ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl43c02 |
|---|---|
| Clone Library Name | barley_pub |
>OPLA_MOUSE (Q8K010) 5-oxoprolinase (EC 3.5.2.9) (5-oxo-L-prolinase)| (Pyroglutamase) (5-OPase) Length = 1288 Score = 143 bits (361), Expect = 1e-34 Identities = 70/96 (72%), Positives = 79/96 (82%) Frame = +2 Query: 5 VLFMQSDGGLAPESRFSGHKAVLSGPAGGVVGYSQTLFELETSKPLIGFDMGGTSTDVSR 184 VLFM+SDGGLAP FSG +AVLSGPAGGVVGYS T ++LE +P+IGFDMGGTSTDVSR Sbjct: 265 VLFMRSDGGLAPMDAFSGSRAVLSGPAGGVVGYSTTTYQLEGGQPVIGFDMGGTSTDVSR 324 Query: 185 YDGSYEQVLETQIAGAIIQAPQLDINTVAAGGGSKL 292 Y G +E V E AG +QAPQLDINTVAAGGGS+L Sbjct: 325 YAGEFEHVFEASTAGVTLQAPQLDINTVAAGGGSRL 360
>OPLA_RAT (P97608) 5-oxoprolinase (EC 3.5.2.9) (5-oxo-L-prolinase)| (Pyroglutamase) (5-OPase) Length = 1288 Score = 142 bits (359), Expect = 2e-34 Identities = 70/96 (72%), Positives = 78/96 (81%) Frame = +2 Query: 5 VLFMQSDGGLAPESRFSGHKAVLSGPAGGVVGYSQTLFELETSKPLIGFDMGGTSTDVSR 184 VLFM+SDGGLAP FSG +AVLSGPAGGVVGYS T + LE +P+IGFDMGGTSTDVSR Sbjct: 265 VLFMRSDGGLAPMDAFSGSRAVLSGPAGGVVGYSATTYHLEGGQPVIGFDMGGTSTDVSR 324 Query: 185 YDGSYEQVLETQIAGAIIQAPQLDINTVAAGGGSKL 292 Y G +E V E AG +QAPQLDINTVAAGGGS+L Sbjct: 325 YAGEFEHVFEASTAGVTLQAPQLDINTVAAGGGSRL 360
>OPLA_BOVIN (Q75WB5) 5-oxoprolinase (EC 3.5.2.9) (5-oxo-L-prolinase)| (Pyroglutamase) (5-OPase) Length = 1288 Score = 141 bits (356), Expect = 4e-34 Identities = 69/96 (71%), Positives = 78/96 (81%) Frame = +2 Query: 5 VLFMQSDGGLAPESRFSGHKAVLSGPAGGVVGYSQTLFELETSKPLIGFDMGGTSTDVSR 184 VLFM+SDGGLAP FSG +AVLSGPAGGVVGYS T + +E +P+IGFDMGGTSTDVSR Sbjct: 265 VLFMRSDGGLAPMDSFSGSRAVLSGPAGGVVGYSATTYRVEGGQPVIGFDMGGTSTDVSR 324 Query: 185 YDGSYEQVLETQIAGAIIQAPQLDINTVAAGGGSKL 292 Y G +E V E AG +QAPQLDINTVAAGGGS+L Sbjct: 325 YAGEFEHVFEASTAGVTLQAPQLDINTVAAGGGSRL 360
>OPLA_HUMAN (O14841) 5-oxoprolinase (EC 3.5.2.9) (5-oxo-L-prolinase)| (Pyroglutamase) (5-OPase) Length = 1288 Score = 140 bits (353), Expect = 8e-34 Identities = 69/96 (71%), Positives = 77/96 (80%) Frame = +2 Query: 5 VLFMQSDGGLAPESRFSGHKAVLSGPAGGVVGYSQTLFELETSKPLIGFDMGGTSTDVSR 184 VLFM+SDGGLAP FSG AVLSGPAGGVVGYS T ++ E +P+IGFDMGGTSTDVSR Sbjct: 265 VLFMRSDGGLAPMDTFSGSSAVLSGPAGGVVGYSATTYQQEGGQPVIGFDMGGTSTDVSR 324 Query: 185 YDGSYEQVLETQIAGAIIQAPQLDINTVAAGGGSKL 292 Y G +E V E AG +QAPQLDINTVAAGGGS+L Sbjct: 325 YAGEFEHVFEASTAGVTLQAPQLDINTVAAGGGSRL 360
>YAOF_SCHPO (Q10094) Hypothetical protein C11D3.15 in chromosome I| Length = 1317 Score = 133 bits (334), Expect = 1e-31 Identities = 65/94 (69%), Positives = 76/94 (80%) Frame = +2 Query: 11 FMQSDGGLAPESRFSGHKAVLSGPAGGVVGYSQTLFELETSKPLIGFDMGGTSTDVSRYD 190 FMQSDGGL ++FSG A+LSGPAGGVVG++ T ++ + P+IGFDMGGTSTDVSRY Sbjct: 281 FMQSDGGLVDVNKFSGLHAILSGPAGGVVGFALTSYDEDVKIPVIGFDMGGTSTDVSRYG 340 Query: 191 GSYEQVLETQIAGAIIQAPQLDINTVAAGGGSKL 292 GSYE V ET AG IQ+PQLDINTVAAGGGS+L Sbjct: 341 GSYEHVFETTTAGVTIQSPQLDINTVAAGGGSRL 374
>YKV5_YEAST (P28273) Hypothetical 140.4 kDa protein in URA1-DOA1 intergenic| region Length = 1286 Score = 127 bits (319), Expect = 7e-30 Identities = 65/98 (66%), Positives = 76/98 (77%), Gaps = 1/98 (1%) Frame = +2 Query: 2 NVLFMQSDGGLAPESRFSGHKAVLSGPAGGVVGYSQTLFELETSKPLIGFDMGGTSTDVS 181 ++ FMQSDGGL +FSG K++LSGPAGGV+GYS T ++ + PLIGFDMGGTSTDVS Sbjct: 274 HIQFMQSDGGLVDGGKFSGLKSILSGPAGGVIGYSSTCYDKNNNIPLIGFDMGGTSTDVS 333 Query: 182 RY-DGSYEQVLETQIAGAIIQAPQLDINTVAAGGGSKL 292 RY DG E V ET AG IIQ+PQLDI+TVAAGG S L Sbjct: 334 RYGDGRLEHVFETVTAGIIIQSPQLDIHTVAAGGSSIL 371
>YAOE_SCHPO (Q10093) Hypothetical protein C11D3.14c in chromosome I| Length = 1260 Score = 112 bits (279), Expect = 3e-25 Identities = 55/97 (56%), Positives = 68/97 (70%), Gaps = 1/97 (1%) Frame = +2 Query: 5 VLFMQSDGGLAPESRFSGHKAVLSGPAGGVVGYSQTL-FELETSKPLIGFDMGGTSTDVS 181 + FM+SDGGL F+ A++SGPA G VG+++T + P IGFDMGGTSTDVS Sbjct: 263 IQFMKSDGGLVDIDNFTAISAIMSGPAAGTVGFAKTSSLHADDKTPAIGFDMGGTSTDVS 322 Query: 182 RYDGSYEQVLETQIAGAIIQAPQLDINTVAAGGGSKL 292 RYDG +E + E I G IQ+PQLDI TVAAGGGS+L Sbjct: 323 RYDGKFEHIYEANIFGLYIQSPQLDIQTVAAGGGSRL 359
>HYUA_PSESN (Q01262) Hydantoin utilization protein A (ORF2)| Length = 690 Score = 58.5 bits (140), Expect = 4e-09 Identities = 39/96 (40%), Positives = 54/96 (56%), Gaps = 5/96 (5%) Frame = +2 Query: 14 MQSDGGLAPESRFSGH--KAVLSGPAGGVVGYSQTLFELETSKPLIGFDMGGTSTDVSRY 187 M S+GG+A S +LSGPA G++G + EL + LI FD+GGTS D+ Sbjct: 243 MCSNGGVATPKTVSEKPVNTLLSGPAAGILGGAWA-GELTNRQKLITFDVGGTSADIGII 301 Query: 188 -DGSYEQ--VLETQIAGAIIQAPQLDINTVAAGGGS 286 D Y + +T IAG + P +DI+T+ AGGGS Sbjct: 302 TDSGYGESSARDTWIAGYPVMVPMIDIHTIGAGGGS 337
>Y964_METJA (Q58374) Hypothetical protein MJ0964| Length = 680 Score = 39.3 bits (90), Expect = 0.003 Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 15/106 (14%) Frame = +2 Query: 14 MQSDGGLAPESRFSGHKAVL--SGPAGGVVGYSQTLFELETSKPLIGFDMGGTSTDVSRY 187 MQS GG++ + A SGPA G + + L +K +IGFDMGGT+ S Sbjct: 241 MQSSGGISNIKYATERPAAFIESGPAAGAIAVAYFSKILNDNK-VIGFDMGGTTAKASTI 299 Query: 188 DGSYEQVL-ETQIAGAI------------IQAPQLDINTVAAGGGS 286 + V E ++ G + ++ P +D+ V+AGGG+ Sbjct: 300 INNSPLVTNEYEVGGEVHAGRLIKGSGYPVRFPFIDLAEVSAGGGT 345
>BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-associated| transcript 2) Length = 2160 Score = 34.7 bits (78), Expect = 0.064 Identities = 21/63 (33%), Positives = 28/63 (44%) Frame = -2 Query: 219 WVSRTCS*LPS*RLTSVDVPPMSNPMSGFDVSSSNKVCE*PTTPPAGPDNTALCPENLLS 40 W S+ P S PP S P+ +SN+ P PPA P+NT L P + S Sbjct: 86 WASKQEQSDPKSSDASTAQPPESQPLPASQTPASNQ----PKRPPAAPENTPLVPSGVKS 141 Query: 39 GAR 31 A+ Sbjct: 142 WAQ 144
>BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-associated| transcript 2) Length = 2157 Score = 34.7 bits (78), Expect = 0.064 Identities = 21/63 (33%), Positives = 28/63 (44%) Frame = -2 Query: 219 WVSRTCS*LPS*RLTSVDVPPMSNPMSGFDVSSSNKVCE*PTTPPAGPDNTALCPENLLS 40 W S+ P S PP S P+ +SN+ P PPA P+NT L P + S Sbjct: 86 WASKQEQSDPKSSDASTAQPPESQPLPASQTPASNQ----PKRPPAAPENTPLVPSGVKS 141 Query: 39 GAR 31 A+ Sbjct: 142 WAQ 144
>RBL_PYRAB (Q9UZD7) Ribulose bisphosphate carboxylase (EC 4.1.1.39) (RuBisCO)| Length = 424 Score = 32.0 bits (71), Expect = 0.41 Identities = 20/62 (32%), Positives = 29/62 (46%) Frame = +2 Query: 23 DGGLAPESRFSGHKAVLSGPAGGVVGYSQTLFELETSKPLIGFDMGGTSTDVSRYDGSYE 202 D GLA + + H A P G+ T+F L + +IG D T T V + G YE Sbjct: 269 DLGLAIHAHRAMHAAFTRNPKHGI-----TMFALAKAARMIGVDQIHTGTAVGKMAGDYE 323 Query: 203 QV 208 ++ Sbjct: 324 EI 325
>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated| transcript 2) Length = 2161 Score = 30.8 bits (68), Expect = 0.92 Identities = 19/63 (30%), Positives = 26/63 (41%) Frame = -2 Query: 219 WVSRTCS*LPS*RLTSVDVPPMSNPMSGFDVSSSNKVCE*PTTPPAGPDNTALCPENLLS 40 W S+ P S PP S P+ +SN+ P PP P+NT P + S Sbjct: 86 WASKQEQSDPKSSDASTAQPPESQPLPASQTPASNQ----PKRPPTAPENTPSVPSGVKS 141 Query: 39 GAR 31 A+ Sbjct: 142 WAQ 144
>BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-associated| transcript 2) Length = 2158 Score = 30.8 bits (68), Expect = 0.92 Identities = 19/63 (30%), Positives = 26/63 (41%) Frame = -2 Query: 219 WVSRTCS*LPS*RLTSVDVPPMSNPMSGFDVSSSNKVCE*PTTPPAGPDNTALCPENLLS 40 W S+ P S PP S P+ +SN+ P PP P+NT P + S Sbjct: 86 WASKQEQSDPKSSDASTAQPPESQPLPASQTPASNQ----PKRPPTAPENTPSVPSGVKS 141 Query: 39 GAR 31 A+ Sbjct: 142 WAQ 144
>CSF3R_HUMAN (Q99062) Granulocyte colony-stimulating factor receptor precursor| (G-CSF-R) (CD114 antigen) Length = 836 Score = 30.0 bits (66), Expect = 1.6 Identities = 14/46 (30%), Positives = 25/46 (54%) Frame = +3 Query: 21 QMVVLPRRADSLGTKQYYQALQVVLLATHRPCLNLRHQSHSLGLTW 158 +++V P D++G Q+ A + +H P L+L+H +G TW Sbjct: 501 EIIVTPLYQDTMGPSQHVYAYSQEMAPSHAPELHLKH----IGKTW 542
>RBL_PYRHO (O58677) Ribulose bisphosphate carboxylase (EC 4.1.1.39) (RuBisCO)| Length = 430 Score = 30.0 bits (66), Expect = 1.6 Identities = 19/62 (30%), Positives = 29/62 (46%) Frame = +2 Query: 23 DGGLAPESRFSGHKAVLSGPAGGVVGYSQTLFELETSKPLIGFDMGGTSTDVSRYDGSYE 202 D GLA + + H A P G+ T+ L + +IG D T T V + G+YE Sbjct: 270 DLGLAIHAHRAMHAAFTRNPRHGI-----TMLALAKAARMIGVDQIHTGTAVGKMAGNYE 324 Query: 203 QV 208 ++ Sbjct: 325 EI 326
>PARA_CHLTR (O84586) ParA family protein CT_582| Length = 255 Score = 29.3 bits (64), Expect = 2.7 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 3/78 (3%) Frame = +3 Query: 3 MCCLCSQMVVLPRRADSLGTKQYYQALQVVLLATHRPCLNLRHQSHSLGLT---WEVHPP 173 +C L ++ + A T ++Y + LAT ++ RH + LG+T W Sbjct: 131 LCWLTESALIAAQHALICATPEFYSVKGLERLATFIQGISSRHPLNILGVTLSFWNYRGK 190 Query: 174 T*AAMMEAMNKFLRPKLL 227 AA E + K KLL Sbjct: 191 NNAAFTELIQKTFPGKLL 208
>PARA_CHLMU (Q9PJF8) ParA family protein TC0871| Length = 255 Score = 29.3 bits (64), Expect = 2.7 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 3/78 (3%) Frame = +3 Query: 3 MCCLCSQMVVLPRRADSLGTKQYYQALQVVLLATHRPCLNLRHQSHSLGLT---WEVHPP 173 +C L ++ + A T ++Y + LAT ++ RH + LG+T W Sbjct: 131 LCWLTESALIAAQHALICATPEFYSVKGLERLATFIQGISSRHPLNILGVTLSFWNYRGK 190 Query: 174 T*AAMMEAMNKFLRPKLL 227 AA E + K KLL Sbjct: 191 NNAAFTELIQKTFPGKLL 208
>EFG_SYNP6 (P18667) Elongation factor G (EF-G)| Length = 694 Score = 29.3 bits (64), Expect = 2.7 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 6/72 (8%) Frame = +2 Query: 83 AGGVVGYSQTLFELETSKPLIGFD-----MGGTSTDVSRYDGSYEQ-VLETQIAGAIIQA 244 +GG Y + ELE ++P GF+ +GGT Y G EQ + ET +G + Sbjct: 500 SGGKGQYGHVVIELEPAEPGTGFEFVSKIVGGTVP--KEYVGPAEQGMKETCESGVLAGY 557 Query: 245 PQLDINTVAAGG 280 P +DI G Sbjct: 558 PLIDIKATLVDG 569
>RBL_PYRFU (Q8U1P9) Ribulose bisphosphate carboxylase (EC 4.1.1.39) (RuBisCO)| Length = 420 Score = 29.3 bits (64), Expect = 2.7 Identities = 19/62 (30%), Positives = 28/62 (45%) Frame = +2 Query: 23 DGGLAPESRFSGHKAVLSGPAGGVVGYSQTLFELETSKPLIGFDMGGTSTDVSRYDGSYE 202 D GLA + + H A P G+ T++ + +IG D T T V + G YE Sbjct: 265 DLGLAIHAHRAMHAAFTRNPKHGI-----TMYAIAKLARMIGVDQIHTGTAVGKMAGDYE 319 Query: 203 QV 208 +V Sbjct: 320 EV 321
>SSDH_PONPY (Q6A2H2) Succinate semialdehyde dehydrogenase, mitochondrial| precursor (EC 1.2.1.24) (NAD(+)-dependent succinic semialdehyde dehydrogenase) Length = 535 Score = 28.5 bits (62), Expect = 4.6 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = +2 Query: 26 GGLAPESRFSGHKAVLSGPAGGVVGYSQTLFELET 130 GGL P SR + A L G AGG+ G S L ++ Sbjct: 29 GGLVPASRPAPGPAQLRGYAGGLAGLSAALLRTDS 63
>ZFP7_ARATH (Q39266) Zinc finger protein 7| Length = 209 Score = 28.1 bits (61), Expect = 6.0 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%) Frame = +2 Query: 185 YDGSYEQVLETQIAGAIIQAPQ---LDINTVAAGGG 283 + GS+ QV+E A ++ A LD+N+VAA GG Sbjct: 160 WPGSFRQVVEEAEAPVVVVASTESGLDLNSVAANGG 195
>POLG_BVDVN (P19711) Genome polyprotein [Contains: N-terminal protease (EC| 3.4.22.-) (N-pro) (Autoprotease p20); Capsid protein C; E(rns) glycoprotein (gp44/48); Envelope glycoprotein E1 (gp33); Envelope glycoprotein E2 (gp55); p7; Nonstructural protein 2 Length = 3988 Score = 27.7 bits (60), Expect = 7.8 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%) Frame = +1 Query: 28 WSC-PGEQILWAQSSIIRPCRWC 93 W+C PG+Q+L+ SI C+WC Sbjct: 879 WTCVPGDQLLYKGGSI-ESCKWC 900
>HMW2_MYCPN (P75471) Cytadherence high molecular weight protein 2 (Cytadherence| accessory protein 2) Length = 1818 Score = 27.7 bits (60), Expect = 7.8 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = +2 Query: 113 LFELETSKPLIGFDMGGTSTDVSRYDGSYEQVLET 217 L+ELE K L+G + T D+ D + V ET Sbjct: 209 LYELENQKRLVGIEYEATYQDLVSADAELQNVYET 243 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,082,360 Number of Sequences: 219361 Number of extensions: 958774 Number of successful extensions: 2795 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 2712 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2788 length of database: 80,573,946 effective HSP length: 73 effective length of database: 64,560,593 effective search space used: 1549454232 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
