Clone Information

BLAST Search Result

Clone Name	bastl43b04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	AMY_THECU (P29750) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alp...	50	2e-06
2	AMYG_NEUCR (P14804) Glucoamylase precursor (EC 3.2.1.3) (Glucan ...	44	1e-04
3	AMY_STRLM (P09794) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alp...	43	2e-04
4	AMY_STRGR (P30270) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alp...	43	2e-04
5	AMYG_ASPOR (P36914) Glucoamylase precursor (EC 3.2.1.3) (Glucan ...	42	3e-04
6	AMY_STRVL (P22998) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alp...	39	0.002
7	K1434_HUMAN (Q9NPB8) Protein KIAA1434	36	0.019
8	CDGT_BACST (P31797) Cyclomaltodextrin glucanotransferase precurs...	34	0.073
9	CDGT_KLEOX (P08704) Cyclomaltodextrin glucanotransferase precurs...	33	0.21
10	CDGT1_BACCI (P30920) Cyclomaltodextrin glucanotransferase precur...	32	0.36
11	CDGT_BACS8 (P17692) Cyclomaltodextrin glucanotransferase precurs...	32	0.36
12	CDGT_BAC11 (P30921) Cyclomaltodextrin glucanotransferase precurs...	32	0.36
13	CDGT2_BACCI (P43379) Cyclomaltodextrin glucanotransferase precur...	32	0.36
14	CDGT_BACS3 (P09121) Cyclomaltodextrin glucanotransferase precurs...	31	0.80
15	AMYB_THETU (P19584) Thermophilic beta-amylase precursor (EC 3.2....	31	0.80
16	CDGT_BACS0 (P05618) Cyclomaltodextrin glucanotransferase precurs...	31	0.80
17	OR6B1_HUMAN (O95007) Olfactory receptor 6B1 (Olfactory receptor ...	30	1.4
18	CDGT2_PAEMA (P31835) Cyclomaltodextrin glucanotransferase precur...	30	1.4
19	CDGT_BACSS (P31747) Cyclomaltodextrin glucanotransferase precurs...	30	1.8
20	QUIA_XANCJ (Q9XD78) Probable quinate dehydrogenase [Pyrroloquino...	30	1.8
21	APBE_CHLMU (Q9PKW2) Thiamine biosynthesis lipoprotein apbE precu...	29	2.3
22	RHO_STRLI (P52157) Transcription termination factor rho (EC 3.6....	29	2.3
23	RPOD_PSEPU (P52327) RNA polymerase sigma factor rpoD (Sigma-70)	29	3.1
24	GEMI5_HUMAN (Q8TEQ6) Gem-associated protein 5 (Gemin5)	28	4.0
25	DTX1_HUMAN (Q86Y01) Protein deltex-1 (Deltex-1) (Deltex1) (hDTX1)	24	5.1
26	SP21_STIAU (Q06823) Spore protein SP21	28	5.2
27	YOR1_BHV1S (Q08104) Hypothetical 16.1 kDa protein (ORF1)	28	5.2
28	Y3475_BRAJA (Q89PK5) Hypothetical transport protein bll3475	28	5.2
29	N4BP3_HUMAN (O15049) NEDD4-binding protein 3 (N4BP3)	28	5.2
30	TSH_DROME (P22265) Protein teashirt	28	6.8
31	RLUC_SHIFL (P0AA40) Ribosomal large subunit pseudouridine syntha...	28	6.8
32	RLUC_SALTY (Q8ZQ16) Ribosomal large subunit pseudouridine syntha...	28	6.8
33	RLUC_ECOLI (P0AA39) Ribosomal large subunit pseudouridine syntha...	28	6.8
34	RLUC_ECOL6 (Q8FIP7) Ribosomal large subunit pseudouridine syntha...	28	6.8
35	RLUC_ECO57 (Q8X8J3) Ribosomal large subunit pseudouridine syntha...	28	6.8
36	VP40_HHV11 (P10210) Capsid protein P40 (Virion structural protei...	28	6.8
37	P25A_BOVIN (Q27957) Tubulin polymerization-promoting protein (TP...	28	6.8
38	DEF1_STRCO (Q9RD27) Peptide deformylase 1 (EC 3.5.1.88) (PDF 1) ...	28	6.8
39	MUTH_ECOL6 (Q8FEA9) DNA mismatch repair protein mutH (Methyl-dir...	28	6.8
40	TOP2_ARATH (P30182) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoi...	27	8.9
41	SRCA_RABIT (P13666) Sarcalumenin precursor	27	8.9
42	GLMU_STRMU (Q8DSX2) Bifunctional protein glmU [Includes: UDP-N-a...	27	8.9
43	CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor	27	8.9
44	GEMI5_MOUSE (Q8BX17) Gem-associated protein 5 (Gemin5)	27	8.9
45	ODO1_BUCBP (Q89AJ7) Oxoglutarate dehydrogenase (EC 1.2.4.2)	27	8.9
46	AGP3_YEAST (P43548) General amino acid permease AGP3	27	8.9
47	YL409_YEAST (Q06078) Hypothetical 104.8 kDa Trp-Asp repeats-cont...	27	8.9
48	DBX1_MOUSE (P52950) Homeobox protein DBX1	27	8.9
49	POLG_HCVJP (Q9DHD6) Genome polyprotein [Contains: Core protein p...	27	8.9
50	MUTH_SHIFL (Q83QC1) DNA mismatch repair protein mutH (Methyl-dir...	27	8.9
51	MUTH_ECOLI (P06722) DNA mismatch repair protein mutH (Methyl-dir...	27	8.9
52	MUTH_ECO57 (Q8X6K2) DNA mismatch repair protein mutH (Methyl-dir...	27	8.9
53	MRAW_XANOR (Q5GW34) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)	27	8.9
54	ILVB_KLETE (Q04524) Acetolactate synthase, catabolic (EC 2.2.1.6...	27	8.9

>AMY_THECU (P29750) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan|
           glucanohydrolase)
          Length = 605

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 27/65 (41%), Positives = 32/65 (49%)
 Frame = +1

Query: 160 TVTVIFKLPYYTQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALVWCGQVSVAAGFT 339
           TVT  F     T +GQ + + GS P LGSW   QG+ L     G   VW G V + AG  
Sbjct: 505 TVTARFHATVTTWYGQEVAVVGSIPELGSWQPAQGVRLR-TDSGTYPVWSGAVDLPAGVG 563

Query: 340 CEYSY 354
            EY Y
Sbjct: 564 FEYKY 568

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>AMYG_NEUCR (P14804) Glucoamylase precursor (EC 3.2.1.3) (Glucan|
           1,4-alpha-glucosidase) (1,4-alpha-D-glucan
           glucohydrolase)
          Length = 626

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
 Frame = +1

Query: 163 VTVIFKLPYYTQWGQSLVIAGSAPALGSWSVKQGLSLS-PVHQGNALVWCGQVSVAAGFT 339
           V V F     T +GQ++ + GS  ALG+W+   G++LS   +  +  +W   +++  G +
Sbjct: 526 VLVTFNEKVTTSYGQTVKVVGSIAALGNWAPASGVTLSAKQYSSSNPLWSTTIALPQGTS 585

Query: 340 CEYSYHVVDDHKNVLRWES 396
            +Y Y VV+   +V +WE+
Sbjct: 586 FKYKYVVVNSDGSV-KWEN 603

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>AMY_STRLM (P09794) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan|
           glucanohydrolase)
          Length = 566

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 26/83 (31%), Positives = 37/83 (44%)
 Frame = +1

Query: 151 GKNTVTVIFKLPYYTQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALVWCGQVSVAA 330
           G    +  F +   T WG+++ + G   ALG+W   + L L P       VW   V +AA
Sbjct: 467 GTGQTSASFHVNATTAWGENIYVTGDQAALGNWDPARALKLDPAAYP---VWKLDVPLAA 523

Query: 331 GFTCEYSYHVVDDHKNVLRWESG 399
           G   +Y Y +  D      WESG
Sbjct: 524 GTPFQYKY-LRKDAAGKAVWESG 545

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>AMY_STRGR (P30270) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan|
           glucanohydrolase)
          Length = 566

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 26/83 (31%), Positives = 37/83 (44%)
 Frame = +1

Query: 151 GKNTVTVIFKLPYYTQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALVWCGQVSVAA 330
           G    +  F +   T WG+++ + G   ALG+W   + L L P       VW   V +AA
Sbjct: 467 GTGQTSASFHVNATTAWGENIYVTGDQAALGNWDPARALKLDPAAYP---VWKLDVPLAA 523

Query: 331 GFTCEYSYHVVDDHKNVLRWESG 399
           G   +Y Y +  D      WESG
Sbjct: 524 GTPFQYKY-LRKDAAGKAVWESG 545

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>AMYG_ASPOR (P36914) Glucoamylase precursor (EC 3.2.1.3) (Glucan|
           1,4-alpha-glucosidase) (1,4-alpha-D-glucan
           glucohydrolase)
          Length = 612

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
 Frame = +1

Query: 160 TVTVIFKLPYYTQWGQSLVIAGSAPALGSWSVKQGLSL-SPVHQGNALVWCGQVSVAAGF 336
           TV+V F +   T +G+S+ I GS   LGSW+     +L +  +  +  +W G +++ AG 
Sbjct: 511 TVSVTFAVKATTVYGESIKIVGSISQLGSWNPSSATALNADSYTTDNPLWTGTINLPAGQ 570

Query: 337 TCEYSYHVVDDHKNVLRWES 396
           + EY +  V +    + WES
Sbjct: 571 SFEYKFIRVQN--GAVTWES 588

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>AMY_STRVL (P22998) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan|
           glucanohydrolase)
          Length = 569

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 26/75 (34%), Positives = 35/75 (46%)
 Frame = +1

Query: 175 FKLPYYTQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALVWCGQVSVAAGFTCEYSY 354
           F +   T  GQ++ + G+   LG+W+    L L P       VW   V + AG + EY Y
Sbjct: 478 FNVTATTVVGQNIYVTGNRAELGNWAPASALKLDP---ATYPVWKLTVGLPAGTSFEYKY 534

Query: 355 HVVDDHKNVLRWESG 399
              D   NV  WESG
Sbjct: 535 IRKDAAGNV-TWESG 548

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>K1434_HUMAN (Q9NPB8) Protein KIAA1434|
          Length = 672

 Score = 36.2 bits (82), Expect = 0.019
 Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +1

Query: 202 GQSLVIAGSAPALGSWSVKQGLSLSPVHQ-GNALVWCGQVSVAAGFTCEYSY 354
           G+   I GS  ALG+W+ +  ++L P +  G +++W   + ++ G + +Y Y
Sbjct: 17  GEVFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSRGVSVQYRY 68

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>CDGT_BACST (P31797) Cyclomaltodextrin glucanotransferase precursor (EC|
           2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase)
          Length = 711

 Score = 34.3 bits (77), Expect = 0.073
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
 Frame = +1

Query: 193 TQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALV-----WCGQVSVAAGFTCEYSYH 357
           T  GQ++ I G+   LG+W   +  ++ P+   N +V     W   VSV  G T E+ + 
Sbjct: 622 TNLGQNIYIVGNVYELGNWDTSK--AIGPMF--NQVVYSYPTWYIDVSVPEGKTIEFKFI 677

Query: 358 VVDDHKNVLRWESG 399
             D   NV  WESG
Sbjct: 678 KKDSQGNV-TWESG 690

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>CDGT_KLEOX (P08704) Cyclomaltodextrin glucanotransferase precursor (EC|
           2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase)
          Length = 655

 Score = 32.7 bits (73), Expect = 0.21
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = +1

Query: 190 YTQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALVWCGQVSVAAGFTCEY---SYHV 360
           YT  GQS+ I G+ P LG W + + + +SP        W   + + +    E+     + 
Sbjct: 570 YTISGQSVYIIGNIPQLGGWDLTKAVKISPTQYPQ---WSASLELPSDLNVEWKCVKRNE 626

Query: 361 VDDHKNVLRWESG 399
            +   NV  W+SG
Sbjct: 627 TNPTANV-EWQSG 638

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>CDGT1_BACCI (P30920) Cyclomaltodextrin glucanotransferase precursor (EC|
           2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase)
          Length = 718

 Score = 32.0 bits (71), Expect = 0.36
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
 Frame = +1

Query: 193 TQWGQSLVIAGSAPALGSWSVKQGLSLSP-----VHQGNALVWCGQVSVAAGFTCEYSYH 357
           T  GQ+L + G+   LG+WS     ++ P     +HQ     W   VSV AG   E+ + 
Sbjct: 630 TTLGQNLYLTGNVAELGNWST-GSTAIGPAFNQVIHQ--YPTWYYDVSVPAGKQLEFKF- 685

Query: 358 VVDDHKNVLRWESG 399
               + + + WESG
Sbjct: 686 -FKKNGSTITWESG 698

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>CDGT_BACS8 (P17692) Cyclomaltodextrin glucanotransferase precursor (EC|
           2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase)
           (Raw-starch-digesting amylase)
          Length = 713

 Score = 32.0 bits (71), Expect = 0.36
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
 Frame = +1

Query: 193 TQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALV-----WCGQVSVAAGFTCEYSYH 357
           T  GQ+L + G+   LG+W   +  ++ P++  N +V     W   VSV AG T E+ + 
Sbjct: 625 TALGQNLYLTGNVSELGNWDPAK--AIGPMY--NQVVYQYPNWYYDVSVPAGKTIEFKF- 679

Query: 358 VVDDHKNVLRWESG 399
            +    + + WE G
Sbjct: 680 -LKKQGSTVTWEGG 692

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>CDGT_BAC11 (P30921) Cyclomaltodextrin glucanotransferase precursor (EC|
           2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase)
          Length = 713

 Score = 32.0 bits (71), Expect = 0.36
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
 Frame = +1

Query: 193 TQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALV-----WCGQVSVAAGFTCEYSYH 357
           T  GQ++ +AGS   LG+W   +  ++ P++  N ++     W   V+V AG T E+ + 
Sbjct: 625 TALGQNVYLAGSVSELGNWDPAK--AIGPLY--NQVIYQYPTWYYDVTVPAGKTIEFKF- 679

Query: 358 VVDDHKNVLRWESG 399
            +    + + WE G
Sbjct: 680 -LKKQGSTVTWEGG 692

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>CDGT2_BACCI (P43379) Cyclomaltodextrin glucanotransferase precursor (EC|
           2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase)
          Length = 713

 Score = 32.0 bits (71), Expect = 0.36
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
 Frame = +1

Query: 193 TQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALV-----WCGQVSVAAGFTCEYSYH 357
           T  GQ++ + GS   LG+W   +  ++ P++  N +V     W   VSV AG T E+ + 
Sbjct: 625 TALGQNVYLTGSVSELGNWDPAK--AIGPMY--NQVVYQYPNWYYDVSVPAGKTIEFKF- 679

Query: 358 VVDDHKNVLRWESG 399
            +    + + WE G
Sbjct: 680 -LKKQGSTVTWEGG 692

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>CDGT_BACS3 (P09121) Cyclomaltodextrin glucanotransferase precursor (EC|
           2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase)
          Length = 712

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
 Frame = +1

Query: 193 TQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALV-----WCGQVSVAAGFTCEYSYH 357
           T  GQ++ + G+   LG+W      ++ P++  N +V     W   VSV AG T E+ + 
Sbjct: 624 TALGQNVFLTGNVSELGNWDPNN--AIGPMY--NQVVYQYPTWYYDVSVPAGQTIEFKF- 678

Query: 358 VVDDHKNVLRWESG 399
            +    + + WE G
Sbjct: 679 -LKKQGSTVTWEGG 691

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>AMYB_THETU (P19584) Thermophilic beta-amylase precursor (EC 3.2.1.2)|
           (1,4-alpha-D-glucan maltohydrolase)
          Length = 551

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = +1

Query: 193 TQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALVWCGQVSVAAGFTCEYSYHVVDDH 372
           T +GQ++ I GS   LG+W+     +  P    N   W   +++  G   ++    +D  
Sbjct: 465 TYYGQNVYIVGSTSDLGNWNTT--YARGPASCPNYPTWTITLNLLPGEQIQFKAVKIDSS 522

Query: 373 KNVLRWESG 399
            NV  WE G
Sbjct: 523 GNV-TWEGG 530

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>CDGT_BACS0 (P05618) Cyclomaltodextrin glucanotransferase precursor (EC|
           2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase)
          Length = 713

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
 Frame = +1

Query: 193 TQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALV-----WCGQVSVAAGFTCEYSYH 357
           T  GQ++ + G+   LG+W      ++ P++  N +V     W   VSV AG T E+ + 
Sbjct: 625 TALGQNVFLTGNVSELGNWDPNN--AIGPMY--NQVVYQYPTWYYDVSVPAGQTIEFKF- 679

Query: 358 VVDDHKNVLRWESG 399
            +    + + WE G
Sbjct: 680 -LKKQGSTVTWEGG 692

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>OR6B1_HUMAN (O95007) Olfactory receptor 6B1 (Olfactory receptor 7-3) (OR7-3)|
          Length = 311

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +1

Query: 235 ALGSWSVKQGLSLSPVHQGNALVWCGQVSVAAGFTCEYS 351
           ALGSW++  G+SL+ ++  + L +CG  +V   F C+ S
Sbjct: 145 ALGSWAIGFGISLAKIYFISCLSFCGP-NVINHFFCDIS 182

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>CDGT2_PAEMA (P31835) Cyclomaltodextrin glucanotransferase precursor (EC|
           2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase)
          Length = 713

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
 Frame = +1

Query: 163 VTVIFKLPYYTQ-WGQSLVIAGSAPALGSWSVKQGLSLSPVH---QGNALVWCGQVSVAA 330
           VTV FK+   T   GQ++ + G+   LG+W+     ++ P++   + +   W   VSV A
Sbjct: 614 VTVRFKVNNATTALGQNVYLTGNVAELGNWTAAN--AIGPMYNQVEASYPTWYFDVSVPA 671

Query: 331 GFTCEYSYHVVDDHKNVLRWESG 399
               ++ +  V+   + + WE G
Sbjct: 672 NTALQFKFIKVNG--STVTWEGG 692

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>CDGT_BACSS (P31747) Cyclomaltodextrin glucanotransferase precursor (EC|
           2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase)
          Length = 718

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
 Frame = +1

Query: 193 TQWGQSLVIAGSAPALGSWSVKQGLSLSP-----VHQGNALVWCGQVSVAAGFTCEYSYH 357
           T  GQ++ + G+   LG+WS     ++ P     +HQ     W   VSV AG   E+ + 
Sbjct: 630 TTLGQNIYLTGNVAELGNWST-GSTAIGPAFNQVIHQ--YPTWYYDVSVPAGKELEFKF- 685

Query: 358 VVDDHKNVLRWESG 399
               + + + WE G
Sbjct: 686 -FKKNGSTITWEGG 698

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>QUIA_XANCJ (Q9XD78) Probable quinate dehydrogenase [Pyrroloquinoline-quinone]|
           (EC 1.1.99.25)
          Length = 790

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
 Frame = -3

Query: 330 GGDRNLATPDQRVPLVNRAQGQPLLDAPGP------ERRRGAGDDEALPPLRVVRQL-ED 172
           GG R  A  DQ    +NR+ G+P   +PGP          G G ++ L PL+V  ++   
Sbjct: 159 GGSR-FAALDQ----INRSNGRPAAGSPGPTTPGEIANSDGNGAEDQLTPLQVGEKVFLC 213

Query: 171 HGHRVLPHLFSEQGRRQWRPRAGMESAAEQ 82
             H  L  L +  G++ WR      S+  Q
Sbjct: 214 TPHNNLIALDASTGKQLWRREINATSSVWQ 243

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>APBE_CHLMU (Q9PKW2) Thiamine biosynthesis lipoprotein apbE precursor|
          Length = 316

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +1

Query: 187 YYTQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALV 303
           YY +WG  +  +G  P+  SW++    +   +H  N+ +
Sbjct: 194 YYVEWGGEIKTSGKHPSGRSWAIASSATPEILHLNNSSI 232

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>RHO_STRLI (P52157) Transcription termination factor rho (EC 3.6.1.-)|
           (ATP-dependent helicase rho)
          Length = 707

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = -3

Query: 336 EAGGDRNLATPDQRVPLVNRA--QGQPLLDAPGPERRRGAGDDEALP 202
           +A   + +  P Q  P VN +  Q  P  DAP   RRR A  D   P
Sbjct: 134 KAAAQQQIEIPGQPTPKVNASAEQAAPADDAPSERRRRRATSDAGSP 180

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>RPOD_PSEPU (P52327) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 614

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
 Frame = -3

Query: 324 DRNLATPDQRVPLVNRAQGQPLLDAPGPERRRGAGDDEALPPLRVVRQLEDHGHRVLPHL 145
           D N+A P + VP+          +A   E     GDDE  P   + R  +       P  
Sbjct: 170 DDNIAAPTEEVPIPGTKAAAAKEEADDDEEESEGGDDEEEPKAALTRSSQPSVSVRYPSS 229

Query: 144 FSE-QGRRQWR 115
           FS+ QG  + R
Sbjct: 230 FSDHQGPEEKR 240

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>GEMI5_HUMAN (Q8TEQ6) Gem-associated protein 5 (Gemin5)|
          Length = 1508

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 228 GAGDDEALPPLRVVRQLEDHGHRVLPHLFS 139
           GAG+    PP RV+ +L  H  RV    FS
Sbjct: 44  GAGESPGTPPFRVIGELVGHTERVSGFTFS 73

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>DTX1_HUMAN (Q86Y01) Protein deltex-1 (Deltex-1) (Deltex1) (hDTX1)|
          Length = 620

 Score = 24.3 bits (51), Expect(2) = 5.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 279 RAQGQPLLDAPGPERRRGAGDDEALPP 199
           R  GQ  L+ PGP+R        ++PP
Sbjct: 287 RTPGQNNLNRPGPQRTTSVSARASIPP 313



 Score = 22.3 bits (46), Expect(2) = 5.1
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 322 PKPGHTRPARSPGEPG 275
           P P    P RSPG PG
Sbjct: 269 PAPPPGAPPRSPGAPG 284

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>SP21_STIAU (Q06823) Spore protein SP21|
          Length = 188

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 207 EPRHRRLRAGARVLERQAGAVPEPGSPGERAGLVWPGF 320
           +P+  ++ +     +    A P P  PG  A L WPGF
Sbjct: 150 QPKRIQVASSGTEQKEHIKAYPAPAEPGLAAPLGWPGF 187

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>YOR1_BHV1S (Q08104) Hypothetical 16.1 kDa protein (ORF1)|
          Length = 148

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
 Frame = -3

Query: 306 PDQRVPLVNRAQGQPLL---DAPG--PERRRGAGDDEALP----PLRVVRQLEDHGHRVL 154
           P    P+V     +PLL    APG  P+R  GA   E +P    PL+  RQL D     L
Sbjct: 57  PPDYFPVV--PSSKPLLVKVPAPGASPDRTGGAVHFECVPAPRRPLQFFRQLYDGTFVKL 114

Query: 153 PHLFSEQ 133
           PH F ++
Sbjct: 115 PHNFPDE 121

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>Y3475_BRAJA (Q89PK5) Hypothetical transport protein bll3475|
          Length = 516

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +3

Query: 153 EEHGDRDLQAAVLHAMGAEPRHR----RLRAGARVLERQAGAVPEPG 281
           +EH    L  + + A  A P HR    R+R G RVL+ + G +  PG
Sbjct: 226 DEHSP--LIGSTVAAAEARPEHRLFIHRIRRGERVLQAEPGTILAPG 270

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>N4BP3_HUMAN (O15049) NEDD4-binding protein 3 (N4BP3)|
          Length = 544

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +3

Query: 156 EHGDRDLQAAVLHAMGAEPRHRRLRAGARVLERQAGAVPEPGSPG 290
           E  +R+LQ   L    A+   RRLR   + L  Q G  PEP +PG
Sbjct: 313 ERSERNLQ---LQLFMAQQEQRRLR---KELRAQQGLAPEPRAPG 351

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>TSH_DROME (P22265) Protein teashirt|
          Length = 954

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = -3

Query: 276 AQGQPLLDAPGPER-RRGAGDDE--ALPPLRVVRQLE 175
           A+ +P LDAP PE+ ++G G DE  + P ++  R+ E
Sbjct: 759 AEARPRLDAPTPEKQQQGGGHDEESSKPAIKQEREAE 795

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>RLUC_SHIFL (P0AA40) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 319

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 243 PERRRGAGDDEALPPLRVVRQLEDHGHRVLPHL 145
           PE +  AGD+  +PP+RV  + E+    V PHL
Sbjct: 56  PEYKLEAGDEVRIPPVRVAEREEE---AVSPHL 85

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>RLUC_SALTY (Q8ZQ16) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 319

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 243 PERRRGAGDDEALPPLRVVRQLEDHGHRVLPHL 145
           PE +  AGD+  +PP+RV  + E+    V PHL
Sbjct: 56  PEYKLEAGDEVRIPPVRVAEREEE---AVSPHL 85

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>RLUC_ECOLI (P0AA39) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 319

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 243 PERRRGAGDDEALPPLRVVRQLEDHGHRVLPHL 145
           PE +  AGD+  +PP+RV  + E+    V PHL
Sbjct: 56  PEYKLEAGDEVRIPPVRVAEREEE---AVSPHL 85

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>RLUC_ECOL6 (Q8FIP7) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 319

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 243 PERRRGAGDDEALPPLRVVRQLEDHGHRVLPHL 145
           PE +  AGD+  +PP+RV  + E+    V PHL
Sbjct: 56  PEYKLEAGDEVRIPPVRVAEREEE---AVSPHL 85

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>RLUC_ECO57 (Q8X8J3) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 319

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 243 PERRRGAGDDEALPPLRVVRQLEDHGHRVLPHL 145
           PE +  AGD+  +PP+RV  + E+    V PHL
Sbjct: 56  PEYKLEAGDEVRIPPVRVAEREEE---AVSPHL 85

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>VP40_HHV11 (P10210) Capsid protein P40 (Virion structural protein UL26)|
           [Contains: Capsid protein VP24 (EC 3.4.21.97)
           (Assemblin) (Protease); Capsid protein VP22A; UL26.5
           protein; C-terminal peptide]
          Length = 635

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +3

Query: 201 GAEPRHRRLRA--GARVLERQAGAVPEPGSPGERAGLVWPGFGRRR 332
           G  P   ++ A  GA   +RQAG  P  G PG R      G G+RR
Sbjct: 389 GPSPLEAQIAALVGAIAADRQAGGQPAAGDPGVR------GSGKRR 428

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>P25A_BOVIN (Q27957) Tubulin polymerization-promoting protein (TPPP) (25 kDa|
           brain-specific protein) (p25-alpha)
          Length = 218

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 325 RPKPGHTRPARSPGEP 278
           RPKP +  P +SPGEP
Sbjct: 5   RPKPANKTPPKSPGEP 20

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>DEF1_STRCO (Q9RD27) Peptide deformylase 1 (EC 3.5.1.88) (PDF 1) (Polypeptide|
           deformylase 1)
          Length = 218

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 23/58 (39%), Positives = 27/58 (46%)
 Frame = -3

Query: 315 LATPDQRVPLVNRAQGQPLLDAPGPERRRGAGDDEALPPLRVVRQLEDHGHRVLPHLF 142
           + TP  RVPL  R   + LL   GP     AGD    P LR  R  E +  +V P LF
Sbjct: 1   MGTPSDRVPLAERV--EELLAVGGPLPIVAAGD----PVLR--RAAEPYDGQVAPALF 50

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>MUTH_ECOL6 (Q8FEA9) DNA mismatch repair protein mutH (Methyl-directed mismatch|
           repair protein)
          Length = 228

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 303 DQRVPLVNRAQGQPLLDAPGPERRRGAGDD-EALPPLRVVRQLE 175
           ++ +PL  R  G PLL +P  E  R   +D E L  + V+ Q+E
Sbjct: 127 ERSIPLAKRRVGSPLLWSPNEEEDRQLREDWEELMDMIVLGQIE 170

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>TOP2_ARATH (P30182) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)|
          Length = 1473

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +1

Query: 121 LAPSLLAEEMGKNTVTVIFKLPYYTQWGQSLVIAGSAPALGSWSVK--QGLSLSPVHQG 291
           + P + A   G   V   + +P Y +W +SL   G+A     W +K  +GL  S   +G
Sbjct: 572 ITPIVKATRKGTKKVLSFYSMPEYEEWKESL--KGNAT---GWDIKYYKGLGTSTAEEG 625

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>SRCA_RABIT (P13666) Sarcalumenin precursor|
          Length = 908

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 306 PDQRVPLVNRAQGQPLLDAPGPERRRGAGDDEALPP 199
           P+  +P  +  +  P  DA GP   +G     ALPP
Sbjct: 96  PEASLPNASATESAPPGDATGPREEQGPAAASALPP 131

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>GLMU_STRMU (Q8DSX2) Bifunctional protein glmU [Includes:|
           UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
           (N-acetylglucosamine-1-phosphate uridyltransferase);
           Glucosamine-1-phosphate N-acetyltransferase (EC
           2.3.1.157)]
          Length = 459

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/68 (25%), Positives = 30/68 (44%)
 Frame = +1

Query: 133 LLAEEMGKNTVTVIFKLPYYTQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALVWCG 312
           L +E++G     ++ +       GQ+LVIAG  P +   S+K  L     H+  A +   
Sbjct: 71  LQSEQLGTGHAVMMAESSLAELEGQTLVIAGDTPLIRGESLKNLLHYHKSHKNVATILTA 130

Query: 313 QVSVAAGF 336
           +     G+
Sbjct: 131 EADDPFGY 138

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>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/38 (42%), Positives = 17/38 (44%)
 Frame = +3

Query: 204 AEPRHRRLRAGARVLERQAGAVPEPGSPGERAGLVWPG 317
           A P   R +AG        GA  EPG PGER     PG
Sbjct: 557 AGPPGARGQAGVMGFPGPKGAAGEPGKPGERGAPGPPG 594

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>GEMI5_MOUSE (Q8BX17) Gem-associated protein 5 (Gemin5)|
          Length = 1502

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -3

Query: 228 GAGDDEALPPLRVVRQLEDHGHRVLPHLFS 139
           GAG     PP RVV +L  H  RV    FS
Sbjct: 44  GAGASPGAPPFRVVGELVGHTERVSGFTFS 73

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>ODO1_BUCBP (Q89AJ7) Oxoglutarate dehydrogenase (EC 1.2.4.2)|
          Length = 916

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 286 QGNALVWCGQVSVAAGFTCEYSYHVVDDHKNVLR-WES 396
           QGN  +W   +S  A    EY Y +  D KN L  WE+
Sbjct: 631 QGNFYIWDSVLSEEATLAFEYGYSI--DQKNTLNVWEA 666

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>AGP3_YEAST (P43548) General amino acid permease AGP3|
          Length = 558

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +1

Query: 223 GSAPALGSWSVKQGLSLSPVHQGNALVWCGQVSVAAGFTCEYSYHV 360
           G AP + +W+ ++G+ +  +   NAL     ++V+ G    YSY V
Sbjct: 363 GLAPKILAWTDRRGVPIPAITVFNALGLISLMNVSVGAANAYSYIV 408

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>YL409_YEAST (Q06078) Hypothetical 104.8 kDa Trp-Asp repeats-containing protein|
           in RPL31B-VIP1 intergenic region
          Length = 939

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 195 RVVRQLEDHGHRVLPHLFSEQGRRQWRPRAGMES 94
           RVVRQL  H +R+    FS +GR  W   A ++S
Sbjct: 576 RVVRQLWGHSNRITAFDFSPEGR--WIVSASLDS 607

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>DBX1_MOUSE (P52950) Homeobox protein DBX1|
          Length = 335

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -3

Query: 318 NLATPDQRVPLVNRAQGQPLLDAPGPERRRGAGDDEALPP 199
           +L+ P Q  P      G   L +PG   RRG+    AL P
Sbjct: 62  SLSPPSQEAPAALADSGTSDLGSPGSGSRRGSSPQTALSP 101

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>POLG_HCVJP (Q9DHD6) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3032

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
 Frame = +1

Query: 208  SLVIAGSAPA-----LGSWSVKQGLSLSPVHQGNALVWCGQVSVAAG 333
            SL+I G   A     L +W+VK  L L+P+ + + L   G  +V AG
Sbjct: 2951 SLIIQGGRAATCGRYLFNWAVKTKLKLTPLPEASRLDLSGWFTVGAG 2997

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>MUTH_SHIFL (Q83QC1) DNA mismatch repair protein mutH (Methyl-directed mismatch|
           repair protein)
          Length = 228

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 303 DQRVPLVNRAQGQPLLDAPGPERRRGAGDD-EALPPLRVVRQLE 175
           ++ +PL  R  G PLL +P  E  R   +D E L  + V+ Q+E
Sbjct: 127 ERSIPLAQRRVGSPLLWSPNEEEDRQLREDWEELMDMIVLGQVE 170

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>MUTH_ECOLI (P06722) DNA mismatch repair protein mutH (Methyl-directed mismatch|
           repair protein)
          Length = 228

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 303 DQRVPLVNRAQGQPLLDAPGPERRRGAGDD-EALPPLRVVRQLE 175
           ++ +PL  R  G PLL +P  E  R   +D E L  + V+ Q+E
Sbjct: 127 ERSIPLAQRRVGSPLLWSPNEEEDRQLREDWEELMDMIVLGQVE 170

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>MUTH_ECO57 (Q8X6K2) DNA mismatch repair protein mutH (Methyl-directed mismatch|
           repair protein)
          Length = 228

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 303 DQRVPLVNRAQGQPLLDAPGPERRRGAGDD-EALPPLRVVRQLE 175
           ++ +PL  R  G PLL +P  E  R   +D E L  + V+ Q+E
Sbjct: 127 ERSIPLAQRRVGSPLLWSPNEEEDRQLREDWEELMDMIVLGQVE 170

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>MRAW_XANOR (Q5GW34) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)|
          Length = 337

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 225 LRAGARVLERQAGAVPEPGSP 287
           LR G  +LER++G +P P SP
Sbjct: 308 LRIGDSLLERRSGRIPNPQSP 328

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>ILVB_KLETE (Q04524) Acetolactate synthase, catabolic (EC 2.2.1.6) (ALS)|
          Length = 559

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -3

Query: 321 RNLATPDQRVPLVNRAQGQPLLDAPGPERRRGAGDDE-ALPPLRVVRQLED 172
           R + TP     L +R + + LLD      RRGA  ++ AL PLR+VR ++D
Sbjct: 338 RLVLTPQAADILADRQRQRELLD------RRGAQLNQFALHPLRIVRAMQD 382


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,501,923
Number of Sequences: 219361
Number of extensions: 1103954
Number of successful extensions: 4440
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 3998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4434
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result