRAXXXXSPPQSTQS 193
           G LL  + FP H    RH  WP         +LP +   +  +    A    S    T S
Sbjct: 500 GLLLLKWQFPAHYRRLRHALWP---------SLPDLHRVLGQYLRDTAALSPSKATVTDS 550

Query: 194 CTPARVS------------PLSACTSLPTQ-----CPFCRSPALARCATTQPPLSRAATH 322
           C     S            PL  C S P        P  R+  L+ C       S   TH
Sbjct: 551 CEEVEPSLLEILPKSSESTPLPLCPSQPQMDYRGLQPCLRTMPLSVCPPMAETGSCCTTH 610

Query: 323 VLLHSCPP 346
           +  HS  P
Sbjct: 611 IANHSYLP 618

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>MPL_MPLV (P40931) Myeloproliferative leukemia protein|
          Length = 184

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 33/128 (25%), Positives = 41/128 (32%), Gaps = 18/128 (14%)
 Frame = +2

Query: 17  GFLLALFSFPPHGSHRRHT-WPPPLMPSSPHALPLMDLTVATHGLPRAXXXXSPPQSTQS 193
           G LL  + FP H    RH  WP         +LP +   +  +    A    S    T S
Sbjct: 61  GLLLLKWQFPAHYRRLRHALWP---------SLPDLHRVLGQYLRDTAALSPSKATVTDS 111

Query: 194 CTPARVS------------PLSACTSLPTQ-----CPFCRSPALARCATTQPPLSRAATH 322
           C     S            PL  C S P        P  R+  L+ C       S   TH
Sbjct: 112 CEEVEPSLLEILPKSSESTPLPLCPSQPQMDYRGLQPCLRTMPLSVCPPMAETGSCCTTH 171

Query: 323 VLLHSCPP 346
           +  HS  P
Sbjct: 172 IANHSYLP 179

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>MNT_HUMAN (Q99583) Max-binding protein MNT (Protein ROX) (Myc antagonist MNT)|
          Length = 582

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 23/76 (30%), Positives = 27/76 (35%), Gaps = 2/76 (2%)
 Frame = +2

Query: 77  PPPLMPSSPHALPLMDLTVATHGLPRAXXXXSP--PQSTQSCTPARVSPLSACTSLPTQC 250
           PPP +P++   LPL     A  G P          P   Q  TPA + P S  T  P   
Sbjct: 103 PPPPLPAAAQPLPLAPRQPALVGAPGLSIKEPAPLPSRPQVPTPAPLLPDSKATIPPNGS 162

Query: 251 PFCRSPALARCATTQP 298
           P    P      T  P
Sbjct: 163 PKPLQPLPTPVLTIAP 178

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>PO121_MOUSE (Q8K3Z9) Nuclear envelope pore membrane protein POM 121 (Pore|
           membrane protein of 121 kDa)
          Length = 1200

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 30/105 (28%), Positives = 40/105 (38%), Gaps = 15/105 (14%)
 Frame = +2

Query: 89  MPSSPHALPLMDLTVATHGLPRAXXXXSPPQSTQSC-TP------ARVSPLSACTSLPTQ 247
           + S+    PL D    + G+ +A    S P ST S  TP        +SP ++ +SL T 
Sbjct: 635 LASASSITPLTDSK--SSGVSQAEQSVSTPASTASSPTPKPSMLFGMLSPPASSSSLATP 692

Query: 248 CPFCRSPALARCATTQP--------PLSRAATHVLLHSCPPPLMA 358
            P C SP         P        P S +A      S  PP  A
Sbjct: 693 APACASPMFKPIFPATPKSESDSPLPSSSSAATTASSSTAPPTAA 737

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>GP124_HUMAN (Q96PE1) Probable G-protein coupled receptor 124 precursor (Tumor|
            endothelial marker 5)
          Length = 1331

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
 Frame = +2

Query: 8    GEGGFLLALFSFPPHGSHRRH---TWP---PPLMPSSPHALPLMDLTVATHGLPRAXXXX 169
            G     L LF F  H + RR    +W    PP  P++PHA P      A  G P      
Sbjct: 1048 GVAASALGLFVFTHHCARRRDVRASWRACCPPASPAAPHAPPRALPAAAEDGSP--VFGE 1105

Query: 170  SPPQSTQSCTPARVSPLS 223
             PP    S + +   PL+
Sbjct: 1106 GPPSLKSSPSGSSGHPLA 1123

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>HUNB_DROOR (O62537) Protein hunchback|
          Length = 767

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 20/76 (26%), Positives = 30/76 (39%)
 Frame = +2

Query: 80  PPLMPSSPHALPLMDLTVATHGLPRAXXXXSPPQSTQSCTPARVSPLSACTSLPTQCPFC 259
           P    + P   P   L+ A  G P      +PP +     P  VSP  +  S+       
Sbjct: 409 PQQQQTQPTQPPTSQLSAALQGFPLVQSNSAPP-AASPLLPLPVSPAKSVASVE------ 461

Query: 260 RSPALARCATTQPPLS 307
           ++P+L   A   PPL+
Sbjct: 462 QTPSLPSPANLLPPLA 477

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>CSKI1_MOUSE (Q6P9K8) Caskin-1 (CASK-interacting protein 1)|
          Length = 1431

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 33/100 (33%), Positives = 40/100 (40%), Gaps = 5/100 (5%)
 Frame = +2

Query: 62   RRHTWPPPLMPSSPHALPLMDLTVATHGLPRAXXXXSPPQSTQSCTPARV-----SPLSA 226
            R H  PPP+ P  P          A  GL  +    SP  S     PA +     SP S 
Sbjct: 1264 RAHGTPPPVSPKPPPPPTAPKPAKALAGLQSSSATPSPVPSPARQPPAALIKPASSPPSQ 1323

Query: 227  CTSLPTQCPFCRSPALARCATTQPPLSRAATHVLLHSCPP 346
              S P + P   +PAL      +PP  RAA  V+  S PP
Sbjct: 1324 SAS-PVKPPSPGTPALH--VPAKPP--RAAASVV--SGPP 1356

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>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)|
            (High molecular weight salivary mucin MG1) (Sublingual
            gland mucin)
          Length = 5703

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 37/117 (31%), Positives = 46/117 (39%), Gaps = 17/117 (14%)
 Frame = +2

Query: 44   PPHGSHRRHTWPPPLMPSSPHALPLMDLTVATHGL--------PRAXXXXSPPQ---STQ 190
            PP  +    T    L PSSPH +P    T AT G+        P      +P     +TQ
Sbjct: 3415 PPVPNTTATTHGRSLPPSSPHTVPTA-WTSATSGILGTTHITEPSTGTSHTPAATTGTTQ 3473

Query: 191  SCTPARVSP-LSACTSLPTQCPFCRSPALAR-----CATTQPPLSRAATHVLLHSCP 343
              TPA  SP  S+ T+     P   +P   R      AT  P  S+  T  LL S P
Sbjct: 3474 PSTPALSSPHPSSRTTESPPSPGTTTPGHTRGTSRTTATATP--SKTRTSTLLPSSP 3528

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>CBP_HUMAN (Q92793) CREB-binding protein (EC 2.3.1.48)|
          Length = 2442

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 12/99 (12%)
 Frame = +2

Query: 65   RHTWPPPLMPSSPHALPLMDLTVATHG-----LPRAXXXXSPPQSTQSCTPARVSPLSAC 229
            +HT PP + P  P A       V++ G      P +    +  QST +   A  + ++  
Sbjct: 870  QHTTPPGMTPPQPAAPTQPSTPVSSSGQTPTPTPGSVPSATQTQSTPTVQAAAQAQVTPQ 929

Query: 230  TSLPTQCPFCRSPALARCATT----QP---PLSRAATHV 325
               P Q P   +P  ++   T    QP   PLS+AA  +
Sbjct: 930  PQTPVQPPSVATPQSSQQQPTPVHAQPPGTPLSQAAASI 968


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,404,955
Number of Sequences: 219361
Number of extensions: 843981
Number of successful extensions: 3260
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 2940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3224
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result