ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl43b03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 264 bits (133), Expect = 2e-67 Identities = 250/289 (86%) Strand = Plus / Plus Query: 130 gaaaatggggctgttccgggccgcgtcgggtttagcccgggtggcgctgcggaggagcct 189 |||||||||| ||| ||||| ||||| || || || |||||||||||| |||||| ||| Sbjct: 19187329 gaaaatggggtggtttcgggctgcgtccggattggctcgggtggcgctgaggaggaacct 19187388 Query: 190 gtcgcccgctccggcgagcccgttcgccggccccgcgccgcggtacttccactcgacgct 249 | ||| |||||||||| ||| || ||||| || ||||| |||||||||||||| || | Sbjct: 19187389 ggcgcgtgctccggcgaacccttttgccggtcctgcgccacggtacttccactccacccg 19187448 Query: 250 cccccggcggtacgcggcgcctgagccccgcgccgtgccgctctcgcgcctcacaggcag 309 ||||||||||| ||| || |||| |||||||||||||||||||||||||||||| | ||| Sbjct: 19187449 cccccggcggttcgccgctcctgtgccccgcgccgtgccgctctcgcgcctcaccgacag 19187508 Query: 310 cttcctcgatgggaccagcagcgtgtacctcgaggagctgcagcgggcgtgggaggcgga 369 |||||| ||||| ||||||||||||||||| |||||||| ||| ||||||||||||| || Sbjct: 19187509 cttccttgatggcaccagcagcgtgtaccttgaggagctccagagggcgtgggaggctga 19187568 Query: 370 cccgacctccgtcgacgagtcctgggacaacttcttccggaactttgtc 418 || ||||| |||||||||||||||||||| ||||| |||||||||||| Sbjct: 19187569 tcccacctctgtcgacgagtcctgggacaatttctttcggaactttgtc 19187617 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 atctttctcctcttcccctc 20 |||||||||||||||||||| Sbjct: 13847316 atctttctcctcttcccctc 13847297
>dbj|AK098921.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N21, full insert sequence Length = 3612 Score = 264 bits (133), Expect = 2e-67 Identities = 250/289 (86%) Strand = Plus / Plus Query: 130 gaaaatggggctgttccgggccgcgtcgggtttagcccgggtggcgctgcggaggagcct 189 |||||||||| ||| ||||| ||||| || || || |||||||||||| |||||| ||| Sbjct: 271 gaaaatggggtggtttcgggctgcgtccggattggctcgggtggcgctgaggaggaacct 330 Query: 190 gtcgcccgctccggcgagcccgttcgccggccccgcgccgcggtacttccactcgacgct 249 | ||| |||||||||| ||| || ||||| || ||||| |||||||||||||| || | Sbjct: 331 ggcgcgtgctccggcgaacccttttgccggtcctgcgccacggtacttccactccacccg 390 Query: 250 cccccggcggtacgcggcgcctgagccccgcgccgtgccgctctcgcgcctcacaggcag 309 ||||||||||| ||| || |||| |||||||||||||||||||||||||||||| | ||| Sbjct: 391 cccccggcggttcgccgctcctgtgccccgcgccgtgccgctctcgcgcctcaccgacag 450 Query: 310 cttcctcgatgggaccagcagcgtgtacctcgaggagctgcagcgggcgtgggaggcgga 369 |||||| ||||| ||||||||||||||||| |||||||| ||| ||||||||||||| || Sbjct: 451 cttccttgatggcaccagcagcgtgtaccttgaggagctccagagggcgtgggaggctga 510 Query: 370 cccgacctccgtcgacgagtcctgggacaacttcttccggaactttgtc 418 || ||||| |||||||||||||||||||| ||||| |||||||||||| Sbjct: 511 tcccacctctgtcgacgagtcctgggacaatttctttcggaactttgtc 559
>dbj|AK068713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013161L21, full insert sequence Length = 2576 Score = 264 bits (133), Expect = 2e-67 Identities = 250/289 (86%) Strand = Plus / Plus Query: 130 gaaaatggggctgttccgggccgcgtcgggtttagcccgggtggcgctgcggaggagcct 189 |||||||||| ||| ||||| ||||| || || || |||||||||||| |||||| ||| Sbjct: 261 gaaaatggggtggtttcgggctgcgtccggattggctcgggtggcgctgaggaggaacct 320 Query: 190 gtcgcccgctccggcgagcccgttcgccggccccgcgccgcggtacttccactcgacgct 249 | ||| |||||||||| ||| || ||||| || ||||| |||||||||||||| || | Sbjct: 321 ggcgcgtgctccggcgaacccttttgccggtcctgcgccacggtacttccactccacccg 380 Query: 250 cccccggcggtacgcggcgcctgagccccgcgccgtgccgctctcgcgcctcacaggcag 309 ||||||||||| ||| || |||| |||||||||||||||||||||||||||||| | ||| Sbjct: 381 cccccggcggttcgccgctcctgtgccccgcgccgtgccgctctcgcgcctcaccgacag 440 Query: 310 cttcctcgatgggaccagcagcgtgtacctcgaggagctgcagcgggcgtgggaggcgga 369 |||||| ||||| ||||||||||||||||| |||||||| ||| ||||||||||||| || Sbjct: 441 cttccttgatggcaccagcagcgtgtaccttgaggagctccagagggcgtgggaggctga 500 Query: 370 cccgacctccgtcgacgagtcctgggacaacttcttccggaactttgtc 418 || ||||| |||||||||||||||||||| ||||| |||||||||||| Sbjct: 501 tcccacctctgtcgacgagtcctgggacaatttctttcggaactttgtc 549
>dbj|AK067777.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116O03, full insert sequence Length = 3581 Score = 264 bits (133), Expect = 2e-67 Identities = 250/289 (86%) Strand = Plus / Plus Query: 130 gaaaatggggctgttccgggccgcgtcgggtttagcccgggtggcgctgcggaggagcct 189 |||||||||| ||| ||||| ||||| || || || |||||||||||| |||||| ||| Sbjct: 317 gaaaatggggtggtttcgggctgcgtcaggattggctcgggtggcgctgaggaggaacct 376 Query: 190 gtcgcccgctccggcgagcccgttcgccggccccgcgccgcggtacttccactcgacgct 249 | ||| |||||||||| ||| || ||||| || ||||| |||||||||||||| || | Sbjct: 377 ggcgcgtgctccggcgaacccttttgccggtcctgcgccacggtacttccactccacccg 436 Query: 250 cccccggcggtacgcggcgcctgagccccgcgccgtgccgctctcgcgcctcacaggcag 309 ||||||||||| ||| || |||| |||||||||||||||||||||||||||||| | ||| Sbjct: 437 cccccggcggttcgccgctcctgtgccccgcgccgtgccgctctcgcgcctcaccgacag 496 Query: 310 cttcctcgatgggaccagcagcgtgtacctcgaggagctgcagcgggcgtgggaggcgga 369 |||||| ||||| ||||||||||||||||| |||||||| ||| ||||||||||||| || Sbjct: 497 cttccttgatggcaccagcagcgtgtaccttgaggagctccagagggcgtgggaggctga 556 Query: 370 cccgacctccgtcgacgagtcctgggacaacttcttccggaactttgtc 418 || ||||| |||||||||||||||||||| ||||| |||||||||||| Sbjct: 557 tcccacctctgtcgacgagtcctgggacaatttctttcggaactttgtc 605
>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21, complete sequence Length = 151936 Score = 250 bits (126), Expect = 3e-63 Identities = 250/290 (86%), Gaps = 1/290 (0%) Strand = Plus / Plus Query: 130 gaaaatggggctgttccgggccgcgtcgggtttagcccgggtggcgctgcg-gaggagcc 188 |||||||||| ||| ||||| ||||| || || || |||||||||||| | ||||| || Sbjct: 120850 gaaaatggggtggtttcgggctgcgtccggattggctcgggtggcgctgagtgaggaacc 120909 Query: 189 tgtcgcccgctccggcgagcccgttcgccggccccgcgccgcggtacttccactcgacgc 248 || ||| |||||||||| ||| || ||||| || ||||| |||||||||||||| || | Sbjct: 120910 tggcgcgtgctccggcgaacccttttgccggtcctgcgccacggtacttccactccaccc 120969 Query: 249 tcccccggcggtacgcggcgcctgagccccgcgccgtgccgctctcgcgcctcacaggca 308 ||||||||||| ||| || |||| |||||||||||||||||||||||||||||| | || Sbjct: 120970 gcccccggcggttcgccgctcctgtgccccgcgccgtgccgctctcgcgcctcaccgaca 121029 Query: 309 gcttcctcgatgggaccagcagcgtgtacctcgaggagctgcagcgggcgtgggaggcgg 368 ||||||| ||||| ||||||||||||||||| |||||||| ||| ||||||||||||| | Sbjct: 121030 gcttccttgatggcaccagcagcgtgtaccttgaggagctccagagggcgtgggaggctg 121089 Query: 369 acccgacctccgtcgacgagtcctgggacaacttcttccggaactttgtc 418 | || ||||| |||||||||||||||||||| ||||| |||||||||||| Sbjct: 121090 atcccacctctgtcgacgagtcctgggacaatttctttcggaactttgtc 121139
>ref|XM_479634.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3554 Score = 129 bits (65), Expect = 8e-27 Identities = 122/141 (86%) Strand = Plus / Plus Query: 274 gccccgcgccgtgccgctctcgcgcctcacaggcagcttcctcgatgggaccagcagcgt 333 |||||||||||| ||||| || | || || | |||||||||||| || ||||||||||| Sbjct: 415 gccccgcgccgtcccgctgtccaggcttaccgacagcttcctcgacggcaccagcagcgt 474 Query: 334 gtacctcgaggagctgcagcgggcgtgggaggcggacccgacctccgtcgacgagtcctg 393 |||||||||||||| ||||| || |||||||| ||||| ||||||||||||| ||||| Sbjct: 475 ctacctcgaggagctccagcgcgcatgggaggccgacccctcctccgtcgacgaatcctg 534 Query: 394 ggacaacttcttccggaactt 414 ||||||||||||||| ||||| Sbjct: 535 ggacaacttcttccgcaactt 555
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 129 bits (65), Expect = 8e-27 Identities = 122/141 (86%) Strand = Plus / Plus Query: 274 gccccgcgccgtgccgctctcgcgcctcacaggcagcttcctcgatgggaccagcagcgt 333 |||||||||||| ||||| || | || || | |||||||||||| || ||||||||||| Sbjct: 29603810 gccccgcgccgtcccgctgtccaggcttaccgacagcttcctcgacggcaccagcagcgt 29603869 Query: 334 gtacctcgaggagctgcagcgggcgtgggaggcggacccgacctccgtcgacgagtcctg 393 |||||||||||||| ||||| || |||||||| ||||| ||||||||||||| ||||| Sbjct: 29603870 ctacctcgaggagctccagcgcgcatgggaggccgacccctcctccgtcgacgaatcctg 29603929 Query: 394 ggacaacttcttccggaactt 414 ||||||||||||||| ||||| Sbjct: 29603930 ggacaacttcttccgcaactt 29603950
>dbj|AP005199.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0627E10 Length = 163388 Score = 129 bits (65), Expect = 8e-27 Identities = 122/141 (86%) Strand = Plus / Plus Query: 274 gccccgcgccgtgccgctctcgcgcctcacaggcagcttcctcgatgggaccagcagcgt 333 |||||||||||| ||||| || | || || | |||||||||||| || ||||||||||| Sbjct: 130482 gccccgcgccgtcccgctgtccaggcttaccgacagcttcctcgacggcaccagcagcgt 130541 Query: 334 gtacctcgaggagctgcagcgggcgtgggaggcggacccgacctccgtcgacgagtcctg 393 |||||||||||||| ||||| || |||||||| ||||| ||||||||||||| ||||| Sbjct: 130542 ctacctcgaggagctccagcgcgcatgggaggccgacccctcctccgtcgacgaatcctg 130601 Query: 394 ggacaacttcttccggaactt 414 ||||||||||||||| ||||| Sbjct: 130602 ggacaacttcttccgcaactt 130622
>dbj|AK100482.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023097A04, full insert sequence Length = 3554 Score = 129 bits (65), Expect = 8e-27 Identities = 122/141 (86%) Strand = Plus / Plus Query: 274 gccccgcgccgtgccgctctcgcgcctcacaggcagcttcctcgatgggaccagcagcgt 333 |||||||||||| ||||| || | || || | |||||||||||| || ||||||||||| Sbjct: 415 gccccgcgccgtcccgctgtccaggcttaccgacagcttcctcgacggcaccagcagcgt 474 Query: 334 gtacctcgaggagctgcagcgggcgtgggaggcggacccgacctccgtcgacgagtcctg 393 |||||||||||||| ||||| || |||||||| ||||| ||||||||||||| ||||| Sbjct: 475 ctacctcgaggagctccagcgcgcatgggaggccgacccctcctccgtcgacgaatcctg 534 Query: 394 ggacaacttcttccggaactt 414 ||||||||||||||| ||||| Sbjct: 535 ggacaacttcttccgcaactt 555
>dbj|AP006099.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT03D07, TM0180a, complete sequence Length = 76444 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 380 gtcgacgagtcctgggacaacttcttccggaactttgt 417 ||||||||||| |||||||| |||||| |||||||||| Sbjct: 72161 gtcgacgagtcttgggacaatttcttcaggaactttgt 72198
>ref|NM_184141.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1870 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 10 ctcttcccctcgcggcggcgtc 31 |||||||||||||||||||||| Sbjct: 80 ctcttcccctcgcggcggcgtc 101
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 10 ctcttcccctcgcggcggcgtc 31 |||||||||||||||||||||| Sbjct: 1170048 ctcttcccctcgcggcggcgtc 1170027
>dbj|AP002868.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0698A04 Length = 141079 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 10 ctcttcccctcgcggcggcgtc 31 |||||||||||||||||||||| Sbjct: 139362 ctcttcccctcgcggcggcgtc 139341
>dbj|AP002487.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0684C01 Length = 78600 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 10 ctcttcccctcgcggcggcgtc 31 |||||||||||||||||||||| Sbjct: 24351 ctcttcccctcgcggcggcgtc 24330
>dbj|AK067227.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098B14, full insert sequence Length = 1873 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 10 ctcttcccctcgcggcggcgtc 31 |||||||||||||||||||||| Sbjct: 80 ctcttcccctcgcggcggcgtc 101
>ref|XM_609891.2| PREDICTED: Bos taurus similar to oxoglutarate dehydrogenase-like (LOC531398), mRNA Length = 4403 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 387 agtcctgggacaacttcttccggaa 411 |||||||||||| |||||||||||| Sbjct: 953 agtcctgggacagcttcttccggaa 977
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 215 gccggccccgcgccgcggtac 235 ||||||||||||||||||||| Sbjct: 3378810 gccggccccgcgccgcggtac 3378830
>gb|BC114064.1| Bos taurus cDNA clone IMAGE:8163658, with apparent retained intron Length = 3987 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 387 agtcctgggacaacttcttccggaa 411 |||||||||||| |||||||||||| Sbjct: 258 agtcctgggacagcttcttccggaa 282
>gb|S69367.1| Pax-6/Pax-QNR=transcription factor {promoter} [Coturnix sp. SP-1993, Genomic, 1513 nt] Length = 1513 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 274 gccccgcgccgtgccgctctc 294 ||||||||||||||||||||| Sbjct: 673 gccccgcgccgtgccgctctc 653
>ref|XM_214261.3| PREDICTED: Rattus norvegicus oxoglutarate dehydrogenase-like (predicted) (Ogdhl_predicted), mRNA Length = 3291 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 387 agtcctgggacaacttcttcc 407 ||||||||||||||||||||| Sbjct: 461 agtcctgggacaacttcttcc 481
>ref|XM_380273.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00097.1) partial mRNA Length = 1749 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 341 gaggagctgcagcgggcgtgggag 364 |||||||||||||||| ||||||| Sbjct: 52 gaggagctgcagcgggagtgggag 75
>emb|CR647832.2|CNS0EYU6 Tetraodon nigroviridis full-length cDNA Length = 1651 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ggtttagcccgggtggcgct 177 |||||||||||||||||||| Sbjct: 1111 ggtttagcccgggtggcgct 1130
>emb|BX572594.1| Rhodopseudomonas palustris CGA009 complete genome; segment 2/16 Length = 348971 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 tcgccggccccgcgccgcgg 232 |||||||||||||||||||| Sbjct: 229143 tcgccggccccgcgccgcgg 229162
>emb|AL731597.3|OSJN00237 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0023J03, complete sequence Length = 175555 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 atctttctcctcttcccctc 20 |||||||||||||||||||| Sbjct: 60975 atctttctcctcttcccctc 60956
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 tcgccggccccgcgccgcgg 232 |||||||||||||||||||| Sbjct: 584216 tcgccggccccgcgccgcgg 584197
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 8 tcctcttcccctcgcggcggcgtc 31 |||||||||| ||||||||||||| Sbjct: 8976600 tcctcttcccttcgcggcggcgtc 8976577
>dbj|AB181459.1| Gibberella zeae genes for hypothetical protein similar to CG15021, hypothetical protein similar to beta-D-galactosidase, hypothetical protein similar to putative membrane protein, complete cds Length = 7931 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 341 gaggagctgcagcgggcgtgggag 364 |||||||||||||||| ||||||| Sbjct: 437 gaggagctgcagcgggagtgggag 460
>gb|CY005851.1| Influenza A virus (A/mallard/Netherlands/12/2000(H7N3)) segment 1, complete sequence Length = 2341 Score = 40.1 bits (20), Expect = 5.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 320 gggaccagcagcgtgtacctcgaggagctgca 351 ||||| |||||||||||| |||||| |||||| Sbjct: 694 gggacaagcagcgtgtacatcgaggtgctgca 725
>dbj|AP005064.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0049G15 Length = 155303 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 8 tcctcttcccctcgcggcggcgtc 31 |||||||||| ||||||||||||| Sbjct: 78262 tcctcttcccttcgcggcggcgtc 78239 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,969,904 Number of Sequences: 3902068 Number of extensions: 2969904 Number of successful extensions: 57548 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57220 Number of HSP's gapped (non-prelim): 323 length of query: 418 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 396 effective length of database: 17,147,199,772 effective search space: 6790291109712 effective search space used: 6790291109712 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
