>GIGAN_ARATH (Q9SQI2) GIGANTEA protein|
          Length = 1173

 Score = 25.4 bits (54), Expect(2) = 0.77
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -2

Query: 252 NSATCTGWIWPESPALSVCFDVEILARREEEVHGAG 145
           +S TC  W    + A + CFD  + +    E++  G
Sbjct: 813 DSVTCLNWKQENTCASTTCFDTAVTSASRTEMNPRG 848



 Score = 25.0 bits (53), Expect(2) = 0.77
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 164 RRSMGPGCQWRGGRRGRIHRAKGSGREQEEGVK 66
           R  M P    RG  +   H  +GSGR  E+G+K
Sbjct: 841 RTEMNP----RGNHKYARHSDEGSGRPSEKGIK 869

>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)|
           (RNA-binding protein BRUNOL-2) (Deadenylation factor
           CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein
           F41)
          Length = 486

 Score = 31.6 bits (70), Expect = 0.93
 Identities = 20/65 (30%), Positives = 33/65 (50%)
 Frame = +2

Query: 137 TGTPAPWTSSSLLARISTSKQTDRAGDSGQIQPVHVAEFPQVVRNAQANLLQKNFAGKSM 316
           +GT A  TSSS L+ +++S  +  +  S  + P+      Q +  A A L   + AG + 
Sbjct: 279 SGTNALTTSSSPLSVLTSSGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAA 338

Query: 317 LVGGI 331
           L GG+
Sbjct: 339 LNGGL 343

>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)|
           (RNA-binding protein BRUNOL-2) (Deadenylation factor
           CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding
           protein) (EDEN-BP)
          Length = 486

 Score = 31.6 bits (70), Expect = 0.93
 Identities = 20/65 (30%), Positives = 33/65 (50%)
 Frame = +2

Query: 137 TGTPAPWTSSSLLARISTSKQTDRAGDSGQIQPVHVAEFPQVVRNAQANLLQKNFAGKSM 316
           +GT A  TSSS L+ +++S  +  +  S  + P+      Q +  A A L   + AG + 
Sbjct: 279 SGTNALTTSSSPLSVLTSSGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAA 338

Query: 317 LVGGI 331
           L GG+
Sbjct: 339 LNGGL 343

>TDRD3_HUMAN (Q9H7E2) Tudor domain-containing protein 3|
          Length = 651

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
 Frame = -3

Query: 278 LVHSSQLG---ETLLRALVGSGQNRQPCLSALMSKSWQGGRRRSMGPGCQWRGGRRGRI 111
           L H +++G   E   +AL+ +G N +  L+ L++ + Q   +  MGP  + RG  RGRI
Sbjct: 199 LKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQ---KPVMGPPLRGRGKGRGRI 254

>GYRB_ACIBA (Q43907) DNA gyrase subunit B (EC 5.99.1.3) (Fragment)|
          Length = 388

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -2

Query: 225 WPESPALS-VCFDVEILARREEEVH--GAGVPVAGRSERAN 112
           WP +   S   F+VEILARR  E+    AGV +  R ER N
Sbjct: 65  WPSAETFSQTIFNVEILARRLRELSFLNAGVRIVLRDERIN 105

>HRPB_ECOLI (P37024) ATP-dependent RNA helicase hrpB (EC 3.6.1.-)|
          Length = 809

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
 Frame = +2

Query: 125 DRPATGTPAPWTSSSLLARISTSKQTDRAGDSGQIQP---VHVAEFPQVVRNA---QANL 286
           +R A   P    +  +  R+S +  T RAG +G+++P   +H+    Q  R A   +  +
Sbjct: 293 ERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEI 352

Query: 287 LQKNFAG--KSMLVGGIDKETSLAWM 358
           LQ + +G    +L  G      ++W+
Sbjct: 353 LQSDLSGLLMELLQWGCSDPAQMSWL 378

>GYRB_ACIG3 (Q44270) DNA gyrase subunit B (EC 5.99.1.3) (Fragment)|
          Length = 388

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -2

Query: 252 NSATCTGWIWPESPALS-VCFDVEILARREEEVH--GAGVPVAGRSERAN 112
           +S+  T   WP     S   F+VEILARR  E+    AGV +  R ER N
Sbjct: 56  DSSGTTVRFWPSELTFSQTIFNVEILARRLRELSFLNAGVRIVLRDERIN 105

>Y43R_IRV6 (P18305) Hypothetical protein 443R|
          Length = 2432

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 22/69 (31%), Positives = 30/69 (43%)
 Frame = +2

Query: 242  VAEFPQVVRNAQANLLQKNFAGKSMLVGGIDKETSLAWMICGNELFVWSYLAAVAKDCLA 421
            VA  P V   A       N +G S L+G     TS A +  G+ L +     +V    L 
Sbjct: 2155 VATAPTVAAGAITLAKMANLSGTSQLIGSSSTTTSPANISLGSTLQMSGTTLSVNTSTLM 2214

Query: 422  LEIPSSLVG 448
            L +PSS+ G
Sbjct: 2215 LLVPSSVNG 2223

>SPR2G_MOUSE (O70558) Small proline-rich protein 2G|
          Length = 76

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +1

Query: 73  PSSCSRPLPFARWIRPLRPPRHWHPGPMDLLLPPCQ 180
           P  C  P P  +   P  PP+   P P   L  PCQ
Sbjct: 20  PPKCPEPCPLPKCPEPCPPPKCPEPCPEPCLPSPCQ 55

>TRUB_THEFY (Q47RU8) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA|
           pseudouridine 55 synthase) (Psi55 synthase)
           (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
          Length = 293

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 146 PAPWTSSSLLARISTSKQTDRAGDSGQIQPV 238
           PA WTS  ++AR+     T R G +G + P+
Sbjct: 11  PAGWTSHDVVARVRRLAGTRRVGHAGTLDPM 41

>TDXH2_PICTO (Q6L140) Probable peroxiredoxin 2 (EC 1.11.1.15)|
          Length = 201

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 103 ARWIRPLRPPRHWHPGPMDLLLPPCQDFD-IKADRQGWRFW 222
           A W R +  P +W PG   +L PP    D ++  R+G + W
Sbjct: 156 ANWSRKIATPVNWRPGDKGILPPPSTLEDALQRIREGNKTW 196

>AMO_ECOLI (P46883) Copper amine oxidase precursor (EC 1.4.3.6) (Tyramine|
           oxidase) (2-phenylethylamine oxidase)
          Length = 757

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 151 PMDLLLPPCQDFDIKADRQGWRFWPDPTSARSRVSPSCEECT 276
           PM ++ P  +++ I  D   WR W    S  SRV P     T
Sbjct: 335 PMQIIEPEGKNYTITGDMIHWRNWDFHLSMNSRVGPMISTVT 376

>VGLM_HANTL (P16853) Envelope polyprotein precursor (M polyprotein) [Contains:|
           Glycoprotein G1; Glycoprotein G2]
          Length = 1135

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = -1

Query: 448 SHKRRRDLKCKTIFCNSSQVAPDKKLISTYHPC---KGCFFVNAAYK 317
           S++ R+ + C  + CNS+   P   +I   H C   K C      Y+
Sbjct: 119 SYRSRKSITCYDLSCNSTYCKPTLYMIVPIHACNMMKSCLIALGPYR 165

>VGLM_HANTH (P16493) Envelope polyprotein precursor (M polyprotein) [Contains:|
           Glycoprotein G1; Glycoprotein G2]
          Length = 1134

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = -1

Query: 448 SHKRRRDLKCKTIFCNSSQVAPDKKLISTYHPC---KGCFFVNAAYK 317
           S++ R+ + C  + CNS+   P   +I   H C   K C      Y+
Sbjct: 119 SYRSRKSITCYDLSCNSTYCKPTLYMIVPIHACNMMKSCLIALGPYR 165

>MYCS_RAT (P23999) Protein S-myc|
          Length = 429

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 91  PLPFARWIRPLRPPRHWHP-GPMDLLLPP 174
           PLP+A   RPL+ PR   P GP+  +L P
Sbjct: 301 PLPYAEDARPLKKPRSQDPLGPLKCVLRP 329

>ROBO1_HUMAN (Q9Y6N7) Roundabout homolog 1 precursor (H-Robo-1) (Deleted in U|
            twenty twenty)
          Length = 1651

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = +2

Query: 137  TGTPAPWTSSSLLARISTSKQTDRAGDSGQIQPVHVAEFPQVVRNAQANLLQKNFAGK 310
            +G P P+ ++ L+    ++   + +GDSG+     + +  Q V   Q N++++N   K
Sbjct: 1067 SGQPTPYATTQLIQSNLSNNMNNGSGDSGEKHWKPLGQQKQEVAPVQYNIVEQNKLNK 1124

>EPL1_YEAST (P43572) Enhancer of polycomb-like protein 1|
          Length = 832

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 14/22 (63%), Positives = 14/22 (63%)
 Frame = -2

Query: 375 SSFPHIIHARDVSLSMPPTSIL 310
           SSF H IH R   LSM P SIL
Sbjct: 194 SSFEHAIHERQPFLSMDPESIL 215

>VGLM_HANTV (P08668) Envelope polyprotein precursor (M polyprotein) [Contains:|
           Glycoprotein G1; Glycoprotein G2]
          Length = 1135

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = -1

Query: 448 SHKRRRDLKCKTIFCNSSQVAPDKKLISTYHPC---KGCFFVNAAYK 317
           S++ R+ + C  + CNS+   P   +I   H C   K C      Y+
Sbjct: 119 SYRSRKSVTCYDLSCNSTYCKPTLYMIVPIHACNMMKSCLIALGPYR 165

>GYRB_ACICA (Q43947) DNA gyrase subunit B (EC 5.99.1.3) (Fragment)|
          Length = 388

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -2

Query: 225 WP-ESPALSVCFDVEILARREEEVH--GAGVPVAGRSERAN 112
           WP E       F+VEILARR  E+    AGV +  R ER N
Sbjct: 65  WPSELTFTQTIFNVEILARRLRELSFLNAGVRIVLRDERIN 105

>YOR3_LORDV (P54636) Hypothetical 28.5 kDa protein in coat protein gene|
           3'region (ORF3)
          Length = 268

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 275 VHSSQLGETLLRALVGSGQNRQPCLSALMSKSWQGGRRRSMGP 147
           +HS+Q   T L +  GSG       SA  ++SW   + R++ P
Sbjct: 168 LHSNQTVSTRLGSSAGSGTGVSSLSSAARTRSWVEDQNRNLSP 210


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,871,909
Number of Sequences: 219361
Number of extensions: 1380172
Number of successful extensions: 4736
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 4561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4731
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)