ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl43a12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YNL0_YEAST (P53927) Hypothetical 25.4 kDa protein in CYB5-LEU4 i... 58 1e-08
2MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phos... 54 1e-07
3MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phos... 49 6e-06
4MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phos... 45 7e-05
5MK67I_MOUSE (Q91VE6) MKI67 FHA domain-interacting nucleolar phos... 43 3e-04
6MK67I_HUMAN (Q9BYG3) MKI67 FHA domain-interacting nucleolar phos... 43 3e-04
7RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 h... 38 0.008
8DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in azoosp... 36 0.032
9RB97D_DROME (Q02926) Ribonucleoprotein RB97D 35 0.055
10ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/... 35 0.072
11ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/... 35 0.072
12RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Co... 35 0.072
13RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (He... 35 0.072
14CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcrip... 35 0.072
15RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-bindin... 35 0.094
16ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1 (... 34 0.12
17ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 ... 34 0.12
18ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1 (... 34 0.16
19G3B2_MOUSE (P97379) Ras-GTPase-activating protein-binding protei... 34 0.16
20G3B2_HUMAN (Q9UN86) Ras-GTPase-activating protein-binding protei... 34 0.16
21ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1 (... 34 0.16
22ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1 (He... 34 0.16
23ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1 (... 34 0.16
24RAVR1_HUMAN (Q8IY67) Protein raver-1 33 0.21
25RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HS... 33 0.21
26RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F... 33 0.21
27ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, ... 33 0.21
28ABT1_HUMAN (Q9ULW3) Activator of basal transcription 1 (hABT1) (... 33 0.27
29RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ss... 33 0.27
30RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 h... 33 0.27
31G3BP_HUMAN (Q13283) Ras-GTPase-activating protein-binding protei... 33 0.36
32CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit... 33 0.36
33CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit... 33 0.36
34G3BP_MOUSE (P97855) Ras-GTPase-activating protein-binding protei... 32 0.46
35ABT1_PONPY (Q5R9Y3) Activator of basal transcription 1 32 0.61
36CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit... 32 0.61
37RAVR1_RAT (Q5XI28) Protein raver-1 32 0.61
38RAVR1_MOUSE (Q9CW46) Protein raver-1 32 0.61
39CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit... 32 0.61
40CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit... 32 0.61
41CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit... 32 0.61
42NSR1_YEAST (P27476) Nuclear localization sequence-binding protei... 32 0.79
43RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial pre... 32 0.79
44TOP2A_HUMAN (P11388) DNA topoisomerase 2-alpha (EC 5.99.1.3) (DN... 32 0.79
45ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (... 32 0.79
46ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precur... 31 1.0
47ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor 31 1.0
48PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic a... 31 1.0
49DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in azoosp... 31 1.4
50PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-bindi... 31 1.4
51SGN1_YEAST (P40561) RNA-binding protein SGN1 31 1.4
52ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1 31 1.4
53DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in azoosp... 31 1.4
54HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (... 31 1.4
55RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2 30 1.8
56GAR2_SCHPO (P41891) Protein gar2 30 1.8
57HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4... 30 1.8
58RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2 30 2.3
59PAX3_MOUSE (P24610) Paired box protein Pax-3 30 2.3
60PAX3_HUMAN (P23760) Paired box protein Pax-3 (HUP2) 30 2.3
61HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hn... 30 2.3
62HORN_MOUSE (Q8VHD8) Hornerin 30 2.3
63HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (... 30 2.3
64HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (... 30 2.3
65RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C... 30 2.3
66RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa ho... 30 2.3
67RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, ch... 30 2.3
68RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15 30 3.0
69RFCL_PYRFU (Q9UWR2) Replication factor C large subunit (RFC larg... 29 3.9
70MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing prote... 29 3.9
71ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B ... 29 3.9
72HUTU_RHIME (Q92V80) Urocanate hydratase (EC 4.2.1.49) (Urocanase... 29 3.9
73RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 h... 29 3.9
74CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (C... 29 3.9
75CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (C... 29 3.9
76TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1) 29 5.1
77TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding p... 29 5.1
78ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B ... 29 5.1
79NISP_LACLA (Q07596) Nisin leader peptide-processing serine prote... 29 5.1
80MYT1L_HUMAN (Q9UL68) Myelin transcription factor 1-like protein ... 29 5.1
81RAVR2_HUMAN (Q9HCJ3) Protein raver-2 29 5.1
82GP152_MOUSE (Q8BXS7) Probable G-protein coupled receptor 152 29 5.1
83SYP_CHLTR (P36431) Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline... 29 5.1
84U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 aux... 29 5.1
85U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 aux... 29 5.1
86HUTU_RHILO (Q983H8) Urocanate hydratase (EC 4.2.1.49) (Urocanase... 29 5.1
87CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long... 29 5.1
88ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC) 29 5.1
89TOP2A_PIG (O46374) DNA topoisomerase 2-alpha (EC 5.99.1.3) (DNA ... 28 6.7
90GVPL_HALME (Q02237) Protein gvpL 28 6.7
91YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 i... 28 6.7
92ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2 28 6.7
93ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (E... 28 6.7
94SNX11_HUMAN (Q9Y5W9) Sorting nexin-11 28 6.7
95TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein) 28 6.7
96TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein) 28 6.7
97PLCB2_HUMAN (Q00722) 1-phosphatidylinositol-4,5-bisphosphate pho... 28 6.7
98YPC4_CAEEL (Q11181) Hypothetical protein C05D10.4 28 6.7
99ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (E... 28 6.7
100ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (P... 28 6.7
101SNX11_MOUSE (Q91WL6) Sorting nexin-11 28 8.8
102ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast prec... 28 8.8
103ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast prec... 28 8.8
104PPIL4_SCHPO (Q9UUE4) Peptidyl-prolyl cis-trans isomerase cyp6 (E... 28 8.8
105IE68_SHV21 (Q01042) Immediate-early protein 28 8.8
106RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA 28 8.8

>YNL0_YEAST (P53927) Hypothetical 25.4 kDa protein in CYB5-LEU4 intergenic|
           region
          Length = 220

 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
 Frame = +3

Query: 222 KEQRIREKKQAEEP--------ENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXX 377
           K +R+  KKQA E         E  + ++Y+  +PHGF+E  +S +F QFG         
Sbjct: 65  KIKRLNPKKQANEKKSKDKKTLEEYSGIIYVSRLPHGFHEKELSKYFAQFGDLKEVRLAR 124

Query: 378 XXXTGKSKHYGFIEF 422
              TG S+HYGF+EF
Sbjct: 125 NKKTGNSRHYGFLEF 139



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>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like|
           (Nucleolar phosphoprotein NOPP34-like protein)
          Length = 269

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 25/75 (33%), Positives = 41/75 (54%)
 Frame = +3

Query: 198 KDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXX 377
           K+    + K Q+++++ Q  +  +   VLY+GH+P G +E  +  +F+QFG         
Sbjct: 20  KEDAEFQKKVQQVKKRPQTGQTLSPG-VLYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSR 78

Query: 378 XXXTGKSKHYGFIEF 422
              TG SK YGF+EF
Sbjct: 79  SKKTGGSKGYGFVEF 93



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>MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phosphoprotein-like|
          Length = 276

 Score = 48.5 bits (114), Expect = 6e-06
 Identities = 27/75 (36%), Positives = 35/75 (46%)
 Frame = +3

Query: 198 KDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXX 377
           KDF   + K   IR K Q      +  V+YIGH+P   YE  +  +F QFG         
Sbjct: 20  KDF---QQKVHEIRRKSQVGAV--SPGVIYIGHIPRALYEPQLREYFSQFGTVTRLRLSR 74

Query: 378 XXXTGKSKHYGFIEF 422
              TG SK Y ++EF
Sbjct: 75  SKKTGNSKGYAYVEF 89



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>MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phosphoprotein-like|
          Length = 278

 Score = 45.1 bits (105), Expect = 7e-05
 Identities = 23/67 (34%), Positives = 32/67 (47%)
 Frame = +3

Query: 222 KEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSK 401
           K   IR K++A     T  V+YIGH+P    E  +  +F QFG            TG SK
Sbjct: 25  KVHDIRRKRKANAL--TPGVIYIGHIPKSLIEPQLQEYFNQFGTVTRLRLSRSKKTGNSK 82

Query: 402 HYGFIEF 422
            Y ++E+
Sbjct: 83  GYAYVEY 89



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>MK67I_MOUSE (Q91VE6) MKI67 FHA domain-interacting nucleolar phosphoprotein|
           (Nucleolar protein interacting with the FHA domain of
           pKI-67) (mNIFK)
          Length = 317

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = +3

Query: 231 RIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYG 410
           R ++ +Q ++ +    V+Y+GH+P    E H+  +  QFG            TG SK Y 
Sbjct: 32  RTKKPQQKKKEKLNRGVVYLGHLPSTLSESHIYNYCAQFGDISRFRLSRSKRTGNSKGYA 91

Query: 411 FIEF 422
           F+EF
Sbjct: 92  FVEF 95



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>MK67I_HUMAN (Q9BYG3) MKI67 FHA domain-interacting nucleolar phosphoprotein|
           (Nucleolar protein interacting with the FHA domain of
           pKI-67) (hNIFK) (Nucleolar phosphoprotein Nopp34)
          Length = 293

 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 22/65 (33%), Positives = 34/65 (52%)
 Frame = +3

Query: 228 QRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHY 407
           +RI ++K+ E+   T  V+Y+ H+P+   E  +  +F QFG            TG SK Y
Sbjct: 31  KRITQRKKQEQL--TPGVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGY 88

Query: 408 GFIEF 422
            F+EF
Sbjct: 89  AFVEF 93



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>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2|
           (hnRNP A2(B))
          Length = 358

 Score = 38.1 bits (87), Expect = 0.008
 Identities = 22/84 (26%), Positives = 37/84 (44%)
 Frame = +3

Query: 171 SAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFG 350
           SA P T DG+    +E K    RE+        T   L++G +     E H+  +F+++G
Sbjct: 68  SARPHTIDGR---VVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYG 124

Query: 351 XXXXXXXXXXXXTGKSKHYGFIEF 422
                       +GK + +GF+ F
Sbjct: 125 KIESTEIITDKQSGKKRGFGFVTF 148



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>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1) (Proline-rich Vg1
           mRNA-binding protein)
          Length = 360

 Score = 36.2 bits (82), Expect = 0.032
 Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 25/124 (20%)
 Frame = +3

Query: 126 LRDKKRNQRR---------------VLSRRSAGPKTGDGKDFLP-------LEGKEQRIR 239
           ++DK  NQ R               VL+ R   P T DG++  P       ++ +  R R
Sbjct: 42  MKDKTTNQSRGFGFVKFKDPNCVGTVLASR---PHTLDGRNIDPKPCTPRGMQPERSRPR 98

Query: 240 EKKQAEEP--ENT-ATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYG 410
           E  Q +EP  EN+ +  +++G +PH   E  +  +F +FG              + + +G
Sbjct: 99  EGWQQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFG 158

Query: 411 FIEF 422
           FI F
Sbjct: 159 FITF 162



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>RB97D_DROME (Q02926) Ribonucleoprotein RB97D|
          Length = 471

 Score = 35.4 bits (80), Expect = 0.055
 Identities = 21/81 (25%), Positives = 36/81 (44%)
 Frame = +3

Query: 180 PKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXX 359
           P   DGK    +E K    R ++++ E   +   L++G +     E+ +  +F QFG   
Sbjct: 94  PHIIDGKT---VEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVV 150

Query: 360 XXXXXXXXXTGKSKHYGFIEF 422
                    TGK + + F+EF
Sbjct: 151 SVKLLTDKTTGKRRGFAFVEF 171



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>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /|
           hnRNP B1)
          Length = 341

 Score = 35.0 bits (79), Expect = 0.072
 Identities = 20/84 (23%), Positives = 37/84 (44%)
 Frame = +3

Query: 171 SAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFG 350
           +A P + DG+    +E K    RE+        T   L++G +     E H+  +F+++G
Sbjct: 68  AARPHSIDGR---VVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYG 124

Query: 351 XXXXXXXXXXXXTGKSKHYGFIEF 422
                       +GK + +GF+ F
Sbjct: 125 KIDTIEIITDRQSGKKRGFGFVTF 148



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>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /|
           hnRNP B1)
          Length = 353

 Score = 35.0 bits (79), Expect = 0.072
 Identities = 20/84 (23%), Positives = 37/84 (44%)
 Frame = +3

Query: 171 SAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFG 350
           +A P + DG+    +E K    RE+        T   L++G +     E H+  +F+++G
Sbjct: 80  AARPHSIDGR---VVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYG 136

Query: 351 XXXXXXXXXXXXTGKSKHYGFIEF 422
                       +GK + +GF+ F
Sbjct: 137 KIDTIEIITDRQSGKKRGFGFVTF 160



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>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of|
           activating protein 1 and estrogen receptors)
           (Coactivator of AP-1 and ERs) (Transcription coactivator
           CAPER)
          Length = 530

 Score = 35.0 bits (79), Expect = 0.072
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +3

Query: 282 LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422
           LY+G +     ED +   F+ FG            TG+SK YGFI F
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITF 298



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>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular|
           carcinoma protein 1) (Splicing factor HCC1)
          Length = 530

 Score = 35.0 bits (79), Expect = 0.072
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +3

Query: 282 LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422
           LY+G +     ED +   F+ FG            TG+SK YGFI F
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITF 298



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>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription|
           termination factor ctf1)
          Length = 363

 Score = 35.0 bits (79), Expect = 0.072
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 279 VLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422
           V+++G++P+   E  M+  F Q G            TG  K YGF EF
Sbjct: 8   VVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55



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>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein|
           23) (RNA-binding region-containing protein 4) (Splicing
           factor SF2)
          Length = 439

 Score = 34.7 bits (78), Expect = 0.094
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +3

Query: 282 LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422
           LY+G +     ED +   F+ FG            TG+SK YGFI F
Sbjct: 265 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITF 311



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>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1)
          Length = 319

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 21/90 (23%), Positives = 38/90 (42%)
 Frame = +3

Query: 153 RVLSRRSAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSC 332
           +V +  +A P   DG+    +E K    RE  Q      T   +++G +     E H+  
Sbjct: 66  KVDAAMNARPHKVDGR---VVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRD 122

Query: 333 FFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422
           +F+Q+G            +GK + + F+ F
Sbjct: 123 YFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 152



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>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP|
           A1) (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1)
          Length = 365

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 20/84 (23%), Positives = 35/84 (41%)
 Frame = +3

Query: 171 SAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFG 350
           +A P   DG+    +E K    RE         T   +++G +     EDH+  +F+Q+G
Sbjct: 73  TARPHKVDGR---VVEPKRAVSREDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYG 129

Query: 351 XXXXXXXXXXXXTGKSKHYGFIEF 422
                       +GK + + F+ F
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTF 153



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>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1) (Unwinding protein 1)
           (UP1) (Fragment)
          Length = 195

 Score = 33.9 bits (76), Expect = 0.16
 Identities = 20/84 (23%), Positives = 35/84 (41%)
 Frame = +3

Query: 171 SAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFG 350
           +A P   DG+    +E K    RE  Q      T   +++G +     E H+  +F+Q+G
Sbjct: 72  NARPHKVDGR---VVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 128

Query: 351 XXXXXXXXXXXXTGKSKHYGFIEF 422
                       +GK + + F+ F
Sbjct: 129 KIEVIEIMTDRGSGKKRGFAFVTF 152



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>G3B2_MOUSE (P97379) Ras-GTPase-activating protein-binding protein 2 (GAP|
           SH3-domain-binding protein 2) (G3BP-2)
          Length = 482

 Score = 33.9 bits (76), Expect = 0.16
 Identities = 21/82 (25%), Positives = 35/82 (42%)
 Frame = +3

Query: 177 GPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXX 356
           GP+ G G D    +   +RI     + +       L++G++PH   E+ +  FF  FG  
Sbjct: 306 GPRPGRG-DMEQNDSDNRRIIRYPDSHQ-------LFVGNLPHDIDENELKEFFMSFGNV 357

Query: 357 XXXXXXXXXXTGKSKHYGFIEF 422
                      GK  ++GF+ F
Sbjct: 358 VELRINTKGVGGKLPNFGFVVF 379



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>G3B2_HUMAN (Q9UN86) Ras-GTPase-activating protein-binding protein 2 (GAP|
           SH3-domain-binding protein 2) (G3BP-2)
          Length = 482

 Score = 33.9 bits (76), Expect = 0.16
 Identities = 21/82 (25%), Positives = 35/82 (42%)
 Frame = +3

Query: 177 GPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXX 356
           GP+ G G D    +   +RI     + +       L++G++PH   E+ +  FF  FG  
Sbjct: 306 GPRPGRG-DMEQNDSDNRRIIRYPDSHQ-------LFVGNLPHDIDENELKEFFMSFGNV 357

Query: 357 XXXXXXXXXXTGKSKHYGFIEF 422
                      GK  ++GF+ F
Sbjct: 358 VELRINTKGVGGKLPNFGFVVF 379



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>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1)
          Length = 371

 Score = 33.9 bits (76), Expect = 0.16
 Identities = 20/84 (23%), Positives = 35/84 (41%)
 Frame = +3

Query: 171 SAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFG 350
           +A P   DG+    +E K    RE  Q      T   +++G +     E H+  +F+Q+G
Sbjct: 72  NARPHKVDGR---VVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 128

Query: 351 XXXXXXXXXXXXTGKSKHYGFIEF 422
                       +GK + + F+ F
Sbjct: 129 KIEVIEIMTDRGSGKKRGFAFVTF 152



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>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1) (HDP)
          Length = 319

 Score = 33.9 bits (76), Expect = 0.16
 Identities = 20/84 (23%), Positives = 35/84 (41%)
 Frame = +3

Query: 171 SAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFG 350
           +A P   DG+    +E K    RE  Q      T   +++G +     E H+  +F+Q+G
Sbjct: 72  NARPHKVDGR---VVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 128

Query: 351 XXXXXXXXXXXXTGKSKHYGFIEF 422
                       +GK + + F+ F
Sbjct: 129 KIEVIEIMTDRGSGKKRGFAFVTF 152



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>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1) (HDP-1)
           (Topoisomerase-inhibitor suppressed)
          Length = 319

 Score = 33.9 bits (76), Expect = 0.16
 Identities = 20/84 (23%), Positives = 35/84 (41%)
 Frame = +3

Query: 171 SAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFG 350
           +A P   DG+    +E K    RE  Q      T   +++G +     E H+  +F+Q+G
Sbjct: 72  NARPHKVDGR---VVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 128

Query: 351 XXXXXXXXXXXXTGKSKHYGFIEF 422
                       +GK + + F+ F
Sbjct: 129 KIEVIEIMTDRGSGKKRGFAFVTF 152



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>RAVR1_HUMAN (Q8IY67) Protein raver-1|
          Length = 606

 Score = 33.5 bits (75), Expect = 0.21
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = +3

Query: 225 EQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKH 404
           + R+RE++ + + + T  +L + ++P    +       + FG            TG+SK 
Sbjct: 115 QSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKG 174

Query: 405 YGFIEF 422
           YGF E+
Sbjct: 175 YGFAEY 180



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>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA|
           binding protein SEB4) (CLL-associated antigen KW-5)
          Length = 216

 Score = 33.5 bits (75), Expect = 0.21
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +3

Query: 258 EPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFI 416
           + + T T +++G +P+   +  +  +F+ FG            TGKS+ YGF+
Sbjct: 5   QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFV 57



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>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1|
           protein) (Protein P11)
          Length = 385

 Score = 33.5 bits (75), Expect = 0.21
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
 Frame = +3

Query: 168 RSAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATV--LYIGHVPHGFYEDHMSCFFQ 341
           ++A P   DG+   P     +R   +++ + P   ATV  L++G +     E+ +  +F+
Sbjct: 82  QNARPHKIDGRTVEP-----KRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFK 136

Query: 342 QFGXXXXXXXXXXXXTGKSKHYGFIEF 422
            FG            TGK + + FIEF
Sbjct: 137 DFGQIVSVNIVSDKDTGKKRGFAFIEF 163



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>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog|
          Length = 342

 Score = 33.5 bits (75), Expect = 0.21
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
 Frame = +3

Query: 168 RSAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATV--LYIGHVPHGFYEDHMSCFFQ 341
           ++A P   DG+   P     +R   + +   PE  ATV  L++G +     E+ +  +F+
Sbjct: 75  QNARPHKVDGRVVEP-----KRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYFK 129

Query: 342 QFGXXXXXXXXXXXXTGKSKHYGFIEF 422
           Q+G            T K + + F+EF
Sbjct: 130 QYGTVVSAAIVVDKETRKKRGFAFVEF 156



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>ABT1_HUMAN (Q9ULW3) Activator of basal transcription 1 (hABT1) (Basal|
           transcriptional activator)
          Length = 272

 Score = 33.1 bits (74), Expect = 0.27
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
 Frame = +3

Query: 210 PLEGKEQRIREKKQAEEPENTAT---------VLYIGHVPHGFYEDHMSCFFQQFG 350
           PLEG EQ +  +++ EE E  A          ++Y+GH+P  F   H+      +G
Sbjct: 15  PLEGTEQTLDAEEEQEESEEAACGSKKRVVPGIVYLGHIPPRFRPLHVRNLLSAYG 70



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>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding|
           protein SEB4)
          Length = 237

 Score = 33.1 bits (74), Expect = 0.27
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +3

Query: 264 ENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFI 416
           + T T +++G +P+   +  +  +F+ FG            TGKS+ YGF+
Sbjct: 28  DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFV 78



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>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1|
           (hnRNP A2(A))
          Length = 346

 Score = 33.1 bits (74), Expect = 0.27
 Identities = 19/81 (23%), Positives = 34/81 (41%)
 Frame = +3

Query: 180 PKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXX 359
           P T DG+    +E K    RE+        T   L++G +     E H+  +F+++G   
Sbjct: 71  PHTIDGR---VVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKID 127

Query: 360 XXXXXXXXXTGKSKHYGFIEF 422
                    +GK + + F+ F
Sbjct: 128 SIEIITDKQSGKKRGFAFVTF 148



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>G3BP_HUMAN (Q13283) Ras-GTPase-activating protein-binding protein 1 (EC|
           3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP
           SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII)
          Length = 466

 Score = 32.7 bits (73), Expect = 0.36
 Identities = 22/98 (22%), Positives = 44/98 (44%)
 Frame = +3

Query: 129 RDKKRNQRRVLSRRSAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHG 308
           RD++  ++R+      GP+       +   G++  I  ++    P++    L+IG++PH 
Sbjct: 299 RDQRVREQRINIPPQRGPRP------IREAGEQGDIEPRRMVRHPDSHQ--LFIGNLPHE 350

Query: 309 FYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422
             +  +  FFQ +G             GK  ++GF+ F
Sbjct: 351 VDKSELKDFFQSYGNVVELRINSG---GKLPNFGFVVF 385



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>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 616

 Score = 32.7 bits (73), Expect = 0.36
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 282 LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422
           +++G++P+   E+ +   F + G            TGK K YGF E+
Sbjct: 18  VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEY 64



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>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 632

 Score = 32.7 bits (73), Expect = 0.36
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 282 LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422
           +++G++P+   E+ +   F + G            TGK K YGF E+
Sbjct: 18  VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEY 64



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>G3BP_MOUSE (P97855) Ras-GTPase-activating protein-binding protein 1 (EC|
           3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP
           SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII)
          Length = 465

 Score = 32.3 bits (72), Expect = 0.46
 Identities = 22/98 (22%), Positives = 43/98 (43%)
 Frame = +3

Query: 129 RDKKRNQRRVLSRRSAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHG 308
           RD++  ++R+      GP+       +   G+   +  ++    P++    L+IG++PH 
Sbjct: 297 RDQRVREQRINIPPQRGPRP------IREAGEPGDVEPRRMVRHPDSHQ--LFIGNLPHE 348

Query: 309 FYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422
             +  +  FFQ FG             GK  ++GF+ F
Sbjct: 349 VDKSELKDFFQNFGNVVELRINSG---GKLPNFGFVVF 383



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>ABT1_PONPY (Q5R9Y3) Activator of basal transcription 1|
          Length = 272

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
 Frame = +3

Query: 210 PLEGKEQRIREKKQAEEPENTAT---------VLYIGHVPHGFYEDHMSCFFQQFG 350
           PL+G EQ +  +++ EE E+ A          ++Y+GH+P  F   H+      +G
Sbjct: 15  PLKGTEQTLDAEEEQEESEDAACGSKKRVVPGIVYLGHIPPRFRPLHVRNLLSAYG 70



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>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 572

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 282 LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422
           +++G++P+   E+ +   F + G            TGK K YGF E+
Sbjct: 18  VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEY 64



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>RAVR1_RAT (Q5XI28) Protein raver-1|
          Length = 748

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 16/66 (24%), Positives = 30/66 (45%)
 Frame = +3

Query: 225 EQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKH 404
           + R+RE++ + + + T  +L + ++P    +       + FG            TG SK 
Sbjct: 115 QSRLRERELSVQLQPTDALLCVANLPPSLTQAQFEELVRPFGSLERCFLVYSERTGHSKG 174

Query: 405 YGFIEF 422
           YGF E+
Sbjct: 175 YGFAEY 180



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>RAVR1_MOUSE (Q9CW46) Protein raver-1|
          Length = 748

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 16/66 (24%), Positives = 30/66 (45%)
 Frame = +3

Query: 225 EQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKH 404
           + R+RE++ + + + T  +L + ++P    +       + FG            TG SK 
Sbjct: 115 QSRLRERELSVQLQPTDALLCVANLPPSLTQAQFEELVRPFGSLERCFLVYSERTGHSKG 174

Query: 405 YGFIEF 422
           YGF E+
Sbjct: 175 YGFAEY 180



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>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 282 LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422
           +++G++P+   E+ +   F + G            TGK K YGF E+
Sbjct: 18  VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEY 64



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>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 580

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 282 LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422
           +++G++P+   E+ +   F + G            TGK K YGF E+
Sbjct: 18  VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEY 64



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>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 282 LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422
           +++G++P+   E+ +   F + G            TGK K YGF E+
Sbjct: 18  VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEY 64



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>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)|
          Length = 414

 Score = 31.6 bits (70), Expect = 0.79
 Identities = 16/69 (23%), Positives = 33/69 (47%)
 Frame = +3

Query: 216 EGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGK 395
           E  E+   +K++ EE E  AT+ ++G +     ++ +   F+  G            T +
Sbjct: 149 EEDEESSNKKQKNEETEEPATI-FVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDR 207

Query: 396 SKHYGFIEF 422
           S+ YG+++F
Sbjct: 208 SRGYGYVDF 216



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>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor|
          Length = 212

 Score = 31.6 bits (70), Expect = 0.79
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +3

Query: 273 ATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422
           +T LYIG +  G  E  +   F  F             TG+S+ YGF+ F
Sbjct: 30  STKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNF 79



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>TOP2A_HUMAN (P11388) DNA topoisomerase 2-alpha (EC 5.99.1.3) (DNA topoisomerase|
            II, alpha isozyme)
          Length = 1531

 Score = 31.6 bits (70), Expect = 0.79
 Identities = 18/49 (36%), Positives = 29/49 (59%)
 Frame = +3

Query: 117  EMGLRDKKRNQRRVLSRRSAGPKTGDGKDFLPLEGKEQRIREKKQAEEP 263
            EM    +K+N++++ +  + G    DG +   LEG +QR+ EKKQ  EP
Sbjct: 1226 EMKAEAEKKNKKKIKNENTEGSPQEDGVE---LEGLKQRL-EKKQKREP 1270



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>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core|
           protein A1-A) (PEN repeat clone P9)
          Length = 365

 Score = 31.6 bits (70), Expect = 0.79
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +3

Query: 228 QRIREKKQAEEPENTATV--LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSK 401
           +R   ++  + P   ATV  L++G +     E  +  +FQ FG            TGK +
Sbjct: 104 KRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKR 163

Query: 402 HYGFIEF 422
            + F+EF
Sbjct: 164 GFAFVEF 170



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>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)|
          Length = 276

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 15/59 (25%), Positives = 30/59 (50%)
 Frame = +3

Query: 240 EKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFI 416
           E ++ +EP   A  L++G++P+    + ++  FQQ G            T +S+ +GF+
Sbjct: 86  ETEEYQEPSEDAK-LFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFV 143



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>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor|
          Length = 315

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +3

Query: 237 REKKQAEEPENT---ATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHY 407
           R  ++ E P  T   +  +Y+G++P G  +  +   F + G            TG+S+ +
Sbjct: 214 RRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGF 273

Query: 408 GFI 416
           GF+
Sbjct: 274 GFV 276



 Score = 29.6 bits (65), Expect = 3.0
 Identities = 14/59 (23%), Positives = 31/59 (52%)
 Frame = +3

Query: 240 EKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFI 416
           E+++ +EP   A  L++G++P+    + ++  F+Q G            T +S+ +GF+
Sbjct: 125 EEEEFQEPPEDAK-LFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFV 182



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>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear|
           (Poly(A)-binding protein) (PABP) (ARS consensus-binding
           protein ACBP-67) (Polyadenylate tail-binding protein)
          Length = 576

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 16/80 (20%), Positives = 33/80 (41%)
 Frame = +3

Query: 183 KTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXX 362
           KT +  + L ++  +++     +++  EN++  LY+G +     E H+   F   G    
Sbjct: 6   KTAEQLENLNIQDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSS 65

Query: 363 XXXXXXXXTGKSKHYGFIEF 422
                   T  S  Y ++ F
Sbjct: 66  IRVCRDAITKTSLGYAYVNF 85



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>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1)
          Length = 406

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 24/123 (19%)
 Frame = +3

Query: 126 LRDKKRNQRR---------------VLSRRSAGPKTGDGKDFLP-------LEGKEQRIR 239
           ++DK  NQ R               VL+ R   P T DG++  P       ++ +  R +
Sbjct: 42  MKDKTTNQSRGFGFVKFKDPNCVGTVLASR---PHTLDGRNIDPKPCTPRGMQPERTRPK 98

Query: 240 E--KKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGF 413
           E  +K      + +  +++G +PH   E  +  +F++FG              + + +GF
Sbjct: 99  EGWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGF 158

Query: 414 IEF 422
           I F
Sbjct: 159 ITF 161



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>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)|
           (PABP)
          Length = 634

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 22/82 (26%), Positives = 38/82 (46%)
 Frame = +3

Query: 177 GPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXX 356
           G K   GK F+P + +E+ + EK +        T +Y+ +    F ++ +  FF+ +G  
Sbjct: 157 GKKVYVGK-FIPRKEREKELGEKAKL------FTNVYVKNFTEDFDDEKLKEFFEPYGKI 209

Query: 357 XXXXXXXXXXTGKSKHYGFIEF 422
                      GKSK +GF+ F
Sbjct: 210 TSYKVMSKED-GKSKGFGFVAF 230



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>SGN1_YEAST (P40561) RNA-binding protein SGN1|
          Length = 250

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 15/62 (24%), Positives = 28/62 (45%)
 Frame = +3

Query: 237 REKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFI 416
           +E+K A + E  +  +++G++      + +   F+  G            TG  K YG+I
Sbjct: 51  KEEKHAHQLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYI 110

Query: 417 EF 422
           EF
Sbjct: 111 EF 112



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>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1|
          Length = 346

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +3

Query: 258 EPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422
           EPEN   + ++G +     +D M  F+ QFG            T +S+ +GF+ F
Sbjct: 18  EPENLRKI-FVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTF 71



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>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1)
          Length = 407

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 24/123 (19%)
 Frame = +3

Query: 126 LRDKKRNQRR---------------VLSRRSAGPKTGDGKDFLP-------LEGKEQRIR 239
           ++DK  NQ R               VL+ R   P T DG++  P       ++ +  R +
Sbjct: 42  MKDKTTNQSRGFGFVKFKDPNCVGTVLASR---PHTLDGRNIDPKPCTPRGMQPERTRPK 98

Query: 240 E--KKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGF 413
           E  +K      + +  +++G +PH   E  +  +F++FG              + + +GF
Sbjct: 99  EGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGF 158

Query: 414 IEF 422
           I F
Sbjct: 159 ITF 161



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>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)|
          Length = 633

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 276 TVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422
           T +++G +P   YED +   F++ G            +G+++ Y FI F
Sbjct: 165 TEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITF 213



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>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2|
          Length = 326

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 282 LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFI 416
           +++G +P+   E  + C F Q+G            TGKSK + F+
Sbjct: 38  IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFL 82



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>GAR2_SCHPO (P41891) Protein gar2|
          Length = 500

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 15/102 (14%)
 Frame = +3

Query: 162 SRRSAGPKTGDGKDFLPLEGKEQRIREKKQAEEP---------------ENTATVLYIGH 296
           S   +  ++GD       E +     EKK+  EP                N    +++G 
Sbjct: 210 SSSDSSSESGDSDSSSDSESESSSEDEKKRKAEPASEERPAKITKPSQDSNETCTVFVGR 269

Query: 297 VPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422
           +     +  +   F+++G            +G+SK YG+++F
Sbjct: 270 LSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDF 311



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>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage|
           factor IB) (CFIB)
          Length = 534

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 14/71 (19%), Positives = 34/71 (47%)
 Frame = +3

Query: 210 PLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXT 389
           P + +  + +E++   +    +  ++IG +     ED++  +F ++G            T
Sbjct: 137 PPQQQVTQTKEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPAT 196

Query: 390 GKSKHYGFIEF 422
           G+S+ +GF+ F
Sbjct: 197 GRSRGFGFLSF 207



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>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2|
          Length = 322

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 282 LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFI 416
           +++G +P+   E  + C F Q+G            TGKSK + F+
Sbjct: 38  IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFL 82



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>PAX3_MOUSE (P24610) Paired box protein Pax-3|
          Length = 479

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = +3

Query: 156 VLSRRSAGPKTGDGKDF-----LPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYED 320
           +LS R++ P++ +G D      LPL+ K++R R    AE+ E         H P  +  +
Sbjct: 191 ILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTRE 250

Query: 321 HMS 329
            ++
Sbjct: 251 ELA 253



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>PAX3_HUMAN (P23760) Paired box protein Pax-3 (HUP2)|
          Length = 479

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = +3

Query: 156 VLSRRSAGPKTGDGKDF-----LPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYED 320
           +LS R++ P++ +G D      LPL+ K++R R    AE+ E         H P  +  +
Sbjct: 191 ILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTRE 250

Query: 321 HMS 329
            ++
Sbjct: 251 ELA 253



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>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Liver regeneration-related
           protein LRRG077)
          Length = 533

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = +3

Query: 267 NTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422
           +  T +++G +P   +ED +   F++ G            TG ++ Y F+ F
Sbjct: 69  SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTF 120



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>HORN_MOUSE (Q8VHD8) Hornerin|
          Length = 2496

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 173 GRPQNRRRQGFPAAGGERAEDPGEEASRGAGE 268
           GRP +R+  GFP  G E+ +     +++G+GE
Sbjct: 192 GRPSSRKASGFPQPGSEQGQS-SSSSTKGSGE 222



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>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Glycine-and tyrosine-rich
           RNA-binding protein) (GRY-RBP) (NS1-associated protein
           1) (pp68)
          Length = 623

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = +3

Query: 267 NTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422
           +  T +++G +P   +ED +   F++ G            TG ++ Y F+ F
Sbjct: 159 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTF 210



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>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Glycine-and tyrosine-rich
           RNA-binding protein) (GRY-RBP) (NS1-associated protein
           1)
          Length = 623

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = +3

Query: 267 NTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422
           +  T +++G +P   +ED +   F++ G            TG ++ Y F+ F
Sbjct: 159 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTF 210



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>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)|
           (hnRNP 48) (HRP48.1)
          Length = 421

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 18/82 (21%), Positives = 35/82 (42%)
 Frame = +3

Query: 177 GPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXX 356
           GP T DG+   P     + +++ K+    +     +++G +P    E  +  FF ++G  
Sbjct: 68  GPHTLDGRTIDPKPCNPRTLQKPKKGGGYK-----VFLGGLPSNVTETDLRTFFNRYGKV 122

Query: 357 XXXXXXXXXXTGKSKHYGFIEF 422
                       KS+ +GF+ F
Sbjct: 123 TEVVIMYDQEKKKSRGFGFLSF 144



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>RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa homolog|
          Length = 300

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 282 LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422
           ++IG +P+   E  +  +F +FG            T KSK Y FI F
Sbjct: 109 IFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVF 155



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>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast|
           precursor (PSRP-2)
          Length = 260

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 10/45 (22%), Positives = 21/45 (46%)
 Frame = +3

Query: 282 LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFI 416
           LY+G++P     D +    ++ G            +G+S+ +GF+
Sbjct: 86  LYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFV 130



 Score = 28.9 bits (63), Expect = 5.1
 Identities = 18/71 (25%), Positives = 31/71 (43%)
 Frame = +3

Query: 210 PLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXT 389
           PLEG +    + + ++  E+   V YIG++      + +  FF + G            T
Sbjct: 163 PLEGMDIATTQAEDSQFVESPYKV-YIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGT 221

Query: 390 GKSKHYGFIEF 422
            KS  +GF+ F
Sbjct: 222 SKSNGFGFVSF 232



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>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15|
          Length = 296

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +3

Query: 279 VLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422
           V+Y+G +P+   E+ +       G            TG+SK Y FIEF
Sbjct: 19  VVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEF 66



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>RFCL_PYRFU (Q9UWR2) Replication factor C large subunit (RFC large subunit)|
           (Clamp loader large subunit) (PfuRFC large subunit)
          Length = 479

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 12/50 (24%), Positives = 30/50 (60%)
 Frame = +3

Query: 117 EMGLRDKKRNQRRVLSRRSAGPKTGDGKDFLPLEGKEQRIREKKQAEEPE 266
           E+G+R++++ +  +        KT + K+ +  + +E++  EKK+ E+P+
Sbjct: 417 ELGIREEEKPKVEIEEEEEEEEKTEEEKEEIEEKPEEEKEEEKKEKEKPK 466



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>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1|
          Length = 841

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = +3

Query: 240 EKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIE 419
           E++ A++ E T   L+I ++ +   E+     F Q+G            TGKSK + +++
Sbjct: 299 EEQIAQKIEETGR-LFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQ 357

Query: 420 F 422
           F
Sbjct: 358 F 358



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>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)|
           (APOBEC-1-binding protein 1) (ABBP-1)
          Length = 331

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 17/71 (23%), Positives = 31/71 (43%)
 Frame = +3

Query: 210 PLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXT 389
           P  G     R++  A + E  A  +++G +     +  +  +F +FG            T
Sbjct: 46  PRAGIRTAPRDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNT 105

Query: 390 GKSKHYGFIEF 422
           G+S+ +GFI F
Sbjct: 106 GRSRGFGFILF 116



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>HUTU_RHIME (Q92V80) Urocanate hydratase (EC 4.2.1.49) (Urocanase)|
           (Imidazolonepropionate hydrolase)
          Length = 557

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 407 IMLGLSCLAVPCNPDSFN 354
           +M G  CLAV CNPDS +
Sbjct: 186 VMAGACCLAVECNPDSID 203



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>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2|
           (hnRNP A3(B))
          Length = 385

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 19/84 (22%), Positives = 33/84 (39%)
 Frame = +3

Query: 171 SAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFG 350
           SA P   DG+    +E K    RE         T   +++G +     E H+  +F+ +G
Sbjct: 86  SARPHKVDGR---VVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYFEGYG 142

Query: 351 XXXXXXXXXXXXTGKSKHYGFIEF 422
                       +GK + + F+ F
Sbjct: 143 KIETIEVMEDRQSGKKRGFAFVTF 166



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>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)|
           (RNA-binding protein BRUNOL-2) (Deadenylation factor
           CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein
           F41)
          Length = 486

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = +3

Query: 249 QAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422
           Q E PE     L+I H+P  F +  +   F  FG            T  SK +GF+ +
Sbjct: 394 QKEGPEGAN--LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSY 449



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>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)|
           (RNA-binding protein BRUNOL-2) (Deadenylation factor
           CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding
           protein) (EDEN-BP)
          Length = 486

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = +3

Query: 249 QAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422
           Q E PE     L+I H+P  F +  +   F  FG            T  SK +GF+ +
Sbjct: 394 QKEGPEGAN--LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSY 449



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>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)|
          Length = 386

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = +3

Query: 282 LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422
           +++G +      + +   F  FG            TGKSK YGF+ F
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 154



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>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)|
           (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15
           (p15-TIA-1)]
          Length = 386

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = +3

Query: 282 LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422
           +++G +      + +   F  FG            TGKSK YGF+ F
Sbjct: 108 VFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 154



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>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)|
           (CArG-binding factor-A) (CBF-A)
          Length = 285

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 25/112 (22%), Positives = 44/112 (39%)
 Frame = +3

Query: 87  GATQRFD*ACEMGLRDKKRNQRRVLSRRSAGPKTGDGKDFLPLEGKEQRIREKKQAEEPE 266
           GAT+    A   G    + +        SAG  +G G    P   +     ++  A + E
Sbjct: 14  GATENGHEAAPEGEAPVEPSAAAAAPAASAG--SGGGTTTAPSGNQNGAEGDQINASKNE 71

Query: 267 NTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422
             A  +++G +     +  +  +F +FG            TG+S+ +GFI F
Sbjct: 72  EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF 123



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>NISP_LACLA (Q07596) Nisin leader peptide-processing serine protease nisP|
           precursor (EC 3.4.21.-)
          Length = 682

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +3

Query: 141 RNQRRVLSRRSAG--PKTGDGKDFLPLEG 221
           RN R  +S RS    P TGDG+DFLP  G
Sbjct: 638 RNSRGAVSVRSQEILPVTGDGEDFLPALG 666



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>MYT1L_HUMAN (Q9UL68) Myelin transcription factor 1-like protein (MyT1L protein)|
           (MyT1-L)
          Length = 1186

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
 Frame = +3

Query: 111 ACEMGLRDKKRNQRRVLSRRSAG----PKTGDGKDFLPLEGKEQRIREKKQAEEPENTAT 278
           A E G RD  R+      R+  G    PK+ D     P  GK+    EKK+++ P  T  
Sbjct: 453 AMEAGRRDNMRSYEDQSPRQLPGEDRKPKSSDSHVKKPYYGKDPSRTEKKESKCP--TPG 510

Query: 279 VLYIGHVPHGFYEDHMS 329
               GHV  G Y  H S
Sbjct: 511 CDGTGHVT-GLYPHHRS 526



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>RAVR2_HUMAN (Q9HCJ3) Protein raver-2|
          Length = 691

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = +3

Query: 237 REKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFI 416
           R K    + + T  +L I +VP  F  +      + +G            TG SK YGF+
Sbjct: 129 RGKDLIVQLQPTDALLCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFV 188

Query: 417 EF 422
           E+
Sbjct: 189 EY 190



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>GP152_MOUSE (Q8BXS7) Probable G-protein coupled receptor 152|
          Length = 511

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 176 RPQNRRRQGFPAAGGERAEDPGEEASRG 259
           +PQ+      PA G E A +PGEE S G
Sbjct: 446 QPQSNTETPIPAFGDESASNPGEENSSG 473



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>SYP_CHLTR (P36431) Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA|
           ligase) (ProRS)
          Length = 581

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = -1

Query: 211 GRKSLPSPVLGPAERRESTRLWFLFLSLSPI----SHAQSNLCVAPEEEEV 71
           G + +  P+L PAE  E T  W  FLS   +          +C+AP  EEV
Sbjct: 65  GGQEVCLPLLQPAELWEKTGRWKAFLSEKLLYVLKDRENKAMCLAPTHEEV 115



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>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor|
           65 kDa subunit) (U2 snRNP auxiliary factor large
           subunit)
          Length = 475

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +3

Query: 267 NTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422
           ++A  L+IG +P+   +D +      FG            TG SK Y F E+
Sbjct: 256 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEY 307



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>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor|
           65 kDa subunit) (U2 snRNP auxiliary factor large
           subunit) (hU2AF(65))
          Length = 475

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +3

Query: 267 NTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422
           ++A  L+IG +P+   +D +      FG            TG SK Y F E+
Sbjct: 256 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEY 307



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>HUTU_RHILO (Q983H8) Urocanate hydratase (EC 4.2.1.49) (Urocanase)|
           (Imidazolonepropionate hydrolase)
          Length = 557

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 407 IMLGLSCLAVPCNPDSFN 354
           +M G  CLA+ CNPDS +
Sbjct: 187 VMAGACCLAIECNPDSID 204



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>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)|
            (LC collagen)
          Length = 2944

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 8/55 (14%)
 Frame = +2

Query: 122  GAEGQXXXXXXXXXXXXGRPQNRRRQGFPAAGGERAE--------DPGEEASRGA 262
            GA+G+            G P  +  +G P   GE+ E        DPGE+  +GA
Sbjct: 2307 GAKGEKGAPGGLAGDLVGEPGAKGDRGLPGPRGEKGEAGRAGEPGDPGEDGQKGA 2361



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>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)|
          Length = 367

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +3

Query: 282 LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422
           LY+  +P    +  M   F Q+G            TG S+  GFI F
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRF 173



 Score = 28.1 bits (61), Expect = 8.8
 Identities = 12/53 (22%), Positives = 22/53 (41%)
 Frame = +3

Query: 264 ENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422
           +++ T L + ++P    +D     F   G            TG+S  YGF+ +
Sbjct: 35  DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNY 87



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>TOP2A_PIG (O46374) DNA topoisomerase 2-alpha (EC 5.99.1.3) (DNA topoisomerase|
            II, alpha isozyme)
          Length = 1533

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = +3

Query: 117  EMGLRDKKRNQRRVLSRRSAGPKTGDGKDFLPLEGKEQRIREKKQAEEP 263
            EM    +K+ ++++ S  + G    DG +   +EG +QR+ EKKQ  EP
Sbjct: 1226 EMKAEAEKKIKKKIKSENTEGSPQEDGME---VEGLKQRL-EKKQKREP 1270



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>GVPL_HALME (Q02237) Protein gvpL|
          Length = 322

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 183 KTGDGKDFLPLEGKEQRIREKKQAEEPENTATV 281
           + G GK FL  +  ++R+RE+KQ    E T T+
Sbjct: 212 EAGSGKSFLLKKQYDKRLRERKQNRRAELTTTL 244



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>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I|
          Length = 297

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 14/56 (25%), Positives = 22/56 (39%)
 Frame = +3

Query: 255 EEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422
           E  EN    L++  +     ED +   F +FG            T  S+ +GF+ F
Sbjct: 94  EGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSF 149



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>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2|
          Length = 359

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/53 (22%), Positives = 23/53 (43%)
 Frame = +3

Query: 264 ENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422
           E++ T L + ++P    ++ +   F   G            TG+S  YGF+ +
Sbjct: 35  EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 87



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>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like|
           neuronal protein 1) (Nervous system-specific RNA-binding
           protein Hel-N1)
          Length = 359

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/53 (22%), Positives = 23/53 (43%)
 Frame = +3

Query: 264 ENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422
           E++ T L + ++P    ++ +   F   G            TG+S  YGF+ +
Sbjct: 35  EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 87



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>SNX11_HUMAN (Q9Y5W9) Sorting nexin-11|
          Length = 270

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 229 CSFPSSGRKSLPSPVLGPAERRESTRLW 146
           C  P SGR+S PSP   P+E ++   +W
Sbjct: 182 CFLPRSGRRSSPSP--PPSEEKDHLEVW 207



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>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)|
          Length = 392

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = +3

Query: 282 LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422
           +++G +      + +   F  FG            TGKSK YGF+ F
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSF 162



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>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)|
          Length = 375

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = +3

Query: 282 LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422
           +++G +      + +   F  FG            TGKSK YGF+ F
Sbjct: 99  VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSF 145



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>PLCB2_HUMAN (Q00722) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase|
            beta 2 (EC 3.1.4.11) (Phosphoinositide phospholipase C)
            (Phospholipase C-beta-2) (PLC-beta-2)
          Length = 1181

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +3

Query: 111  ACEMGLRDKKRNQRRVLSRRSAGPKTGDGKDFLPLEGKEQRIREKKQAEEPE 266
            AC++G     R +R +    SAG   G+G      EG + R+RE K   E E
Sbjct: 940  ACKLGPGKGSRKKRSLPREESAGAAPGEGP-----EGVDGRVRELKDRLELE 986



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>YPC4_CAEEL (Q11181) Hypothetical protein C05D10.4|
          Length = 597

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -1

Query: 274 AVFSGSSACFFSRILCSFPSSGRKSLPSPVLGPAERR 164
           AV   SSACF S    SFPS G +    P+ G +  R
Sbjct: 79  AVNRSSSACFHSPHRPSFPSRGLQKYDYPICGVSPSR 115



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>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like|
           neuronal protein 1) (Nervous system-specific RNA-binding
           protein Mel-N1)
          Length = 360

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/53 (22%), Positives = 23/53 (43%)
 Frame = +3

Query: 264 ENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422
           E++ T L + ++P    ++ +   F   G            TG+S  YGF+ +
Sbjct: 35  EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 87



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>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic|
           cerebellar degeneration-associated antigen)
           (Paraneoplastic limbic encephalitis antigen 21)
          Length = 367

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +3

Query: 282 LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422
           LY+  +P    +  M   F Q+G            TG S+  GFI F
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 173



 Score = 28.1 bits (61), Expect = 8.8
 Identities = 12/53 (22%), Positives = 22/53 (41%)
 Frame = +3

Query: 264 ENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422
           +++ T L + ++P    +D     F   G            TG+S  YGF+ +
Sbjct: 35  DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNY 87



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>SNX11_MOUSE (Q91WL6) Sorting nexin-11|
          Length = 271

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 229 CSFPSSGRKSLPSPVLGPAERRESTRLW 146
           C  P SGR+S PSP L  +E +E    W
Sbjct: 182 CFLPRSGRRSSPSPPL--SEEKEQLETW 207



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>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)|
          Length = 291

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +3

Query: 213 LEGKEQRIREKKQAEEPENTATV-LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXT 389
           L G +Q   + + AE+P  +  + L++G++P       ++  F++ G            T
Sbjct: 65  LSGFDQLEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLT 124

Query: 390 GKSKHYGFI 416
           G+S+ +GF+
Sbjct: 125 GRSRGFGFV 133



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>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)|
          Length = 273

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 14/84 (16%)
 Frame = +3

Query: 213 LEGKEQRIREKKQAEEPENTA--------------TVLYIGHVPHGFYEDHMSCFFQQFG 350
           L+G+  R+      E+ EN++                +Y+G++  G  +D +   F + G
Sbjct: 153 LDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQG 212

Query: 351 XXXXXXXXXXXXTGKSKHYGFIEF 422
                       +G+S+ +GF+ +
Sbjct: 213 KVVDAKVVYDRDSGRSRGFGFVTY 236



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>PPIL4_SCHPO (Q9UUE4) Peptidyl-prolyl cis-trans isomerase cyp6 (EC 5.2.1.8)|
           (PPIase cyp6) (Rotamase cyp8)
          Length = 432

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 17/86 (19%)
 Frame = +3

Query: 216 EGKEQRIREKKQAEEPENTATVLYIGHVPHGFY-----------------EDHMSCFFQQ 344
           E  E +++ +K+ E      T+  IG +P                     ++ +   F +
Sbjct: 207 ETSEDKLQREKEMEAEAEAVTLEMIGDLPFAHVAPPENVLFVCKLNPVTQDEDLELIFSR 266

Query: 345 FGXXXXXXXXXXXXTGKSKHYGFIEF 422
           FG            TG S  Y FIEF
Sbjct: 267 FGKIISCQVIRDKETGDSLQYAFIEF 292



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>IE68_SHV21 (Q01042) Immediate-early protein|
          Length = 407

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +3

Query: 135 KKRNQRRVLSRRSAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTA 275
           ++R +R    R   G + G+G++    E  E++  E+++AEE E  A
Sbjct: 72  EERERRGEEEREGEGGEEGEGREEAEEEEAEEKEAEEEEAEEAEEEA 118



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>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA|
          Length = 101

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 10/46 (21%), Positives = 23/46 (50%)
 Frame = +3

Query: 282 LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIE 419
           +Y+G++ +   E  ++  F ++G            TG+ + +GF+E
Sbjct: 3   IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVE 48


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,728,022
Number of Sequences: 219361
Number of extensions: 706297
Number of successful extensions: 2804
Number of sequences better than 10.0: 106
Number of HSP's better than 10.0 without gapping: 2676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2799
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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