Clone Information

BLAST Search Result

Clone Name	bastl43b09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1...	35	0.039
2	SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1	35	0.052
3	SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1	35	0.052
4	SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1...	35	0.052
5	GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor (H...	27	0.40
6	ROBO1_RAT (O55005) Roundabout homolog 1 precursor	31	0.74
7	ROBO1_MOUSE (O89026) Roundabout homolog 1 precursor	31	0.74
8	LATS1_HUMAN (O95835) Serine/threonine-protein kinase LATS1 (EC 2...	31	0.97
9	LATS1_MOUSE (Q8BYR2) Serine/threonine-protein kinase LATS1 (EC 2...	31	0.97
10	LAMBV_CHICK (Q01636) Laminin beta-1 chain variant (Laminin beta-...	31	0.97
11	EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline...	25	1.1
12	EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)	28	1.1
13	Y4BJ_RHISN (P55377) Hypothetical 67.9 kDa protein y4bJ	30	1.3
14	XYLS_SULSO (Q9P999) Alpha-xylosidase (EC 3.2.1.-)	30	1.3
15	TCRG1_HUMAN (O14776) Transcription elongation regulator 1 (TATA ...	30	1.3
16	MUCDL_MOUSE (Q8VHF2) Mucin and cadherin-like protein precursor (...	30	1.7
17	SC24D_HUMAN (O94855) Protein transport protein Sec24D (SEC24-rel...	30	2.2
18	LECT_SOLTU (Q9S8M0) Chitin-binding lectin 1 precursor (PL-I)	25	2.4
19	SMRC2_HUMAN (Q8TAQ2) SWI/SNF-related matrix-associated actin-dep...	29	2.8
20	CUD1_SCHGR (Q7M4F4) Endocuticle structural glycoprotein SgAbd-1	29	2.8
21	WASL_RAT (O08816) Neural Wiskott-Aldrich syndrome protein (N-WASP)	29	3.7
22	WASL_MOUSE (Q91YD9) Neural Wiskott-Aldrich syndrome protein (N-W...	29	3.7
23	SSGP_VOLCA (P21997) Sulfated surface glycoprotein 185 precursor ...	29	3.7
24	SECD_MYCTU (Q50634) Protein-export membrane protein secD	29	3.7
25	WASL_BOVIN (Q95107) Neural Wiskott-Aldrich syndrome protein (N-W...	29	3.7
26	SMRC2_MOUSE (Q6PDG5) SWI/SNF-related matrix-associated actin-dep...	29	3.7
27	PRP28_CRYNE (Q5KNF8) Pre-mRNA splicing ATP-dependent RNA helicas...	29	3.7
28	Y091_NPVAC (P41479) Hypothetical 24.1 kDa protein in LEF4-P33 in...	25	4.1
29	K2C3_HUMAN (P12035) Keratin, type II cytoskeletal 3 (Cytokeratin...	28	4.8
30	PEXLP_TOBAC (Q03211) Pistil-specific extensin-like protein precu...	28	4.8
31	CWC22_CRYNE (Q5KFX4) Pre-mRNA-splicing factor CWC22	28	4.8
32	CTGE5_MOUSE (Q8R311) Cutaneous T-cell lymphoma-associated antige...	28	4.8
33	ACRO_HUMAN (P10323) Acrosin precursor (EC 3.4.21.10) [Contains: ...	28	4.8
34	CWC27_EMENI (Q5AUG9) Peptidyl-prolyl isomerase cwc27 (EC 5.2.1.8)	23	6.2
35	WBP11_RAT (Q5PQQ2) WW domain-binding protein 11 (Wbp-11)	28	6.3
36	WBP11_MOUSE (Q923D5) WW domain-binding protein 11 (WBP-11)	28	6.3
37	WBP11_HUMAN (Q9Y2W2) WW domain-binding protein 11 (WBP-11) (SH3 ...	28	6.3
38	IF2_CHRVO (Q7NY13) Translation initiation factor IF-2	28	6.3
39	CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22	28	6.3
40	ZDHC8_MOUSE (Q5Y5T5) Probable palmitoyltransferase ZDHHC8 (EC 2....	28	6.3
41	RAPH1_HUMAN (Q70E73) Ras-associated and pleckstrin homology doma...	28	6.3
42	ENV2_MOUSE (P11370) Retrovirus-related Env polyprotein from Fv-4...	28	6.3
43	ROBO1_HUMAN (Q9Y6N7) Roundabout homolog 1 precursor (H-Robo-1) (...	28	6.3
44	TBX9_CAEEL (Q22289) T-box transcription factor tbx-9	28	8.2
45	NETR_PONPY (Q5G269) Neurotrypsin precursor (EC 3.4.21.-)	28	8.2
46	MSA2_PLAFG (P19260) Merozoite surface antigen 2 precursor (MSA-2...	28	8.2
47	TKR_DROME (P14083) Protein TKR (dTKR)	28	8.2
48	SWR1_GIBZE (Q4IAK7) Helicase SWR1 (EC 3.6.1.-)	28	8.2
49	P85B_HUMAN (O00459) Phosphatidylinositol 3-kinase regulatory bet...	28	8.2
50	HXA3_MOUSE (P02831) Homeobox protein Hox-A3 (Hox-1.5) (MO-10)	28	8.2
51	NO75_LUPLU (Q06841) Early nodulin 75 protein (N-75) (NGM-75) (Fr...	28	8.2
52	NETR_PANTR (Q5G271) Neurotrypsin precursor (EC 3.4.21.-)	28	8.2
53	NETR_MACMU (Q5G267) Neurotrypsin precursor (EC 3.4.21.-)	28	8.2
54	NETR_HYLLE (Q5G268) Neurotrypsin precursor (EC 3.4.21.-)	28	8.2
55	NETR_GORGO (Q5G270) Neurotrypsin precursor (EC 3.4.21.-)	28	8.2
56	MBB1A_RAT (O35821) Myb-binding protein 1A (PAR-interacting prote...	28	8.2
57	FA98A_MOUSE (Q3TJZ6) Protein FAM98A	28	8.2
58	WASL_HUMAN (O00401) Neural Wiskott-Aldrich syndrome protein (N-W...	28	8.2
59	TEN3_TENMO (Q27270) Tenecin-3 precursor	28	8.2

>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 35.4 bits (80), Expect = 0.039
 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 7/34 (20%)
 Frame = +2

Query: 14  PPRRDRSPVLPPR-------PHSRAPDPRTLTPP 94
           PPRR RSP  PPR       P  R+P PR  +PP
Sbjct: 585 PPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPP 618



 Score = 27.7 bits (60), Expect = 8.2
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +2

Query: 5   LARPPRRDRSPVLPPRPHSRAPDPRTLTPPHAIPLAR 115
           + +  RR RSP  PP    R+P P    PP   P  R
Sbjct: 552 VTKSSRRRRSPSPPPARRRRSPSPAPPPPPPPPPPRR 588

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>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 35.0 bits (79), Expect = 0.052
 Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
 Frame = +2

Query: 14  PPRRDRSPVLP------PRPHSRAPDPRTLTPP 94
           PPRR RSP LP      P P  R+P PR  +PP
Sbjct: 560 PPRRRRSPSLPRRRSPSPPPRRRSPSPRRYSPP 592

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>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 35.0 bits (79), Expect = 0.052
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 7/36 (19%)
 Frame = +2

Query: 8   ARPPRRDRSPVLPPR-------PHSRAPDPRTLTPP 94
           A PPRR R+P  PPR       P  R+P PR  +PP
Sbjct: 578 APPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPP 613

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>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 35.0 bits (79), Expect = 0.052
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 7/36 (19%)
 Frame = +2

Query: 8   ARPPRRDRSPVLPPR-------PHSRAPDPRTLTPP 94
           A PPRR R+P  PPR       P  R+P PR  +PP
Sbjct: 564 APPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPP 599

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>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor|
           (Hydroxyproline-rich glycoprotein 1)
          Length = 555

 Score = 26.6 bits (57), Expect(2) = 0.40
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 11  RPPRRDRSPVLPPRPHSRAPDPRTLTPP 94
           RPP    +P +PP P S  P P   TPP
Sbjct: 277 RPPFPANTP-MPPSPPSPPPSPAPPTPP 303



 Score = 24.3 bits (51), Expect(2) = 0.40
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 76  PNPDPPACHPTSPPARSP 129
           P+P PP+  P+ PP+ +P
Sbjct: 323 PSPAPPSPAPSPPPSPAP 340



 Score = 23.9 bits (50), Expect(2) = 4.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 32  SPVLPPRPHSRAPDPRTLTPP 94
           SP +PP P   +P P + +PP
Sbjct: 164 SPPVPPSPAPPSPTPPSPSPP 184



 Score = 23.1 bits (48), Expect(2) = 4.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 76  PNPDPPACHPTSPPARSP 129
           P+P PP+  P  PP+ +P
Sbjct: 200 PSPAPPSPAPPVPPSPAP 217

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>ROBO1_RAT (O55005) Roundabout homolog 1 precursor|
          Length = 1651

 Score = 31.2 bits (69), Expect = 0.74
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 5    LARPPRRDRSPVLPPRPHSRAPDPRTLTPPH 97
            +  PP R R PV PP      P PR ++PPH
Sbjct: 1285 MPHPPDRRRQPVSPP------PPPRPISPPH 1309

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>ROBO1_MOUSE (O89026) Roundabout homolog 1 precursor|
          Length = 1612

 Score = 31.2 bits (69), Expect = 0.74
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 5    LARPPRRDRSPVLPPRPHSRAPDPRTLTPPH 97
            +  PP R R PV PP      P PR ++PPH
Sbjct: 1246 MPHPPDRRRQPVSPP------PPPRPISPPH 1270

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>LATS1_HUMAN (O95835) Serine/threonine-protein kinase LATS1 (EC 2.7.11.1) (Large|
           tumor suppressor homolog 1) (WARTS protein kinase)
           (h-warts)
          Length = 1130

 Score = 30.8 bits (68), Expect = 0.97
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 14  PPRRDRSPVLPPRPHSRAPDPRTLTPP 94
           PP + RS   PP P  + P PR  TPP
Sbjct: 238 PPPQVRSVTPPPPPRGQTPPPRGTTPP 264

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>LATS1_MOUSE (Q8BYR2) Serine/threonine-protein kinase LATS1 (EC 2.7.11.1) (Large|
           tumor suppressor homolog 1) (WARTS protein kinase)
          Length = 1129

 Score = 30.8 bits (68), Expect = 0.97
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 14  PPRRDRSPVLPPRPHSRAPDPRTLTPP 94
           PP + RS   PP P  + P PR  TPP
Sbjct: 238 PPPQVRSVTPPPPPRGQTPPPRGTTPP 264

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>LAMBV_CHICK (Q01636) Laminin beta-1 chain variant (Laminin beta-1-2 chain)|
           (Fragment)
          Length = 198

 Score = 30.8 bits (68), Expect = 0.97
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +2

Query: 8   ARPPRRDRSPVLPPRPHSRAPDPRTLTPPHAIPLARP 118
           A PP   R     P P  R PDP +  PPHA P + P
Sbjct: 17  ATPPTHAR-----PDPTRRHPDPESRAPPHARPRSPP 48

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>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich|
           glycoprotein)
          Length = 620

 Score = 25.4 bits (54), Expect(2) = 1.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 14  PPRRDRSPVLPPRPHSRAPDPRTLTPP 94
           PP  ++SP  PP      P P T +PP
Sbjct: 386 PPTYEQSPPPPPAYSPPLPAPPTYSPP 412



 Score = 23.9 bits (50), Expect(2) = 1.1
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 79  NPDPPACHPTSPPARSP 129
           +P PPA  P  PP  SP
Sbjct: 434 SPPPPAYSPPPPPTYSP 450

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>EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)|
          Length = 283

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 14  PPRRDRSPVLPPRPHSRAPDPRTLTPPHAIPLARP 118
           P  + +SPV PP P  +A  P T TP    P  +P
Sbjct: 96  PSPKPKSPVYPPPP--KASTPPTYTPSPKPPATKP 128



 Score = 26.2 bits (56), Expect(2) = 1.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 76  PNPDPPACHPTSPPARSP 129
           P P PPA  P +PP  +P
Sbjct: 132 PTPKPPATKPPTPPVYTP 149



 Score = 23.1 bits (48), Expect(2) = 1.1
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +2

Query: 14  PPRRDRSPVLPPRPHSRAPDPRTLTP 91
           PP    SP   P P +  P P T TP
Sbjct: 71  PPTYTPSPKPTPPPATPKPTPPTYTP 96

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>Y4BJ_RHISN (P55377) Hypothetical 67.9 kDa protein y4bJ|
          Length = 630

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -1

Query: 89  GSGFGDLELASVDGAGARENDLDGEG 12
           G+G+  +E A++DG G R  D+DG+G
Sbjct: 226 GNGWTSIEGATLDGGGYRLQDIDGDG 251

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>XYLS_SULSO (Q9P999) Alpha-xylosidase (EC 3.2.1.-)|
          Length = 731

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = -1

Query: 152 EQETRRHAGERAGGLVGWHAGGSGFGDLELASVDGAG 42
           EQE     GER  GL G HAGG+G G      +D +G
Sbjct: 103 EQEFELSEGERVYGL-GQHAGGNGLGQSSAYKLDYSG 138

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>TCRG1_HUMAN (O14776) Transcription elongation regulator 1 (TATA box-binding|
           protein-associated factor 2S) (Transcription factor
           CA150)
          Length = 1098

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +2

Query: 14  PPRRDRSPVLPPRPHSRAPDPRTLTPPHAIPLARP 118
           PP   R P +PP   S  P P  + PP   P+  P
Sbjct: 91  PPHLQRPPFMPPPMSSMPPPPGMMFPPGMPPVTAP 125

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>MUCDL_MOUSE (Q8VHF2) Mucin and cadherin-like protein precursor|
           (Mu-protocadherin)
          Length = 831

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 17  PRRDRSPVLPPRPHSRAPDPRTLTPPHAIPLA 112
           P+  + P+ PP P S +P P + TPP   P A
Sbjct: 710 PKLAQPPLRPPSPMSSSPTPPSSTPPSPQPKA 741

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>SC24D_HUMAN (O94855) Protein transport protein Sec24D (SEC24-related protein D)|
          Length = 1032

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +2

Query: 5   LARPPRRDRSPVLPPRPHSRAPDPRTLTPPHAIPLARPL 121
           L  PPR  +  +L P      P P TL  P A PL  P+
Sbjct: 152 LQTPPRPPQPSILQPGSQVLPPPPTTLNGPGASPLPLPM 190

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>LECT_SOLTU (Q9S8M0) Chitin-binding lectin 1 precursor (PL-I)|
          Length = 323

 Score = 24.6 bits (52), Expect(2) = 2.4
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 73  SPNPDPPACHPTSPPARSP 129
           SP+P PP   P  PP   P
Sbjct: 191 SPSPPPPPASPPPPPPALP 209



 Score = 23.5 bits (49), Expect(2) = 2.4
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 14  PPRRDRSPVLPPRPHSRAPDPRTLTPP 94
           PP     P  PP P   +P P + +PP
Sbjct: 169 PPPPSPPPPPPPSPPPPSPPPPSPSPP 195

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>SMRC2_HUMAN (Q8TAQ2) SWI/SNF-related matrix-associated actin-dependent regulator|
            of chromatin subfamily C member 2 (SWI/SNF complex 170
            kDa subunit) (BRG1-associated factor 170)
          Length = 1214

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 38   VLPPRPHSRAPDPRTLTPPHAIPLARP 118
            V PP PH  +P P   TPP  +P A P
Sbjct: 1040 VPPPGPHGPSPFPNQQTPPSMMPGAVP 1066

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>CUD1_SCHGR (Q7M4F4) Endocuticle structural glycoprotein SgAbd-1|
          Length = 184

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
 Frame = +2

Query: 11  RPPRRDRSPVLPPRPHSRA----PDPRTLTPPHAIPLARP 118
           R PR   +PV P  P SRA    P PR + P   +P   P
Sbjct: 17  RIPRPSATPVRPSPPASRAPPPPPPPRPVVPSQPLPAPAP 56

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>WASL_RAT (O08816) Neural Wiskott-Aldrich syndrome protein (N-WASP)|
          Length = 501

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 7/42 (16%)
 Frame = +2

Query: 14  PPRRDRSPVLPPRPHSRAPDPRTL-------TPPHAIPLARP 118
           PP R   P  PP PHS  P P           PP   P A P
Sbjct: 278 PPSRGGPPPPPPPPHSSGPPPPPARGRGAPPPPPSRAPTAAP 319

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>WASL_MOUSE (Q91YD9) Neural Wiskott-Aldrich syndrome protein (N-WASP)|
          Length = 501

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 7/42 (16%)
 Frame = +2

Query: 14  PPRRDRSPVLPPRPHSRAPDPRTL-------TPPHAIPLARP 118
           PP R   P  PP PHS  P P           PP   P A P
Sbjct: 278 PPSRGGPPPPPPPPHSSGPPPPPARGRGAPPPPPSRAPTAAP 319

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>SSGP_VOLCA (P21997) Sulfated surface glycoprotein 185 precursor (SSG 185)|
          Length = 485

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = +1

Query: 61  ASSRSPNPDPPACHPTSPPARSP 129
           ASSR P+P PP+  P SPP  SP
Sbjct: 237 ASSRPPSP-PPSPRPPSPPPPSP 258

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>SECD_MYCTU (Q50634) Protein-export membrane protein secD|
          Length = 573

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 73  SPNPDPPACHPTSPPARSP 129
           SPNP  PA  P +PPA +P
Sbjct: 178 SPNPTSPASPPPAPPAEAP 196

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>WASL_BOVIN (Q95107) Neural Wiskott-Aldrich syndrome protein (N-WASP)|
          Length = 505

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 7/42 (16%)
 Frame = +2

Query: 14  PPRRDRSPVLPPRPHSRAPDPRTL-------TPPHAIPLARP 118
           PP R   P  PP PHS  P P           PP   P A P
Sbjct: 281 PPSRGGPPPPPPPPHSSGPPPPPARGRGAPPPPPSRAPTAAP 322

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>SMRC2_MOUSE (Q6PDG5) SWI/SNF-related matrix-associated actin-dependent regulator|
            of chromatin subfamily C member 2 (SWI/SNF complex 170
            kDa subunit) (BRG1-associated factor 170)
          Length = 1213

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 38   VLPPRPHSRAPDPRTLTPPHAIPLARP 118
            V PP PH  +P P   TPP  +P A P
Sbjct: 1040 VPPPGPHGPSPFPNQPTPPSMMPGAVP 1066

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>PRP28_CRYNE (Q5KNF8) Pre-mRNA splicing ATP-dependent RNA helicase PRP28 (EC|
           3.6.1.-)
          Length = 738

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 19/45 (42%), Positives = 24/45 (53%)
 Frame = -1

Query: 164 DEGEEQETRRHAGERAGGLVGWHAGGSGFGDLELASVDGAGAREN 30
           D   E+E RRH  ER     G++AG SG  D +    DG G R+N
Sbjct: 62  DRAAEEERRRHEQER----YGYNAGPSGRNDRDGYGRDGYG-RDN 101

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>Y091_NPVAC (P41479) Hypothetical 24.1 kDa protein in LEF4-P33 intergenic|
           region
          Length = 224

 Score = 25.0 bits (53), Expect(2) = 4.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 67  SRSPNPDPPACHPTSPPARSP 129
           S  P+P PP   P+ PP+ SP
Sbjct: 118 SPPPSPIPPTPTPSPPPSPSP 138



 Score = 22.3 bits (46), Expect(2) = 4.1
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +2

Query: 14  PPRRDRSPVLPPRPHSRAPDPRTLTPP 94
           PP    SP  P  P +  P   T TPP
Sbjct: 55  PPTPTPSPPSPTPPPTPIPPTPTPTPP 81

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>K2C3_HUMAN (P12035) Keratin, type II cytoskeletal 3 (Cytokeratin-3) (CK-3)|
           (Keratin-3) (K3) (65 kDa cytokeratin)
          Length = 629

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 134 HAGERAGGLVGWHAGGSGFGDLELASVDGAGARENDLDGEGVRA 3
           H+G   GG  G+ +G  GFG   L ++ G  +    +   G RA
Sbjct: 34  HSGGAGGGAYGFRSGAGGFGSRSLYNLGGNKSISISVAAGGSRA 77

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>PEXLP_TOBAC (Q03211) Pistil-specific extensin-like protein precursor (PELP)|
          Length = 426

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 14  PPRRDRSPVLPPRPHSRAPDPRTLTPPHAIPLARP 118
           PPR  +SP+LPP P    P   T +P    P A P
Sbjct: 223 PPRAKKSPLLPPPPPVAYPPVMTPSPS---PAAEP 254

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>CWC22_CRYNE (Q5KFX4) Pre-mRNA-splicing factor CWC22|
          Length = 831

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 15/24 (62%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +2

Query: 23 RDRSPVL-PPRPHSRAPDPRTLTP 91
          R RSP L PPRP SR+   R+LTP
Sbjct: 12 RPRSPSLSPPRPDSRSSRGRSLTP 35



 Score = 27.7 bits (60), Expect = 8.2
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
 Frame = +2

Query: 14  PPRR------DRSPVLPPRPHSRAPDPRTLTPP 94
           PPRR       RSP  PPR    + +PR+ +PP
Sbjct: 717 PPRRRRYSSDSRSPSPPPRRRQYSDEPRSPSPP 749

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>CTGE5_MOUSE (Q8R311) Cutaneous T-cell lymphoma-associated antigen 5 homolog|
           (cTAGE-5 protein) (Meningioma-expressed antigen 6)
          Length = 779

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 16/35 (45%), Positives = 17/35 (48%)
 Frame = +2

Query: 14  PPRRDRSPVLPPRPHSRAPDPRTLTPPHAIPLARP 118
           PPR    P  PP P SR+  P  L PP   P A P
Sbjct: 740 PPRAGFFPP-PPHPESRSELPPDLIPPSKEPAADP 773

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>ACRO_HUMAN (P10323) Acrosin precursor (EC 3.4.21.10) [Contains: Acrosin light|
           chain; Acrosin heavy chain]
          Length = 421

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +2

Query: 11  RPPRRDRSPVLPPRPHSRAPDPRTLTPPHAIPLARPL 121
           +PP R     LPPRP +  P P    PP   P A PL
Sbjct: 329 QPPPRP----LPPRPPAAQPPPPPSPPPPPPPPASPL 361

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>CWC27_EMENI (Q5AUG9) Peptidyl-prolyl isomerase cwc27 (EC 5.2.1.8)|
          Length = 558

 Score = 23.5 bits (49), Expect(2) = 6.2
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +2

Query: 17  PRRDRSPVLPPRPHSRAPDPRTLTP 91
           P+R   P  PP+   + P+P    P
Sbjct: 279 PKRQPQPSAPPKNRPKTPEPTKQLP 303



 Score = 23.1 bits (48), Expect(2) = 6.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 76  PNPDPPACHPTSPPARS 126
           PNP+ P   P+ PP +S
Sbjct: 305 PNPESPERSPSPPPKQS 321

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>WBP11_RAT (Q5PQQ2) WW domain-binding protein 11 (Wbp-11)|
          Length = 641

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 15/29 (51%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +2

Query: 35  PVLPPRPHSRAPDPRTLTP-PHAIPLARP 118
           P LPP P  R P PR   P P  IP  RP
Sbjct: 476 PGLPPGPPPRGPPPRLPPPAPPGIPPPRP 504

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>WBP11_MOUSE (Q923D5) WW domain-binding protein 11 (WBP-11)|
          Length = 641

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 15/29 (51%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +2

Query: 35  PVLPPRPHSRAPDPRTLTP-PHAIPLARP 118
           P LPP P  R P PR   P P  IP  RP
Sbjct: 476 PGLPPGPPPRGPPPRLPPPAPPGIPPPRP 504

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>WBP11_HUMAN (Q9Y2W2) WW domain-binding protein 11 (WBP-11) (SH3 domain-binding|
           protein SNP70) (Npw38-binding protein) (NpwBP)
          Length = 641

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 15/29 (51%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +2

Query: 35  PVLPPRPHSRAPDPRTLTP-PHAIPLARP 118
           P LPP P  R P PR   P P  IP  RP
Sbjct: 476 PGLPPGPPPRGPPPRLPPPAPPGIPPPRP 504

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>IF2_CHRVO (Q7NY13) Translation initiation factor IF-2|
          Length = 964

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 61  ASSRSPNPDPPACHPTSPPARSP 129
           A  R P P P A  P+ PPA +P
Sbjct: 296 AGDRGPRPAPAAAAPSQPPAPAP 318

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>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22|
          Length = 1010

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
 Frame = +2

Query: 14  PPRRDRSPVLPPRPHSRAPDP---RTLTP---PHAIPLAR 115
           PP RD SP   P   + +P P   R+L+P   PH+ P +R
Sbjct: 45  PPSRDPSPYRSPGERTPSPSPRRDRSLSPRDQPHSHPRSR 84

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>ZDHC8_MOUSE (Q5Y5T5) Probable palmitoyltransferase ZDHHC8 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 8) (DHHC-8)
          Length = 762

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +2

Query: 11  RPPRRDRSPVLPPRPHSRAP 70
           RPP R  SPVL PRP   +P
Sbjct: 516 RPPPRSFSPVLGPRPREPSP 535

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>RAPH1_HUMAN (Q70E73) Ras-associated and pleckstrin homology domains-containing|
            protein 1 (RAPH1) (Lamellipodin) (Proline-rich EVH1
            ligand 2) (PREL-2) (Protein RMO1) (Amyotrophic lateral
            sclerosis 2 chromosomal region candidate 9 gene protein)
          Length = 1302

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +2

Query: 14   PPRRDRSPVLPPRPHSRAPDPRTLTPPHAIP 106
            PP  + S V PP P S  P P    PP A P
Sbjct: 970  PPPPESSLVFPPPPPSPVPAPPPPPPPTASP 1000

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>ENV2_MOUSE (P11370) Retrovirus-related Env polyprotein from Fv-4 locus|
          Length = 679

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +2

Query: 11  RPPRRDRSPVLPPRPHSRAPDPRTLTPPHAIPL 109
           RPP R   P  PP P +  P    LTPP   PL
Sbjct: 278 RPPSRP-VPARPPPPSNSTPTGDPLTPPTGDPL 309

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>ROBO1_HUMAN (Q9Y6N7) Roundabout homolog 1 precursor (H-Robo-1) (Deleted in U|
            twenty twenty)
          Length = 1651

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 17   PRRDRSPVLPPRPHSRAPDPRTLTPPH 97
            P R R PV PP      P PR ++PPH
Sbjct: 1289 PDRRRQPVSPP------PPPRPISPPH 1309

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>TBX9_CAEEL (Q22289) T-box transcription factor tbx-9|
          Length = 292

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 20  RRDRSPVLPPRPHSRAPDPRTLTPPHAIPL 109
           R+ RSP      +S++P P++ +PP   PL
Sbjct: 199 RKRRSPSYSDGSNSQSPSPKSRSPPEVAPL 228

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>NETR_PONPY (Q5G269) Neurotrypsin precursor (EC 3.4.21.-)|
          Length = 877

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +2

Query: 44  PPRPHSRAPDPRTLTPPHAIPLARP 118
           PPR     P PR   PP A+P  RP
Sbjct: 55  PPRTRPPPPLPRFPRPPRALPAQRP 79

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>MSA2_PLAFG (P19260) Merozoite surface antigen 2 precursor (MSA-2) (Allelic|
           form 2) (Membrane protein PF7)
          Length = 287

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = -1

Query: 131 AGERAGGLVGWHAGGSGFGDLELASVDGAGARENDLDGEG 12
           AG  AGG  G  AGGS  G    ++   AG      DG G
Sbjct: 72  AGGSAGGSAGGSAGGSAGGSAGGSAGGSAGGSAGSGDGNG 111

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>TKR_DROME (P14083) Protein TKR (dTKR)|
          Length = 1046

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
 Frame = +2

Query: 32  SPVLPPRPHSRAPDP-----RTLTPPHAIPLARPL 121
           +P  PP P S  P P      TLTPPH   L  PL
Sbjct: 701 APDGPPHPPSPLPFPGMSSAMTLTPPHMFGLDSPL 735

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>SWR1_GIBZE (Q4IAK7) Helicase SWR1 (EC 3.6.1.-)|
          Length = 1691

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -1

Query: 164 DEGEEQETRRHAGERAGGLVGWHAGGSGFGDLELASVDGAGARENDLDGE 15
           +E EE+E+   + E AGGL+G       FG  EL  ++     E   D +
Sbjct: 597 EEDEEEESEEESDEDAGGLLGLL-----FGKSELKKMNSEAVAETPADSK 641

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>P85B_HUMAN (O00459) Phosphatidylinositol 3-kinase regulatory beta subunit|
           (PI3-kinase p85-beta subunit) (PtdIns-3-kinase p85-beta)
          Length = 728

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +2

Query: 5   LARPPRRDRSP-VLPPRPHSRAPDPRTLTP 91
           LARP  R R P  LP RP   AP+P    P
Sbjct: 83  LARPGPRPRGPRPLPARPRDGAPEPGLTLP 112

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>HXA3_MOUSE (P02831) Homeobox protein Hox-A3 (Hox-1.5) (MO-10)|
          Length = 443

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 8   ARPPRRDRSPVLPPRPHSRAPDPRTLTPPHAIPLARP 118
           ++PP     P+ PP P +  P P+   PP   P   P
Sbjct: 81  SQPPGLGEPPLPPPPPQAAPPAPQPPQPPPQPPAPTP 117

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>NO75_LUPLU (Q06841) Early nodulin 75 protein (N-75) (NGM-75) (Fragment)|
          Length = 434

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +2

Query: 14  PPRRDRSPVLPPRPHSRAP--DPRTLTPPHAIP 106
           PP  ++ P++ P PH + P  +P    PP A P
Sbjct: 6   PPPHEKPPIVHPPPHEKPPLFEPPFEKPPPAHP 38

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>NETR_PANTR (Q5G271) Neurotrypsin precursor (EC 3.4.21.-)|
          Length = 875

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +2

Query: 44  PPRPHSRAPDPRTLTPPHAIPLARP 118
           PPR     P PR   PP A+P  RP
Sbjct: 53  PPRTRPPPPLPRFPRPPRALPAQRP 77

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>NETR_MACMU (Q5G267) Neurotrypsin precursor (EC 3.4.21.-)|
          Length = 875

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +2

Query: 44  PPRPHSRAPDPRTLTPPHAIPLARP 118
           PPR     P PR   PP A+P  RP
Sbjct: 53  PPRTRPPPPLPRFPRPPRALPAQRP 77

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>NETR_HYLLE (Q5G268) Neurotrypsin precursor (EC 3.4.21.-)|
          Length = 875

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +2

Query: 44  PPRPHSRAPDPRTLTPPHAIPLARP 118
           PPR     P PR   PP A+P  RP
Sbjct: 53  PPRTRPPPPLPRFPRPPRALPAQRP 77

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>NETR_GORGO (Q5G270) Neurotrypsin precursor (EC 3.4.21.-)|
          Length = 876

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +2

Query: 44  PPRPHSRAPDPRTLTPPHAIPLARP 118
           PPR     P PR   PP A+P  RP
Sbjct: 54  PPRTRPPPPLPRFPRPPRALPAQRP 78

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>MBB1A_RAT (O35821) Myb-binding protein 1A (PAR-interacting protein) (PIP)|
          Length = 1344

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 67   SRSPNPDPPACHPTSPPARSP 129
            ++SP P+ P   P++PPA++P
Sbjct: 1244 AKSPAPNNPTLSPSTPPAKTP 1264

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>FA98A_MOUSE (Q3TJZ6) Protein FAM98A|
          Length = 515

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -1

Query: 158 GEEQETRRHAGERAGGLVGWHAGG---SGFGDLELASVDGAG 42
           G +    R +G + GG  G H+GG    G+G  + +S  G+G
Sbjct: 392 GYQDGAYRDSGFQPGGYHGGHSGGYQAGGYGGFQTSSYTGSG 433

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>WASL_HUMAN (O00401) Neural Wiskott-Aldrich syndrome protein (N-WASP)|
          Length = 505

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 7/42 (16%)
 Frame = +2

Query: 14  PPRRDRSPVLPPRPHSRAPDPRTL-------TPPHAIPLARP 118
           PP R   P  PP PH+  P P           PP   P A P
Sbjct: 281 PPSRGGPPPPPPPPHNSGPPPPPARGRGAPPPPPSRAPTAAP 322

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>TEN3_TENMO (Q27270) Tenecin-3 precursor|
          Length = 96

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -1

Query: 134 HAGERAGGLVGWHAGGSGFGDL--ELASVDGAGARENDLDGEGVRA 3
           H G + GG +G H GG   G L      + G G +++   G G  A
Sbjct: 40  HLGGQQGGHLGGHQGGQPGGHLGGHQGGIGGTGGQQHGQHGPGTGA 85


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.305    0.123    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,670,614
Number of Sequences: 219361
Number of extensions: 408819
Number of successful extensions: 3013
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 2088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2933
length of database: 80,573,946
effective HSP length: 56
effective length of database: 68,289,730
effective search space used: 1638953520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result