Clone Information

BLAST Search Result

Clone Name	bastl43c05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	76	1e-10
2	gb\|AC145480.2\| Genomic sequence for Oryza sativa, Nipponbare str...	76	1e-10
3	gb\|AC116426.1\| Genomic sequence for Oryza sativa, Nipponbare str...	76	1e-10
4	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	76	1e-10
5	ref\|XM_473806.1\| Oryza sativa (japonica cultivar-group), predic...	64	4e-07
6	emb\|AL662968.3\|OSJN00168 Oryza sativa genomic DNA, chromosome 4,...	64	4e-07
7	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	64	4e-07
8	emb\|CR936257.1\| Natronomonas pharaonis DSM 2160 complete genome	46	0.10
9	emb\|AL136531.16\| Human DNA sequence from clone RP11-314N13 on ch...	44	0.41
10	gb\|AC108451.9\| Homo sapiens chromosome 15, clone RP11-379K22, co...	44	0.41
11	gb\|AC016705.4\|AC016705 Homo sapiens BAC clone RP11-210M15 from 1...	44	0.41
12	gb\|AC114667.12\| Mus musculus chromosome 1, clone RP24-175L10, co...	42	1.6
13	ref\|XM_597877.2\| PREDICTED: Bos taurus similar to ADAM metallope...	42	1.6
14	gb\|CP000271.1\| Burkholderia xenovorans LB400 chromosome 2, compl...	42	1.6
15	gb\|CP000089.1\| Dechloromonas aromatica RCB, complete genome	42	1.6
16	gb\|AC107905.5\| Homo sapiens chromosome 15, clone CTD-2026J24, co...	42	1.6
17	gb\|AC154295.2\| Mus musculus BAC clone RP23-431G3 from chromosome...	42	1.6
18	gb\|AE004755.1\| Pseudomonas aeruginosa PAO1, section 316 of 529 o...	42	1.6
19	dbj\|AP003025.2\| Homo sapiens genomic DNA, chromosome 11q, clone:...	42	1.6
20	gb\|AE016825.1\| Chromobacterium violaceum ATCC 12472, complete ge...	42	1.6
21	ref\|XM_584695.2\| PREDICTED: Bos taurus similar to DNA-damage ind...	40	6.3
22	ref\|XM_415940.1\| PREDICTED: Gallus gallus similar to hypothetica...	40	6.3
23	gb\|AC087841.4\| Mus musculus strain C57BL6/J chromosome 6 clone R...	40	6.3
24	gb\|AE016853.1\| Pseudomonas syringae pv. tomato str. DC3000 compl...	40	6.3
25	emb\|CR792443.13\| Zebrafish DNA sequence from clone DKEY-52K1 in ...	40	6.3
26	gb\|AC121581.3\| Mus musculus BAC clone RP23-256O22 from chromosom...	40	6.3
27	gb\|AC132588.4\| Mus musculus BAC clone RP24-258L16 from chromosom...	40	6.3
28	ref\|XM_811140.1\| Trypanosoma cruzi strain CL Brener trans-sialid...	40	6.3
29	emb\|AL590708.18\| Human DNA sequence from clone RP11-395P17 on ch...	40	6.3
30	emb\|AL359815.26\| Human DNA sequence from clone RP11-63N8 on chro...	40	6.3
31	emb\|AL360076.9\| Human DNA sequence from clone RP13-469L5 on chro...	40	6.3
32	gb\|AF161269.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.3
33	emb\|AL355863.18\| Human DNA sequence from clone RP11-479A21 on ch...	40	6.3
34	emb\|AL354916.16\| Human DNA sequence from clone RP11-26K22 on chr...	40	6.3
35	emb\|AL136167.8\| Human DNA sequence from clone RP1-299I16 on chro...	40	6.3
36	gb\|AC026512.6\| Homo sapiens chromosome 15, clone RP11-375D9, com...	40	6.3
37	dbj\|AP008232.1\| Sodalis glossinidius str. 'morsitans' DNA, compl...	40	6.3
38	gb\|DQ428694.1\| Sorghum propinquum locus pSB0030 genomic sequence	40	6.3
39	gb\|AC020980.6\| Homo sapiens chromosome 5 clone RPCI-1_167G20, co...	40	6.3
40	gb\|AC182764.2\| Gallus gallus BAC clone CH261-140B3 from chromoso...	40	6.3
41	ref\|XM_687059.1\| PREDICTED: Danio rerio similar to zinc finger p...	40	6.3
42	ref\|XM_686745.1\| PREDICTED: Danio rerio similar to zinc finger p...	40	6.3
43	gb\|CP000248.1\| Novosphingobium aromaticivorans DSM 12444, comple...	40	6.3
44	gb\|AC022113.6\| Homo sapiens chromosome 5 clone CTC-461F20, compl...	40	6.3
45	gb\|AC158242.4\| Pan troglodytes BAC clone CH251-354C10 from chrom...	40	6.3
46	emb\|AL929441.37\| Mouse DNA sequence from clone RP23-418E20 on ch...	40	6.3
47	gb\|BC111200.1\| Bos taurus cDNA clone MGC:134410 IMAGE:8056282, c...	40	6.3
48	gb\|AC160409.6\| Mus musculus 10 BAC RP23-184O11 (Roswell Park Can...	40	6.3
49	emb\|AL954383.13\| Zebrafish DNA sequence from clone CH211-226M11 ...	40	6.3
50	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.3
51	gb\|AC008625.5\|AC008625 Homo sapiens chromosome 5 clone CTB-157D1...	40	6.3
52	gb\|AE017282.2\| Methylococcus capsulatus str. Bath, complete genome	40	6.3
53	gb\|AC092636.3\| Homo sapiens BAC clone RP11-353K11 from 2, comple...	40	6.3
54	gb\|CP000157.1\| Erythrobacter litoralis HTCC2594, complete genome	40	6.3
55	gb\|M91456.1\|PIGRYR1 Sus scrofa strain Yorkshire ryanodine recept...	40	6.3
56	gb\|AC116769.11\| Mus musculus chromosome 15, clone RP23-415L16, c...	40	6.3
57	gb\|AF119222.1\|AF119222 Oryza sativa BAC clone 1.H19, complete se...	40	6.3
58	gb\|AF128457.1\|AF128457 Oryza sativa subsp. indica BAC clone 16F1...	40	6.3
59	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.3
60	emb\|AL935174.11\| Zebrafish DNA sequence from clone CH211-195B21 ...	40	6.3
61	emb\|AL806523.14\| Mouse DNA sequence from clone RP23-423O7 on chr...	40	6.3
62	emb\|AL732470.7\| Mouse DNA sequence from clone RP23-38D3 on chrom...	40	6.3
63	emb\|X65502.1\|SSRYR19 S.scrofa ryr1 gene for ryanodine receptor, ...	40	6.3
64	emb\|Z49778.1\|SSCRCRYR1 S.scrofa gene for skeletal muscle ryanodi...	40	6.3
65	emb\|X68247.1\|SSCRCP S.scrofa CRC (RYR1) gene for calcium release...	40	6.3
66	dbj\|AP002815.3\| Homo sapiens genomic DNA, chromosome 11q, clone:...	40	6.3

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                           
Query: 233     tcgctgccgacgcagtgccccttctgtcgctcccccgcgctggcgcggtgcgccaccacg 292
               |||| ||||||||||||||||| ||| ||| || |||  | |||||| |||| ||| |||
Sbjct: 5053201 tcgcagccgacgcagtgcccctactgccgcgcctccggcccggcgcgctgcgtcacgacg 5053142

                                     
Query: 293     cagccgccgctctcccgcgccg 314
               ||||||||||||||||||||||
Sbjct: 5053141 cagccgccgctctcccgcgccg 5053120

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>gb|AC145480.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNAa0064E16, from chromosome 3, complete sequence
          Length = 139123

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                          
Query: 233    tcgctgccgacgcagtgccccttctgtcgctcccccgcgctggcgcggtgcgccaccacg 292
              |||| ||||||||||||||||| ||| ||| || |||  | |||||| |||| ||| |||
Sbjct: 117655 tcgcagccgacgcagtgcccctactgccgcgcctccggcccggcgcgctgcgtcacgacg 117596

                                    
Query: 293    cagccgccgctctcccgcgccg 314
              ||||||||||||||||||||||
Sbjct: 117595 cagccgccgctctcccgcgccg 117574

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>gb|AC116426.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0058P18, from chromosome 3, complete sequence
          Length = 155037

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 71/82 (86%)
 Strand = Plus / Plus

                                                                          
Query: 233    tcgctgccgacgcagtgccccttctgtcgctcccccgcgctggcgcggtgcgccaccacg 292
              |||| ||||||||||||||||| ||| ||| || |||  | |||||| |||| ||| |||
Sbjct: 116506 tcgcagccgacgcagtgcccctactgccgcgcctccggcccggcgcgctgcgtcacgacg 116565

                                    
Query: 293    cagccgccgctctcccgcgccg 314
              ||||||||||||||||||||||
Sbjct: 116566 cagccgccgctctcccgcgccg 116587

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                           
Query: 233     tcgctgccgacgcagtgccccttctgtcgctcccccgcgctggcgcggtgcgccaccacg 292
               |||| ||||||||||||||||| ||| ||| || |||  | |||||| |||| ||| |||
Sbjct: 5052416 tcgcagccgacgcagtgcccctactgccgcgcctccggcccggcgcgctgcgtcacgacg 5052357

                                     
Query: 293     cagccgccgctctcccgcgccg 314
               ||||||||||||||||||||||
Sbjct: 5052356 cagccgccgctctcccgcgccg 5052335

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>ref|XM_473806.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3969

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                       
Query: 363 cgcctcgtcctcccgtccctcgactgcgagcgcggctcctacggcctcaaggaggccgcc 422
           |||||||| ||||||   |||||| ||||||||||||| ||||| |||||||||||||| 
Sbjct: 151 cgcctcgtgctcccggggctcgaccgcgagcgcggctcgtacgggctcaaggaggccgcg 210

               
Query: 423 ctcg 426
           ||||
Sbjct: 211 ctcg 214

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>emb|AL662968.3|OSJN00168 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0035M09,
             complete sequence
          Length = 152732

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                         
Query: 363   cgcctcgtcctcccgtccctcgactgcgagcgcggctcctacggcctcaaggaggccgcc 422
             |||||||| ||||||   |||||| ||||||||||||| ||||| |||||||||||||| 
Sbjct: 76389 cgcctcgtgctcccggggctcgaccgcgagcgcggctcgtacgggctcaaggaggccgcg 76330

                 
Query: 423   ctcg 426
             ||||
Sbjct: 76329 ctcg 76326

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                            
Query: 363      cgcctcgtcctcccgtccctcgactgcgagcgcggctcctacggcctcaaggaggccgcc 422
                |||||||| ||||||   |||||| ||||||||||||| ||||| |||||||||||||| 
Sbjct: 30672658 cgcctcgtgctcccggggctcgaccgcgagcgcggctcgtacgggctcaaggaggccgcg 30672599

                    
Query: 423      ctcg 426
                ||||
Sbjct: 30672598 ctcg 30672595

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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 425     cgtcgaagcgctcggcatcgccc 447
               |||||||||||||||||||||||
Sbjct: 1250861 cgtcgaagcgctcggcatcgccc 1250883

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>emb|AL136531.16| Human DNA sequence from clone RP11-314N13 on chromosome 20 Contains the
             SNPH gene for syntaphilin, the 3' end of the RAD21L1 gene
             for RAD21-like 1 (S. pombe), the SDCBP2 gene for syndecan
             binding protein (syntenin) 2, a novel gene, the 5' end of
             a novel gene, the 3' end of the FKBP1A gene for FK506
             binding protein 1A (12kDa) and three CpG islands, complete
             sequence
          Length = 119072

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 158   ctcctcctcctgtccccacccc 179
             ||||||||||||||||||||||
Sbjct: 38728 ctcctcctcctgtccccacccc 38749

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>gb|AC108451.9| Homo sapiens chromosome 15, clone RP11-379K22, complete sequence
          Length = 198707

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 30   ctctcttctccttccctcctca 51
            ||||||||||||||||||||||
Sbjct: 9555 ctctcttctccttccctcctca 9576

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>gb|AC016705.4|AC016705 Homo sapiens BAC clone RP11-210M15 from 15, complete sequence
          Length = 177964

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 30     ctctcttctccttccctcctca 51
              ||||||||||||||||||||||
Sbjct: 133680 ctctcttctccttccctcctca 133701

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>gb|AC114667.12| Mus musculus chromosome 1, clone RP24-175L10, complete sequence
          Length = 171306

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 30    ctctcttctccttccctcctc 50
             |||||||||||||||||||||
Sbjct: 23107 ctctcttctccttccctcctc 23087

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>ref|XM_597877.2| PREDICTED: Bos taurus similar to ADAM metallopeptidase domain 8
            precursor (LOC519652), mRNA
          Length = 2937

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 283  cgccaccacgcagccgccgctctcccgcg 311
            ||||| |||||||||||||| ||||||||
Sbjct: 1080 cgccatcacgcagccgccgccctcccgcg 1052

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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 425     cgtcgaagcgctcggcatcgc 445
               |||||||||||||||||||||
Sbjct: 2644143 cgtcgaagcgctcggcatcgc 2644123

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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 231     catcgctgccgacgcagtgcc 251
               |||||||||||||||||||||
Sbjct: 3560077 catcgctgccgacgcagtgcc 3560097

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>gb|AC107905.5| Homo sapiens chromosome 15, clone CTD-2026J24, complete sequence
          Length = 175627

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 20    ttcctcctggctctcttctccttcc 44
             ||||||||| |||||||||||||||
Sbjct: 96033 ttcctcctgactctcttctccttcc 96009

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>gb|AC154295.2| Mus musculus BAC clone RP23-431G3 from chromosome 9, complete sequence
          Length = 197751

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 154    tgccctcctcctcctgtcccc 174
              |||||||||||||||||||||
Sbjct: 163245 tgccctcctcctcctgtcccc 163225

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>gb|AE004755.1| Pseudomonas aeruginosa PAO1, section 316 of 529 of the complete genome
          Length = 14759

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 424   tcgtcgaagcgctcggcatcg 444
             |||||||||||||||||||||
Sbjct: 12714 tcgtcgaagcgctcggcatcg 12694

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>dbj|AP003025.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-217L21, complete
             sequence
          Length = 193828

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 149   ccccgtgccctcctcctcctgtccccacc 177
             ||||||||||||||||| ||| |||||||
Sbjct: 12354 ccccgtgccctcctcctactgcccccacc 12382

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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 425     cgtcgaagcgctcggcatcgcccag 449
               |||||||||||||| ||||||||||
Sbjct: 2137555 cgtcgaagcgctcgacatcgcccag 2137579

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>ref|XM_584695.2| PREDICTED: Bos taurus similar to DNA-damage inducible protein 2
           (LOC539082), mRNA
          Length = 1191

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 396 ggctcctacggcctcaagga 415
           ||||||||||||||||||||
Sbjct: 184 ggctcctacggcctcaagga 203

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>ref|XM_415940.1| PREDICTED: Gallus gallus similar to hypothetical protein
           (LOC417696), mRNA
          Length = 1911

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 159 tcctcctcctgtccccaccc 178
           ||||||||||||||||||||
Sbjct: 921 tcctcctcctgtccccaccc 902

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>gb|AC087841.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-415I19, complete
              sequence
          Length = 198053

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 158    ctcctcctcctgtccccacc 177
              ||||||||||||||||||||
Sbjct: 105245 ctcctcctcctgtccccacc 105264

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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 432     gcgctcggcatcgcccagac 451
               ||||||||||||||||||||
Sbjct: 5941615 gcgctcggcatcgcccagac 5941634

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>emb|CR792443.13| Zebrafish DNA sequence from clone DKEY-52K1 in linkage group 13, complete
              sequence
          Length = 217981

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 145    cctcccccgtgccctcctcctcct 168
              |||||||| |||||||||||||||
Sbjct: 136149 cctcccccatgccctcctcctcct 136172

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>gb|AC121581.3| Mus musculus BAC clone RP23-256O22 from chromosome 3, complete sequence
          Length = 159314

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 157    cctcctcctcctgtccccacccca 180
              |||| |||||||||||||||||||
Sbjct: 108213 cctcgtcctcctgtccccacccca 108190

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>gb|AC132588.4| Mus musculus BAC clone RP24-258L16 from chromosome 10, complete sequence
          Length = 136807

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 154    tgccctcctcctcctgtccc 173
              ||||||||||||||||||||
Sbjct: 117538 tgccctcctcctcctgtccc 117519

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>ref|XM_811140.1| Trypanosoma cruzi strain CL Brener trans-sialidase
          (Tc00.1047053511185.80) partial mRNA
          Length = 2556

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 30 ctctcttctccttccctcctcatg 53
          |||||| |||||||||||||||||
Sbjct: 95 ctctctcctccttccctcctcatg 72

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>emb|AL590708.18| Human DNA sequence from clone RP11-395P17 on chromosome 9 Contains the
              PCSCL gene for likely ortholog of rat peroxisomal
              Ca-dependent solute carrier-like protein (KIAA1896), the
              PTGES2 gene for prostaglandin E synthase 2 (GBF1, GBF-1,
              C9orf15, FLJ14038), the LCN2 gene for lipocalin 2 (oncogene
              24p3) (NGAL), the C9orf16 gene for chromosome 9 open
              reading frame 16 (MGC4639, EST00098, FLJ12823), the CIZ1
              gene for Cip1-interacting zinc finger protein (LSFR1), the
              DNM1 gene for dynamin 1 (DNM), the GOLGA2 gene for golgi
              autoantigen, golgin subfamily a, 2 (GM130, MGC20672), the
              gene for a novel protein and seven CpG islands, complete
              sequence
          Length = 194056

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 158    ctcctcctcctgtccccacc 177
              ||||||||||||||||||||
Sbjct: 127304 ctcctcctcctgtccccacc 127323

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>emb|AL359815.26| Human DNA sequence from clone RP11-63N8 on chromosome 1 Contains the 3'
             end of the ALPL gene for alkaline phosphatase,
             liver/bone/kidney, the RAP1GA1 gene for RAP1, GTPase
             activating protein 1, a novel gene, the 3' end of the
             USP31 gene for ubiquitin specific protease 31 and a CpG
             island, complete sequence
          Length = 149651

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 156   ccctcctcctcctgtcccca 175
             ||||||||||||||||||||
Sbjct: 85747 ccctcctcctcctgtcccca 85728

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>emb|AL360076.9| Human DNA sequence from clone RP13-469L5 on chromosome X Contains the
             3' end of the STARD8 gene for START domain containing 8
             and a CpG island, complete sequence
          Length = 62516

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    ttcctcctggctctcttctc 39
             ||||||||||||||||||||
Sbjct: 31535 ttcctcctggctctcttctc 31554

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>gb|AF161269.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0034K24, complete sequence
          Length = 142852

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 283   cgccaccacgcagccgccgc 302
             ||||||||||||||||||||
Sbjct: 80560 cgccaccacgcagccgccgc 80541

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>emb|AL355863.18| Human DNA sequence from clone RP11-479A21 on chromosome 10 Contains an
             HSPC023 protein (HSPC023) pseudogene, complete sequence
          Length = 151552

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 156   ccctcctcctcctgtcccca 175
             ||||||||||||||||||||
Sbjct: 61983 ccctcctcctcctgtcccca 61964

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>emb|AL354916.16| Human DNA sequence from clone RP11-26K22 on chromosome 10 Contains a
             CpG island, complete sequence
          Length = 140148

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 20    ttcctcctggctctcttctc 39
             ||||||||||||||||||||
Sbjct: 78327 ttcctcctggctctcttctc 78308

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>emb|AL136167.8| Human DNA sequence from clone RP1-299I16 on chromosome Xq26.1-27.3
             Contains part of the GPR112 gene for G protein-coupled
             receptor 112, complete sequence
          Length = 63946

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    ctctcttctccttccctcct 49
             ||||||||||||||||||||
Sbjct: 55855 ctctcttctccttccctcct 55874

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>gb|AC026512.6| Homo sapiens chromosome 15, clone RP11-375D9, complete sequence
          Length = 90707

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    tctcttctccttccctcctc 50
             ||||||||||||||||||||
Sbjct: 28649 tctcttctccttccctcctc 28668

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>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 282     gcgccaccacgcagccgccg 301
               ||||||||||||||||||||
Sbjct: 1455055 gcgccaccacgcagccgccg 1455074

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>gb|DQ428694.1| Sorghum propinquum locus pSB0030 genomic sequence
          Length = 452

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 155 gccctcctcctcctgtcccc 174
           ||||||||||||||||||||
Sbjct: 158 gccctcctcctcctgtcccc 177

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>gb|AC020980.6| Homo sapiens chromosome 5 clone RPCI-1_167G20, complete sequence
          Length = 175177

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 27     tggctctcttctccttccct 46
              ||||||||||||||||||||
Sbjct: 142553 tggctctcttctccttccct 142572

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>gb|AC182764.2| Gallus gallus BAC clone CH261-140B3 from chromosome 1, complete
             sequence
          Length = 192460

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 159   tcctcctcctgtccccaccc 178
             ||||||||||||||||||||
Sbjct: 38375 tcctcctcctgtccccaccc 38356

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>ref|XM_687059.1| PREDICTED: Danio rerio similar to zinc finger protein 318
           (LOC563699), mRNA
          Length = 2332

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 383 cgactgcgagcgcggctcct 402
           ||||||||||||||||||||
Sbjct: 612 cgactgcgagcgcggctcct 593

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>ref|XM_686745.1| PREDICTED: Danio rerio similar to zinc finger protein 318
           (LOC563381), mRNA
          Length = 2293

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 383 cgactgcgagcgcggctcct 402
           ||||||||||||||||||||
Sbjct: 612 cgactgcgagcgcggctcct 593

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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 425     cgtcgaagcgctcggcatcg 444
               ||||||||||||||||||||
Sbjct: 1921496 cgtcgaagcgctcggcatcg 1921515



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 395     cggctcctacggcctcaagg 414
               ||||||||||||||||||||
Sbjct: 1302711 cggctcctacggcctcaagg 1302730

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>gb|AC022113.6| Homo sapiens chromosome 5 clone CTC-461F20, complete sequence
          Length = 188570

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 27     tggctctcttctccttccct 46
              ||||||||||||||||||||
Sbjct: 182671 tggctctcttctccttccct 182652

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>gb|AC158242.4| Pan troglodytes BAC clone CH251-354C10 from chromosome unknown, complete
              sequence
          Length = 182200

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 27     tggctctcttctccttccct 46
              ||||||||||||||||||||
Sbjct: 137993 tggctctcttctccttccct 137974

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>emb|AL929441.37| Mouse DNA sequence from clone RP23-418E20 on chromosome 4, complete
             sequence
          Length = 202920

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 160   cctcctcctgtccccacccc 179
             ||||||||||||||||||||
Sbjct: 91930 cctcctcctgtccccacccc 91911

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>gb|BC111200.1| Bos taurus cDNA clone MGC:134410 IMAGE:8056282, complete cds
          Length = 2086

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 396 ggctcctacggcctcaagga 415
           ||||||||||||||||||||
Sbjct: 358 ggctcctacggcctcaagga 377

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>gb|AC160409.6| Mus musculus 10 BAC RP23-184O11 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 209766

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 154    tgccctcctcctcctgtccc 173
              ||||||||||||||||||||
Sbjct: 206617 tgccctcctcctcctgtccc 206636

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>emb|AL954383.13| Zebrafish DNA sequence from clone CH211-226M11 in linkage group 17,
             complete sequence
          Length = 206679

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 383   cgactgcgagcgcggctcct 402
             ||||||||||||||||||||
Sbjct: 66905 cgactgcgagcgcggctcct 66924

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 283      cgccaccacgcagccgccgc 302
                ||||||||||||||||||||
Sbjct: 23306415 cgccaccacgcagccgccgc 23306434

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>gb|AC008625.5|AC008625 Homo sapiens chromosome 5 clone CTB-157D17, complete sequence
          Length = 137592

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 158   ctcctcctcctgtccccacc 177
             ||||||||||||||||||||
Sbjct: 45033 ctcctcctcctgtccccacc 45052

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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 428     cgaagcgctcggcatcgccc 447
               ||||||||||||||||||||
Sbjct: 2200602 cgaagcgctcggcatcgccc 2200621

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>gb|AC092636.3| Homo sapiens BAC clone RP11-353K11 from 2, complete sequence
          Length = 199721

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 291    cgcagccgccgctctcccgcgccg 314
              ||||||| ||||||||||||||||
Sbjct: 122383 cgcagcccccgctctcccgcgccg 122360

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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 395     cggctcctacggcctcaagg 414
               ||||||||||||||||||||
Sbjct: 1680990 cggctcctacggcctcaagg 1680971

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>gb|M91456.1|PIGRYR1 Sus scrofa strain Yorkshire ryanodine receptor (RYR1) gene, partial
            cds
          Length = 1568

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 25   cctggctctcttctccttccctcctcat 52
            ||||||||||||||||  ||||||||||
Sbjct: 1513 cctggctctcttctccagccctcctcat 1540

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>gb|AC116769.11| Mus musculus chromosome 15, clone RP23-415L16, complete sequence
          Length = 201535

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    tctcttctccttccctcctc 50
             ||||||||||||||||||||
Sbjct: 21754 tctcttctccttccctcctc 21773

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>gb|AF119222.1|AF119222 Oryza sativa BAC clone 1.H19, complete sequence
          Length = 77605

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 283   cgccaccacgcagccgccgc 302
             ||||||||||||||||||||
Sbjct: 73472 cgccaccacgcagccgccgc 73453

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>gb|AF128457.1|AF128457 Oryza sativa subsp. indica BAC clone 16F19 php20725 region, complete
             sequence
          Length = 70311

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 283   cgccaccacgcagccgccgc 302
             ||||||||||||||||||||
Sbjct: 66167 cgccaccacgcagccgccgc 66148

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 283      cgccaccacgcagccgccgc 302
                ||||||||||||||||||||
Sbjct: 23616325 cgccaccacgcagccgccgc 23616344

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>emb|AL935174.11| Zebrafish DNA sequence from clone CH211-195B21 in linkage group 17,
              complete sequence
          Length = 195606

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 383    cgactgcgagcgcggctcct 402
              ||||||||||||||||||||
Sbjct: 126529 cgactgcgagcgcggctcct 126510

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>emb|AL806523.14| Mouse DNA sequence from clone RP23-423O7 on chromosome 4, complete
              sequence
          Length = 217762

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 27     tggctctcttctccttccct 46
              ||||||||||||||||||||
Sbjct: 120266 tggctctcttctccttccct 120285

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>emb|AL732470.7| Mouse DNA sequence from clone RP23-38D3 on chromosome X, complete
             sequence
          Length = 220069

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 29    gctctcttctccttccctcctcat 52
             ||||||||||||||| ||||||||
Sbjct: 95667 gctctcttctccttctctcctcat 95644

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>emb|X65502.1|SSRYR19 S.scrofa ryr1 gene for ryanodine receptor, exon (pRYR56-15.9 (3'))
          Length = 520

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 25  cctggctctcttctccttccctcctcat 52
           ||||||||||||||||  ||||||||||
Sbjct: 143 cctggctctcttctccagccctcctcat 170

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>emb|Z49778.1|SSCRCRYR1 S.scrofa gene for skeletal muscle ryanodine receptor
          Length = 28080

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 25    cctggctctcttctccttccctcctcat 52
             ||||||||||||||||  ||||||||||
Sbjct: 19143 cctggctctcttctccagccctcctcat 19170

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>emb|X68247.1|SSCRCP S.scrofa CRC (RYR1) gene for calcium release channel (partial)
          Length = 2510

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 25   cctggctctcttctccttccctcctcat 52
            ||||||||||||||||  ||||||||||
Sbjct: 2193 cctggctctcttctccagccctcctcat 2220

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>dbj|AP002815.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-939C17
          Length = 174484

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 156   ccctcctcctcctgtcccca 175
             ||||||||||||||||||||
Sbjct: 16439 ccctcctcctcctgtcccca 16420


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,959,546
Number of Sequences: 3902068
Number of extensions: 3959546
Number of successful extensions: 101745
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101048
Number of HSP's gapped (non-prelim): 697
length of query: 469
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 447
effective length of database: 17,147,199,772
effective search space: 7664798298084
effective search space used: 7664798298084
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result