ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl43b07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472792.1| Oryza sativa (japonica cultivar-group), predic... 137 3e-29
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 137 3e-29
3emb|AL606653.3|OSJN00104 Oryza sativa genomic DNA, chromosome 4,... 137 3e-29
4gb|CP000316.1| Polaromonas sp. JS666, complete genome 48 0.022
5gb|AF259558.1|AF259558 Rattus norvegicus prostaglandin F2 alpha ... 46 0.086
6ref|NM_183628.1| Oryza sativa (japonica cultivar-group), predic... 44 0.34
7gb|AC146372.3| Pan troglodytes BAC clone RP43-59I19 from 7, comp... 44 0.34
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.34
9dbj|AP002482.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.34
10gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 42 1.3
11ref|XM_968893.1| PREDICTED: Tribolium castaneum similar to CG136... 42 1.3
12emb|BX842576.1| Mycobacterium tuberculosis H37Rv complete genome... 42 1.3
13emb|BX248338.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 42 1.3
14gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 42 1.3
15emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 42 1.3
16dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 42 1.3
17gb|DQ217304.1| Taeniopygia guttata clone 0065P0012A06 mRNA sequence 40 5.3
18gb|AC161212.9| Mus musculus chromosome 3, clone RP24-267M11, com... 40 5.3
19ref|XM_476678.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.3
20ref|XM_473777.1| Oryza sativa (japonica cultivar-group), predic... 40 5.3
21gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genom... 40 5.3
22gb|BC012964.1| Mus musculus ribosomal protein S6 kinase, polypep... 40 5.3
23ref|XM_877922.1| PREDICTED: Bos taurus hypothetical protein LOC6... 40 5.3
24gb|AY596305.1| Chlamydomonas reinhardtii cell wall protein GP2 (... 40 5.3
25gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.3
26emb|AL590822.36| Human DNA sequence from clone RP11-181G12 on ch... 40 5.3
27gb|AY167575.1| Oryza sativa (japonica cultivar-group) EDR1 (EDR1... 40 5.3
28emb|AL022318.2|HS150C2 Human DNA sequence from clone CTA-150C2 o... 40 5.3
29gb|DQ146365.1| Homo sapiens apolipoprotein B mRNA editing enzyme... 40 5.3
30emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 5.3
31gb|DQ113464.1| Neurospora crassa voucher R. Metzenberg 6204 phos... 40 5.3
32emb|AL606638.2|OSJN00077 Oryza sativa genomic DNA, chromosome 4,... 40 5.3
33gb|AC106799.3| Homo sapiens chromosome 5 clone RP11-445O3, compl... 40 5.3
34gb|AC104305.2| Homo sapiens chromosome 3 clone RP11-523D22, comp... 40 5.3
35dbj|AK154674.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 5.3
36gb|AY864330.1| Chrysodeixis chalcites nucleopolyhedrovirus, comp... 40 5.3
37gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 5.3
38dbj|AK004412.1| Mus musculus 18-day embryo whole body cDNA, RIKE... 40 5.3
39dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
40dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
41gb|AC105049.4| Homo sapiens chromosome 8, clone RP11-299M14, com... 40 5.3
42emb|BX813335.2| Mouse DNA sequence from clone RP24-375E5 on chro... 40 5.3
43dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
44dbj|AK120600.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.3
45dbj|AK069862.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.3
46gb|AC120557.12| Mus musculus chromosome 19, clone RP24-493E6, co... 40 5.3
47gb|AF074714.1|AF074714 Mus musculus mitogen- and stress-activate... 40 5.3
48gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 40 5.3
49emb|AL512308.19| Human DNA sequence from clone RP11-164H16 on ch... 40 5.3
50emb|BX000490.13| Mouse DNA sequence from clone RP24-96D14 on chr... 40 5.3
51ref|NM_019924.1| Mus musculus ribosomal protein S6 kinase, polyp... 40 5.3
52gb|U00090.1| Rhizobium sp. NGR234 plasmid pNGR234a, complete seq... 40 5.3
53gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome 40 5.3
54emb|AL928593.4| Mouse DNA sequence from clone RP23-100E9 on chro... 40 5.3 
>ref|XM_472792.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3411

 Score =  137 bits (69), Expect = 3e-29
 Identities = 210/257 (81%)
 Strand = Plus / Plus

                                                                       
Query: 137 ttcttcgattccgccgtcgccgctgccggcggagcctacgcctgcgagattgccgccacc 196
           |||||||| |||||||||||||  |||||||| || | |||||||||||| || ||  ||
Sbjct: 85  ttcttcgactccgccgtcgccgtcgccggcggcgcgttcgcctgcgagatcgcggcggcc 144

                                                                       
Query: 197 cgccgcggctggctaagccgaggcaatgggagcgtccagttcgattccaccgccaccgca 256
           | |||||| ||||| ||||| ||| | || | |||||||||||  ||| ||||  | || 
Sbjct: 145 caccgcgggtggctcagccggggccacggcaccgtccagttcggctccgccgcggcggcc 204

                                                                       
Query: 257 actctcgccggagaactcgcctcctccggtcgcctaccccgcttcctcggctccctcctc 316
            ||  |||||  |  |||||||||||||| ||||| ||||||||||||||| ||||||||
Sbjct: 205 gctgccgccgcgggcctcgcctcctccggccgcctcccccgcttcctcggcgccctcctc 264

                                                                       
Query: 317 tccgtctcccctgcccccgcggaccttctcccccgcgcgcccgacctttctctccgcgtg 376
           |||||||||||| ||||||  ||||| ||||| |||||| ||||||| || ||||||| |
Sbjct: 265 tccgtctccccttcccccgtcgacctcctcccgcgcgcgtccgacctctccctccgcgcg 324

                            
Query: 377 gccgacgcccgcctcgt 393
           |||| |||  |||||||
Sbjct: 325 gccggcgcgggcctcgt 341
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  137 bits (69), Expect = 3e-29
 Identities = 210/257 (81%)
 Strand = Plus / Plus

                                                                            
Query: 137      ttcttcgattccgccgtcgccgctgccggcggagcctacgcctgcgagattgccgccacc 196
                |||||||| |||||||||||||  |||||||| || | |||||||||||| || ||  ||
Sbjct: 23259543 ttcttcgactccgccgtcgccgtcgccggcggcgcgttcgcctgcgagatcgcggcggcc 23259602

                                                                            
Query: 197      cgccgcggctggctaagccgaggcaatgggagcgtccagttcgattccaccgccaccgca 256
                | |||||| ||||| ||||| ||| | || | |||||||||||  ||| ||||  | || 
Sbjct: 23259603 caccgcgggtggctcagccggggccacggcaccgtccagttcggctccgccgcggcggcc 23259662

                                                                            
Query: 257      actctcgccggagaactcgcctcctccggtcgcctaccccgcttcctcggctccctcctc 316
                 ||  |||||  |  |||||||||||||| ||||| ||||||||||||||| ||||||||
Sbjct: 23259663 gctgccgccgcgggcctcgcctcctccggccgcctcccccgcttcctcggcgccctcctc 23259722

                                                                            
Query: 317      tccgtctcccctgcccccgcggaccttctcccccgcgcgcccgacctttctctccgcgtg 376
                |||||||||||| ||||||  ||||| ||||| |||||| ||||||| || ||||||| |
Sbjct: 23259723 tccgtctccccttcccccgtcgacctcctcccgcgcgcgtccgacctctccctccgcgcg 23259782

                                 
Query: 377      gccgacgcccgcctcgt 393
                |||| |||  |||||||
Sbjct: 23259783 gccggcgcgggcctcgt 23259799



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 147      ccgccgtcgccgctgccggc 166
                ||||||||||||||||||||
Sbjct: 30444346 ccgccgtcgccgctgccggc 30444327
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>emb|AL606653.3|OSJN00104 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0048E02,
             complete sequence
          Length = 121337

 Score =  137 bits (69), Expect = 3e-29
 Identities = 210/257 (81%)
 Strand = Plus / Plus

                                                                         
Query: 137   ttcttcgattccgccgtcgccgctgccggcggagcctacgcctgcgagattgccgccacc 196
             |||||||| |||||||||||||  |||||||| || | |||||||||||| || ||  ||
Sbjct: 97696 ttcttcgactccgccgtcgccgtcgccggcggcgcgttcgcctgcgagatcgcggcggcc 97755

                                                                         
Query: 197   cgccgcggctggctaagccgaggcaatgggagcgtccagttcgattccaccgccaccgca 256
             | |||||| ||||| ||||| ||| | || | |||||||||||  ||| ||||  | || 
Sbjct: 97756 caccgcgggtggctcagccggggccacggcaccgtccagttcggctccgccgcggcggcc 97815

                                                                         
Query: 257   actctcgccggagaactcgcctcctccggtcgcctaccccgcttcctcggctccctcctc 316
              ||  |||||  |  |||||||||||||| ||||| ||||||||||||||| ||||||||
Sbjct: 97816 gctgccgccgcgggcctcgcctcctccggccgcctcccccgcttcctcggcgccctcctc 97875

                                                                         
Query: 317   tccgtctcccctgcccccgcggaccttctcccccgcgcgcccgacctttctctccgcgtg 376
             |||||||||||| ||||||  ||||| ||||| |||||| ||||||| || ||||||| |
Sbjct: 97876 tccgtctccccttcccccgtcgacctcctcccgcgcgcgtccgacctctccctccgcgcg 97935

                              
Query: 377   gccgacgcccgcctcgt 393
             |||| |||  |||||||
Sbjct: 97936 gccggcgcgggcctcgt 97952
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 47      atggcgacggcggcgtcggtgccc 70
               ||||||||||||||||||||||||
Sbjct: 4871270 atggcgacggcggcgtcggtgccc 4871293
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>gb|AF259558.1|AF259558 Rattus norvegicus prostaglandin F2 alpha receptor gene, 5'-flanking
            region and exon 1a, partial sequence
          Length = 2717

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 298  cttcctcggctccctcctctccg 320
            |||||||||||||||||||||||
Sbjct: 2551 cttcctcggctccctcctctccg 2529
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>ref|NM_183628.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1497

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 309 ccctcctctccgtctcccctgccccc 334
           |||||||||||||||||||| |||||
Sbjct: 524 ccctcctctccgtctcccctcccccc 549
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>gb|AC146372.3| Pan troglodytes BAC clone RP43-59I19 from 7, complete sequence
          Length = 148235

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 307   ctccctcctctccgtctcccct 328
             ||||||||||||||||||||||
Sbjct: 99628 ctccctcctctccgtctcccct 99649
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 309      ccctcctctccgtctcccctgccccc 334
                |||||||||||||||||||| |||||
Sbjct: 10673541 ccctcctctccgtctcccctcccccc 10673566
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>dbj|AP002482.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0706B05
          Length = 187835

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 309    ccctcctctccgtctcccctgccccc 334
              |||||||||||||||||||| |||||
Sbjct: 168164 ccctcctctccgtctcccctcccccc 168189
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 49      ggcgacggcggcgtcggtgcc 69
               |||||||||||||||||||||
Sbjct: 1384950 ggcgacggcggcgtcggtgcc 1384930
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>ref|XM_968893.1| PREDICTED: Tribolium castaneum similar to CG13624-PC, isoform C
           (LOC662816), mRNA
          Length = 1635

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 297 gcttcctcggctccctcctct 317
           |||||||||||||||||||||
Sbjct: 976 gcttcctcggctccctcctct 956
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>emb|BX842576.1| Mycobacterium tuberculosis H37Rv complete genome; segment 5/13
          Length = 348264

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 49   ggcgacggcggcgtcggtgcc 69
            |||||||||||||||||||||
Sbjct: 2419 ggcgacggcggcgtcggtgcc 2399
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>emb|BX248338.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment
             5/14
          Length = 299450

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 49    ggcgacggcggcgtcggtgcc 69
             |||||||||||||||||||||
Sbjct: 72106 ggcgacggcggcgtcggtgcc 72086
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 96      ccaatatcccggcctccgccgtcgc 120
               ||||||||| |||||||||||||||
Sbjct: 2887767 ccaatatccaggcctccgccgtcgc 2887791
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 45      cgatggcgacggcggcgtcgg 65
               |||||||||||||||||||||
Sbjct: 1341742 cgatggcgacggcggcgtcgg 1341722
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 45      cgatggcgacggcggcgtcggtgcc 69
               |||||||||||||||||||| ||||
Sbjct: 1107316 cgatggcgacggcggcgtcgttgcc 1107340
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>gb|DQ217304.1| Taeniopygia guttata clone 0065P0012A06 mRNA sequence
          Length = 1045

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 45 cgatggcgacggcggcgtcggtgc 68
          ||||||||||||||||| ||||||
Sbjct: 59 cgatggcgacggcggcggcggtgc 82
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>gb|AC161212.9| Mus musculus chromosome 3, clone RP24-267M11, complete sequence
          Length = 147921

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 309   ccctcctctccgtctcccctgccc 332
             ||||||||||| ||||||||||||
Sbjct: 95380 ccctcctctccttctcccctgccc 95357
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>ref|XM_476678.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1944

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 145 ttccgccgtcgccgctgccg 164
           ||||||||||||||||||||
Sbjct: 237 ttccgccgtcgccgctgccg 256
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>ref|XM_473777.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2415

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 147 ccgccgtcgccgctgccggc 166
           ||||||||||||||||||||
Sbjct: 112 ccgccgtcgccgctgccggc 93
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>gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete
             sequence
          Length = 190055

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    tggcgacggcggcgtcggtg 67
             ||||||||||||||||||||
Sbjct: 47472 tggcgacggcggcgtcggtg 47453
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>gb|BC012964.1| Mus musculus ribosomal protein S6 kinase, polypeptide 4, mRNA (cDNA
            clone MGC:13790 IMAGE:4160873), complete cds
          Length = 3156

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 275  gcctcctccggtcgcctacc 294
            ||||||||||||||||||||
Sbjct: 2335 gcctcctccggtcgcctacc 2354
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>ref|XM_877922.1| PREDICTED: Bos taurus hypothetical protein LOC614636 (LOC614636),
           mRNA
          Length = 951

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 305 ggctccctcctctccgtctcccct 328
           ||||||| ||||||||||||||||
Sbjct: 855 ggctcccgcctctccgtctcccct 878
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>gb|AY596305.1| Chlamydomonas reinhardtii cell wall protein GP2 (GP2) mRNA, partial
           cds
          Length = 4218

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 316 ctccgtctcccctgcccccg 335
           ||||||||||||||||||||
Sbjct: 710 ctccgtctcccctgcccccg 729
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 48       tggcgacggcggcgtcggtg 67
                ||||||||||||||||||||
Sbjct: 21354561 tggcgacggcggcgtcggtg 21354542
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>emb|AL590822.36| Human DNA sequence from clone RP11-181G12 on chromosome 1 Contains the 3'
              end of the PRKCZ gene for protein kinase C zeta, a novel
              gene, a novel gene (FLJ31031), the SKI gene for v-ski
              sarcoma viral oncogene homolog (avian) and five CpG
              islands, complete sequence
          Length = 179836

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 315    tctccgtctcccctgccccc 334
              ||||||||||||||||||||
Sbjct: 168477 tctccgtctcccctgccccc 168458
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>gb|AY167575.1| Oryza sativa (japonica cultivar-group) EDR1 (EDR1) mRNA, complete
           cds
          Length = 3311

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 45  cgatggcgacggcggcgtcg 64
           ||||||||||||||||||||
Sbjct: 130 cgatggcgacggcggcgtcg 111
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>emb|AL022318.2|HS150C2 Human DNA sequence from clone CTA-150C2 on chromosome 22q13.1-13.2,
              complete sequence
          Length = 201143

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 305    ggctccctcctctccgtctcccctgcccccgc 336
              |||||||||| ||| | |||||||||||||||
Sbjct: 156890 ggctccctcccctctggctcccctgcccccgc 156921
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>gb|DQ146365.1| Homo sapiens apolipoprotein B mRNA editing enzyme, catalytic
            polypeptide-like 3F (APOBEC3F) gene, complete cds
          Length = 15687

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 305  ggctccctcctctccgtctcccctgcccccgc 336
            |||||||||| ||| | |||||||||||||||
Sbjct: 969  ggctccctcccctctggctcccctgcccccgc 1000
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 46      gatggcgacggcggcgtcgg 65
               ||||||||||||||||||||
Sbjct: 2269064 gatggcgacggcggcgtcgg 2269083
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>gb|DQ113464.1| Neurospora crassa voucher R. Metzenberg 6204 phospholipase C
           (plc-1) gene, complete cds
          Length = 2198

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 147 ccgccgtcgccgctgccggc 166
           ||||||||||||||||||||
Sbjct: 682 ccgccgtcgccgctgccggc 701
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>emb|AL606638.2|OSJN00077 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041A02,
             complete sequence
          Length = 166804

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 147   ccgccgtcgccgctgccggc 166
             ||||||||||||||||||||
Sbjct: 77723 ccgccgtcgccgctgccggc 77704
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>gb|AC106799.3| Homo sapiens chromosome 5 clone RP11-445O3, complete sequence
          Length = 176095

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 306   gctccctcctctccgtctcccctg 329
             |||||||||||||| |||||||||
Sbjct: 25672 gctccctcctctccttctcccctg 25649
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>gb|AC104305.2| Homo sapiens chromosome 3 clone RP11-523D22, complete sequence
          Length = 149858

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 25    ttctgttccccccaaaattc 44
             ||||||||||||||||||||
Sbjct: 21131 ttctgttccccccaaaattc 21150
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>dbj|AK154674.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630103A01
            product:ribosomal protein S6 kinase, polypeptide 4, full
            insert sequence
          Length = 3130

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 275  gcctcctccggtcgcctacc 294
            ||||||||||||||||||||
Sbjct: 2324 gcctcctccggtcgcctacc 2343
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>gb|AY864330.1| Chrysodeixis chalcites nucleopolyhedrovirus, complete genome
          Length = 149622

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 236  ttcgattccaccgccaccgc 255
            ||||||||||||||||||||
Sbjct: 1314 ttcgattccaccgccaccgc 1295



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 236  ttcgattccaccgccaccgc 255
            ||||||||||||||||||||
Sbjct: 1272 ttcgattccaccgccaccgc 1253
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 235     gttcgattccaccgccaccg 254
               ||||||||||||||||||||
Sbjct: 4710203 gttcgattccaccgccaccg 4710184
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>dbj|AK004412.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length
           enriched library, clone:1110069D02 product:ribosomal
           protein S6 kinase, polypeptide 4, full insert sequence
          Length = 1733

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 275 gcctcctccggtcgcctacc 294
           ||||||||||||||||||||
Sbjct: 929 gcctcctccggtcgcctacc 948
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 145     ttccgccgtcgccgctgccg 164
               ||||||||||||||||||||
Sbjct: 3141201 ttccgccgtcgccgctgccg 3141182
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 48       tggcgacggcggcgtcggtg 67
                ||||||||||||||||||||
Sbjct: 21347590 tggcgacggcggcgtcggtg 21347571
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>gb|AC105049.4| Homo sapiens chromosome 8, clone RP11-299M14, complete sequence
          Length = 92291

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 365   tctctccgcgtggccgacgc 384
             ||||||||||||||||||||
Sbjct: 30774 tctctccgcgtggccgacgc 30755
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>emb|BX813335.2| Mouse DNA sequence from clone RP24-375E5 on chromosome 2, complete
             sequence
          Length = 57516

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 313   cctctccgtctcccctgcccccgc 336
             ||||||| ||||||||||||||||
Sbjct: 15043 cctctccctctcccctgcccccgc 15066
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>dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0455F03
          Length = 158201

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 145   ttccgccgtcgccgctgccg 164
             ||||||||||||||||||||
Sbjct: 56191 ttccgccgtcgccgctgccg 56172
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>dbj|AK120600.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149I02, full
           insert sequence
          Length = 3058

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 147 ccgccgtcgccgctgccggc 166
           ||||||||||||||||||||
Sbjct: 236 ccgccgtcgccgctgccggc 217
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>dbj|AK069862.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039K07, full
           insert sequence
          Length = 1944

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 145 ttccgccgtcgccgctgccg 164
           ||||||||||||||||||||
Sbjct: 237 ttccgccgtcgccgctgccg 256
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>gb|AC120557.12| Mus musculus chromosome 19, clone RP24-493E6, complete sequence
          Length = 169131

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 275    gcctcctccggtcgcctacc 294
              ||||||||||||||||||||
Sbjct: 168962 gcctcctccggtcgcctacc 168981
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>gb|AF074714.1|AF074714 Mus musculus mitogen- and stress-activated protein kinase-2 (mMSK2)
            mRNA, complete cds
          Length = 3120

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 275  gcctcctccggtcgcctacc 294
            ||||||||||||||||||||
Sbjct: 2297 gcctcctccggtcgcctacc 2316
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 48     tggcgacggcggcgtcggtg 67
              ||||||||||||||||||||
Sbjct: 580872 tggcgacggcggcgtcggtg 580853
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>emb|AL512308.19| Human DNA sequence from clone RP11-164H16 on chromosome 6, complete
             sequence
          Length = 107455

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 307   ctccctcctctccgtctccc 326
             ||||||||||||||||||||
Sbjct: 61798 ctccctcctctccgtctccc 61817



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 307   ctccctcctctccgtctccc 326
             ||||||||||||||||||||
Sbjct: 61783 ctccctcctctccgtctccc 61802



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 307   ctccctcctctccgtctccc 326
             ||||||||||||||||||||
Sbjct: 61768 ctccctcctctccgtctccc 61787



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 307   ctccctcctctccgtctccc 326
             ||||||||||||||||||||
Sbjct: 61753 ctccctcctctccgtctccc 61772



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 307   ctccctcctctccgtctccc 326
             ||||||||||||||||||||
Sbjct: 61717 ctccctcctctccgtctccc 61736



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 307   ctccctcctctccgtctccc 326
             ||||||||||||||||||||
Sbjct: 61521 ctccctcctctccgtctccc 61540



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 307   ctccctcctctccgtctccc 326
             ||||||||||||||||||||
Sbjct: 61422 ctccctcctctccgtctccc 61441



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 307   ctccctcctctccgtctccc 326
             ||||||||||||||||||||
Sbjct: 61407 ctccctcctctccgtctccc 61426



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 307   ctccctcctctccgtctccc 326
             ||||||||||||||||||||
Sbjct: 61371 ctccctcctctccgtctccc 61390



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 307   ctccctcctctccgtctccc 326
             ||||||||||||||||||||
Sbjct: 61356 ctccctcctctccgtctccc 61375
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>emb|BX000490.13| Mouse DNA sequence from clone RP24-96D14 on chromosome 2, complete
             sequence
          Length = 111339

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 313   cctctccgtctcccctgcccccgc 336
             ||||||| ||||||||||||||||
Sbjct: 80644 cctctccctctcccctgcccccgc 80667
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>ref|NM_019924.1| Mus musculus ribosomal protein S6 kinase, polypeptide 4 (Rps6ka4),
            mRNA
          Length = 3120

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 275  gcctcctccggtcgcctacc 294
            ||||||||||||||||||||
Sbjct: 2297 gcctcctccggtcgcctacc 2316
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>gb|U00090.1| Rhizobium sp. NGR234 plasmid pNGR234a, complete sequence
          Length = 536165

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 268    agaactcgcctcctccggtc 287
              ||||||||||||||||||||
Sbjct: 480006 agaactcgcctcctccggtc 479987
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>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
          Length = 2256640

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 148     cgccgtcgccgctgccggcg 167
               ||||||||||||||||||||
Sbjct: 1453898 cgccgtcgccgctgccggcg 1453917
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>emb|AL928593.4| Mouse DNA sequence from clone RP23-100E9 on chromosome 2, complete
             sequence
          Length = 195840

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 309   ccctcctctccgtctcccct 328
             ||||||||||||||||||||
Sbjct: 28236 ccctcctctccgtctcccct 28217


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,517,005
Number of Sequences: 3902068
Number of extensions: 2517005
Number of successful extensions: 79660
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78173
Number of HSP's gapped (non-prelim): 1487
length of query: 396
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 374
effective length of database: 17,147,199,772
effective search space: 6413052714728
effective search space used: 6413052714728
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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