ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl43b01 |
|---|---|
| Clone Library Name | barley_pub |
>ZBP2_CHICK (Q8UVD9) Zipcode-binding protein 2| Length = 769 Score = 28.5 bits (62), Expect = 5.2 Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 2/20 (10%) Frame = -1 Query: 166 KPPGP--GRPSNPTAPPSEG 113 +PPGP G+P PTAPP +G Sbjct: 644 QPPGPVPGQPPAPTAPPVQG 663
>SCNND_PANTR (O46547) Amiloride-sensitive sodium channel delta-subunit| (Epithelial Na+ channel delta subunit) (Delta ENaC) (Nonvoltage-gated sodium channel 1 delta subunit) (SCNED) (Delta NaCH) Length = 638 Score = 28.5 bits (62), Expect = 5.2 Identities = 11/17 (64%), Positives = 11/17 (64%) Frame = -1 Query: 163 PPGPGRPSNPTAPPSEG 113 PP PG PS P PP EG Sbjct: 28 PPRPGPPSAPPPPPKEG 44
>SCNND_HUMAN (P51172) Amiloride-sensitive sodium channel delta-subunit| (Epithelial Na+ channel delta subunit) (Delta ENaC) (Nonvoltage-gated sodium channel 1 delta subunit) (SCNED) (Delta NaCH) Length = 638 Score = 28.5 bits (62), Expect = 5.2 Identities = 11/17 (64%), Positives = 11/17 (64%) Frame = -1 Query: 163 PPGPGRPSNPTAPPSEG 113 PP PG PS P PP EG Sbjct: 28 PPRPGPPSAPPPPPKEG 44
>BRO1_EMENI (Q6XPR4) Vacuolar protein-sorting protein bro1 (BRO| domain-containing protein 1) Length = 1000 Score = 28.5 bits (62), Expect = 5.2 Identities = 11/17 (64%), Positives = 11/17 (64%) Frame = -1 Query: 163 PPGPGRPSNPTAPPSEG 113 PP P RP PT PPS G Sbjct: 934 PPPPPRPQQPTYPPSTG 950
>TAF4_HUMAN (O00268) Transcription initiation factor TFIID subunit 4| (Transcription initiation factor TFIID 135 kDa subunit) (TAF(II)135) (TAFII-135) (TAFII135) (TAFII-130) (TAFII130) Length = 1085 Score = 28.1 bits (61), Expect = 6.8 Identities = 13/37 (35%), Positives = 17/37 (45%) Frame = +3 Query: 51 PPLLPASIYGXXXXXXXXXXXPSDGGAVGLDGRPGPG 161 PP PA+ P+ GG G+ G+PGPG Sbjct: 298 PP--PAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPG 332
>LIPS_PIG (Q68J42) Hormone-sensitive lipase (EC 3.1.1.79) (HSL)| Length = 764 Score = 27.7 bits (60), Expect = 8.9 Identities = 9/14 (64%), Positives = 10/14 (71%) Frame = -1 Query: 163 PPGPGRPSNPTAPP 122 PPGP P+ PT PP Sbjct: 750 PPGPATPAGPTTPP 763
>CO9A1_HUMAN (P20849) Collagen alpha-1(IX) chain precursor| Length = 921 Score = 27.7 bits (60), Expect = 8.9 Identities = 11/15 (73%), Positives = 11/15 (73%) Frame = +3 Query: 120 DGGAVGLDGRPGPGG 164 D GA GL GRPGP G Sbjct: 785 DSGATGLPGRPGPPG 799
>SSBP2_MOUSE (Q9CYZ8) Single-stranded DNA-binding protein 2 (Sequence-specific| single-stranded-DNA-binding protein 2) Length = 361 Score = 27.7 bits (60), Expect = 8.9 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = -1 Query: 163 PPGPGRPSNPTAPPSEG 113 PPGP RP+ P P S+G Sbjct: 276 PPGPNRPNFPMGPGSDG 292
>SSBP2_HUMAN (P81877) Single-stranded DNA-binding protein 2 (Sequence-specific| single-stranded-DNA-binding protein 2) Length = 361 Score = 27.7 bits (60), Expect = 8.9 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = -1 Query: 163 PPGPGRPSNPTAPPSEG 113 PPGP RP+ P P S+G Sbjct: 276 PPGPNRPNFPMGPGSDG 292 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.127 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 19,818,777 Number of Sequences: 219361 Number of extensions: 238402 Number of successful extensions: 2055 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 1198 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2031 length of database: 80,573,946 effective HSP length: 30 effective length of database: 73,993,116 effective search space used: 1775834784 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
