ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl43b06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VG26_BPP22 (P35837) Packaged DNA stabilization protein gp26 30 1.9
2DHP2_CAEBR (Q61YQ1) Dihydropyrimidinase 2 (EC 3.5.2.2) 28 4.1
3Y215_ADE02 (P03291) Hypothetical protein F-215 28 7.0

>VG26_BPP22 (P35837) Packaged DNA stabilization protein gp26|
          Length = 232

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 345 SFTLLSPNTATVSPSAGGEP-LGARARGWMPWTRTPSK 235
           S +L SP   T S S GG+  LGAR  GW   T T +K
Sbjct: 147 SQSLASPLNVTTSYSVGGKKVLGARQTGWTAATGTANK 184



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>DHP2_CAEBR (Q61YQ1) Dihydropyrimidinase 2 (EC 3.5.2.2)|
          Length = 518

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
 Frame = +2

Query: 170 GTGSELLVYDVDAARLVAS--------FRVFDGVRVHGIQXXXXXXXXXXXXDGLTVAVF 325
           G+ ++++V++ +A R ++         F +F+G++VHG+             DG    V 
Sbjct: 391 GSDADIVVWNANATRTISKDTHHHAIDFNIFEGMQVHGVPETTICRGRIVWADGQLRTVQ 450

Query: 326 GERR 337
           G  R
Sbjct: 451 GAGR 454



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>Y215_ADE02 (P03291) Hypothetical protein F-215|
          Length = 215

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = -2

Query: 378 STPAASTRRLRSFTLLS-PNTATVSPSAGGEP---LGARARGWMPWTRTPSKTRKE 223
           ST A+ TR   + +  S P + T SP    EP   +  R R    W ++P KT +E
Sbjct: 7   STAASGTREASTPSRSSWPASPTTSPPPWSEPDAEISRRKRSSSSWPKSPIKTTQE 62


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,604,838
Number of Sequences: 219361
Number of extensions: 174514
Number of successful extensions: 826
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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