Clone Name | bastl43a12 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_482379.1| Oryza sativa (japonica cultivar-group), mRNA Length = 977 Score = 190 bits (96), Expect = 3e-45 Identities = 153/172 (88%) Strand = Plus / Plus Query: 253 ccgaggagccggagaacacggccaccgtcctctacatcggccacgtcccccatggtttct 312 |||||||||||||||||||| ||||||||||||||||||| ||| |||||||||| |||| Sbjct: 263 ccgaggagccggagaacacgtccaccgtcctctacatcgggcacatcccccatgggttct 322 Query: 313 atgaggaccatatgtcatgtttctttcagcagtttggggctgttaaaagagtcagggttg 372 ||||||| || ||| | ||||||||||||| ||||| |||||||||| | ||| ||| Sbjct: 323 atgaggaacagatgcaaggtttctttcagcaatttggaactgttaaaaggttgaggattg 382 Query: 373 cacggaaccgcaagacaggaaagtccaagcattatgggttcatcgagtttga 424 | || |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 383 cccgaaaccgcaagacaggaaagtccaagcattatgggttcattgagtttga 434 Score = 89.7 bits (45), Expect = 7e-15 Identities = 87/101 (86%) Strand = Plus / Plus Query: 117 gagatggggctgagggacaagaagaggaaccagaggcgcgtgctctcgcgccgctcggcc 176 ||||||||||||||||| |||||| |||||||||||||||||||| | || ||||||||| Sbjct: 124 gagatggggctgagggagaagaagcggaaccagaggcgcgtgctcgcccggcgctcggcc 183 Query: 177 ggccccaaaaccggcgacggcaaggatttcctgccgctgga 217 | ||| |||| || |||||||| |||||||||||||| Sbjct: 184 gctccccgctccggggagggcaaggacttcctgccgctgga 224
>ref|XM_507581.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0007M04.13 mRNA Length = 983 Score = 190 bits (96), Expect = 3e-45 Identities = 153/172 (88%) Strand = Plus / Plus Query: 253 ccgaggagccggagaacacggccaccgtcctctacatcggccacgtcccccatggtttct 312 |||||||||||||||||||| ||||||||||||||||||| ||| |||||||||| |||| Sbjct: 269 ccgaggagccggagaacacgtccaccgtcctctacatcgggcacatcccccatgggttct 328 Query: 313 atgaggaccatatgtcatgtttctttcagcagtttggggctgttaaaagagtcagggttg 372 ||||||| || ||| | ||||||||||||| ||||| |||||||||| | ||| ||| Sbjct: 329 atgaggaacagatgcaaggtttctttcagcaatttggaactgttaaaaggttgaggattg 388 Query: 373 cacggaaccgcaagacaggaaagtccaagcattatgggttcatcgagtttga 424 | || |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 389 cccgaaaccgcaagacaggaaagtccaagcattatgggttcattgagtttga 440 Score = 89.7 bits (45), Expect = 7e-15 Identities = 87/101 (86%) Strand = Plus / Plus Query: 117 gagatggggctgagggacaagaagaggaaccagaggcgcgtgctctcgcgccgctcggcc 176 ||||||||||||||||| |||||| |||||||||||||||||||| | || ||||||||| Sbjct: 130 gagatggggctgagggagaagaagcggaaccagaggcgcgtgctcgcccggcgctcggcc 189 Query: 177 ggccccaaaaccggcgacggcaaggatttcctgccgctgga 217 | ||| |||| || |||||||| |||||||||||||| Sbjct: 190 gctccccgctccggggagggcaaggacttcctgccgctgga 230
>ref|XM_507230.2| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0007M04.13 mRNA Length = 1096 Score = 190 bits (96), Expect = 3e-45 Identities = 153/172 (88%) Strand = Plus / Plus Query: 253 ccgaggagccggagaacacggccaccgtcctctacatcggccacgtcccccatggtttct 312 |||||||||||||||||||| ||||||||||||||||||| ||| |||||||||| |||| Sbjct: 265 ccgaggagccggagaacacgtccaccgtcctctacatcgggcacatcccccatgggttct 324 Query: 313 atgaggaccatatgtcatgtttctttcagcagtttggggctgttaaaagagtcagggttg 372 ||||||| || ||| | ||||||||||||| ||||| |||||||||| | ||| ||| Sbjct: 325 atgaggaacagatgcaaggtttctttcagcaatttggaactgttaaaaggttgaggattg 384 Query: 373 cacggaaccgcaagacaggaaagtccaagcattatgggttcatcgagtttga 424 | || |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 385 cccgaaaccgcaagacaggaaagtccaagcattatgggttcattgagtttga 436 Score = 89.7 bits (45), Expect = 7e-15 Identities = 87/101 (86%) Strand = Plus / Plus Query: 117 gagatggggctgagggacaagaagaggaaccagaggcgcgtgctctcgcgccgctcggcc 176 ||||||||||||||||| |||||| |||||||||||||||||||| | || ||||||||| Sbjct: 126 gagatggggctgagggagaagaagcggaaccagaggcgcgtgctcgcccggcgctcggcc 185 Query: 177 ggccccaaaaccggcgacggcaaggatttcctgccgctgga 217 | ||| |||| || |||||||| |||||||||||||| Sbjct: 186 gctccccgctccggggagggcaaggacttcctgccgctgga 226
>emb|AJ575234.1|OSA575234 Oryza sativa (japonica cultivar-group) partial mRNA for TA8 protein Length = 590 Score = 190 bits (96), Expect = 3e-45 Identities = 153/172 (88%) Strand = Plus / Plus Query: 253 ccgaggagccggagaacacggccaccgtcctctacatcggccacgtcccccatggtttct 312 |||||||||||||||||||| ||||||||||||||||||| ||| |||||||||| |||| Sbjct: 137 ccgaggagccggagaacacgtccaccgtcctctacatcgggcacatcccccatgggttct 196 Query: 313 atgaggaccatatgtcatgtttctttcagcagtttggggctgttaaaagagtcagggttg 372 ||||||| || ||| | ||||||||||||| ||||| |||||||||| | ||| ||| Sbjct: 197 atgaggaacagatgcaaggtttctttcagcaatttggaactgttaaaaggttgaggattg 256 Query: 373 cacggaaccgcaagacaggaaagtccaagcattatgggttcatcgagtttga 424 | || |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 257 cccgaaaccgcaagacaggaaagtccaagcattatgggttcattgagtttga 308 Score = 83.8 bits (42), Expect = 4e-13 Identities = 84/98 (85%) Strand = Plus / Plus Query: 120 atggggctgagggacaagaagaggaaccagaggcgcgtgctctcgcgccgctcggccggc 179 |||||||||||||| |||||| |||||||||||||||||||| | || |||||||||| Sbjct: 1 atggggctgagggagaagaagcggaaccagaggcgcgtgctcgcccggcgctcggccgct 60 Query: 180 cccaaaaccggcgacggcaaggatttcctgccgctgga 217 ||| |||| || |||||||| |||||||||||||| Sbjct: 61 ccccgctccggggagggcaaggacttcctgccgctgga 98
>dbj|AK104578.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-B02, full insert sequence Length = 977 Score = 190 bits (96), Expect = 3e-45 Identities = 153/172 (88%) Strand = Plus / Plus Query: 253 ccgaggagccggagaacacggccaccgtcctctacatcggccacgtcccccatggtttct 312 |||||||||||||||||||| ||||||||||||||||||| ||| |||||||||| |||| Sbjct: 263 ccgaggagccggagaacacgtccaccgtcctctacatcgggcacatcccccatgggttct 322 Query: 313 atgaggaccatatgtcatgtttctttcagcagtttggggctgttaaaagagtcagggttg 372 ||||||| || ||| | ||||||||||||| ||||| |||||||||| | ||| ||| Sbjct: 323 atgaggaacagatgcaaggtttctttcagcaatttggaactgttaaaaggttgaggattg 382 Query: 373 cacggaaccgcaagacaggaaagtccaagcattatgggttcatcgagtttga 424 | || |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 383 cccgaaaccgcaagacaggaaagtccaagcattatgggttcattgagtttga 434 Score = 89.7 bits (45), Expect = 7e-15 Identities = 87/101 (86%) Strand = Plus / Plus Query: 117 gagatggggctgagggacaagaagaggaaccagaggcgcgtgctctcgcgccgctcggcc 176 ||||||||||||||||| |||||| |||||||||||||||||||| | || ||||||||| Sbjct: 124 gagatggggctgagggagaagaagcggaaccagaggcgcgtgctcgcccggcgctcggcc 183 Query: 177 ggccccaaaaccggcgacggcaaggatttcctgccgctgga 217 | ||| |||| || |||||||| |||||||||||||| Sbjct: 184 gctccccgctccggggagggcaaggacttcctgccgctgga 224
>dbj|AK099367.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033051M06, full insert sequence Length = 983 Score = 190 bits (96), Expect = 3e-45 Identities = 153/172 (88%) Strand = Plus / Plus Query: 253 ccgaggagccggagaacacggccaccgtcctctacatcggccacgtcccccatggtttct 312 |||||||||||||||||||| ||||||||||||||||||| ||| |||||||||| |||| Sbjct: 269 ccgaggagccggagaacacgtccaccgtcctctacatcgggcacatcccccatgggttct 328 Query: 313 atgaggaccatatgtcatgtttctttcagcagtttggggctgttaaaagagtcagggttg 372 ||||||| || ||| | ||||||||||||| ||||| |||||||||| | ||| ||| Sbjct: 329 atgaggaacagatgcaaggtttctttcagcaatttggaactgttaaaaggttgaggattg 388 Query: 373 cacggaaccgcaagacaggaaagtccaagcattatgggttcatcgagtttga 424 | || |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 389 cccgaaaccgcaagacaggaaagtccaagcattatgggttcattgagtttga 440 Score = 89.7 bits (45), Expect = 7e-15 Identities = 87/101 (86%) Strand = Plus / Plus Query: 117 gagatggggctgagggacaagaagaggaaccagaggcgcgtgctctcgcgccgctcggcc 176 ||||||||||||||||| |||||| |||||||||||||||||||| | || ||||||||| Sbjct: 130 gagatggggctgagggagaagaagcggaaccagaggcgcgtgctcgcccggcgctcggcc 189 Query: 177 ggccccaaaaccggcgacggcaaggatttcctgccgctgga 217 | ||| |||| || |||||||| |||||||||||||| Sbjct: 190 gctccccgctccggggagggcaaggacttcctgccgctgga 230
>dbj|AK059631.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-A04, full insert sequence Length = 1096 Score = 190 bits (96), Expect = 3e-45 Identities = 153/172 (88%) Strand = Plus / Plus Query: 253 ccgaggagccggagaacacggccaccgtcctctacatcggccacgtcccccatggtttct 312 |||||||||||||||||||| ||||||||||||||||||| ||| |||||||||| |||| Sbjct: 265 ccgaggagccggagaacacgtccaccgtcctctacatcgggcacatcccccatgggttct 324 Query: 313 atgaggaccatatgtcatgtttctttcagcagtttggggctgttaaaagagtcagggttg 372 ||||||| || ||| | ||||||||||||| ||||| |||||||||| | ||| ||| Sbjct: 325 atgaggaacagatgcaaggtttctttcagcaatttggaactgttaaaaggttgaggattg 384 Query: 373 cacggaaccgcaagacaggaaagtccaagcattatgggttcatcgagtttga 424 | || |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 385 cccgaaaccgcaagacaggaaagtccaagcattatgggttcattgagtttga 436 Score = 89.7 bits (45), Expect = 7e-15 Identities = 87/101 (86%) Strand = Plus / Plus Query: 117 gagatggggctgagggacaagaagaggaaccagaggcgcgtgctctcgcgccgctcggcc 176 ||||||||||||||||| |||||| |||||||||||||||||||| | || ||||||||| Sbjct: 126 gagatggggctgagggagaagaagcggaaccagaggcgcgtgctcgcccggcgctcggcc 185 Query: 177 ggccccaaaaccggcgacggcaaggatttcctgccgctgga 217 | ||| |||| || |||||||| |||||||||||||| Sbjct: 186 gctccccgctccggggagggcaaggacttcctgccgctgga 226
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 101 bits (51), Expect = 2e-18 Identities = 63/67 (94%) Strand = Plus / Minus Query: 253 ccgaggagccggagaacacggccaccgtcctctacatcggccacgtcccccatggtttct 312 |||||||||||||||||||| ||||||||||||||||||| ||| |||||||||| |||| Sbjct: 19718268 ccgaggagccggagaacacgtccaccgtcctctacatcgggcacatcccccatgggttct 19718209 Query: 313 atgagga 319 ||||||| Sbjct: 19718208 atgagga 19718202 Score = 81.8 bits (41), Expect = 2e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 117 gagatggggctgagggacaagaagaggaaccagaggcgcgtgctctcgcgccgctcggcc 176 ||||||||||||||||| |||||| |||||||||||||||||||| | || ||||||||| Sbjct: 19718509 gagatggggctgagggagaagaagcggaaccagaggcgcgtgctcgcccggcgctcggcc 19718450 Query: 177 g 177 | Sbjct: 19718449 g 19718449 Score = 71.9 bits (36), Expect = 2e-09 Identities = 39/40 (97%) Strand = Plus / Minus Query: 385 agacaggaaagtccaagcattatgggttcatcgagtttga 424 ||||||||||||||||||||||||||||||| |||||||| Sbjct: 19716321 agacaggaaagtccaagcattatgggttcattgagtttga 19716282 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 51 tcctccgcgccgcctcgccgga 72 |||||||||||||||||||||| Sbjct: 19514993 tcctccgcgccgcctcgccgga 19515014 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 52 cctccgcgccgcctcgccgga 72 ||||||||||||||||||||| Sbjct: 15280426 cctccgcgccgcctcgccgga 15280406 Score = 40.1 bits (20), Expect = 5.7 Identities = 47/56 (83%) Strand = Plus / Minus Query: 331 gtttctttcagcagtttggggctgttaaaagagtcagggttgcacggaaccgcaag 386 ||||||||||||| ||||| |||||||||| | ||| |||| || ||||||||| Sbjct: 19716446 gtttctttcagcaatttggaactgttaaaaggttgaggattgcccgaaaccgcaag 19716391
>dbj|AP005158.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0007M04 Length = 176293 Score = 101 bits (51), Expect = 2e-18 Identities = 63/67 (94%) Strand = Plus / Minus Query: 253 ccgaggagccggagaacacggccaccgtcctctacatcggccacgtcccccatggtttct 312 |||||||||||||||||||| ||||||||||||||||||| ||| |||||||||| |||| Sbjct: 47219 ccgaggagccggagaacacgtccaccgtcctctacatcgggcacatcccccatgggttct 47160 Query: 313 atgagga 319 ||||||| Sbjct: 47159 atgagga 47153 Score = 81.8 bits (41), Expect = 2e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 117 gagatggggctgagggacaagaagaggaaccagaggcgcgtgctctcgcgccgctcggcc 176 ||||||||||||||||| |||||| |||||||||||||||||||| | || ||||||||| Sbjct: 47460 gagatggggctgagggagaagaagcggaaccagaggcgcgtgctcgcccggcgctcggcc 47401 Query: 177 g 177 | Sbjct: 47400 g 47400 Score = 71.9 bits (36), Expect = 2e-09 Identities = 39/40 (97%) Strand = Plus / Minus Query: 385 agacaggaaagtccaagcattatgggttcatcgagtttga 424 ||||||||||||||||||||||||||||||| |||||||| Sbjct: 45272 agacaggaaagtccaagcattatgggttcattgagtttga 45233 Score = 40.1 bits (20), Expect = 5.7 Identities = 47/56 (83%) Strand = Plus / Minus Query: 331 gtttctttcagcagtttggggctgttaaaagagtcagggttgcacggaaccgcaag 386 ||||||||||||| ||||| |||||||||| | ||| |||| || ||||||||| Sbjct: 45397 gtttctttcagcaatttggaactgttaaaaggttgaggattgcccgaaaccgcaag 45342
>gb|AY106169.1| Zea mays PCO082380 mRNA sequence Length = 1072 Score = 85.7 bits (43), Expect = 1e-13 Identities = 106/127 (83%) Strand = Plus / Plus Query: 298 tcccccatggtttctatgaggaccatatgtcatgtttctttcagcagtttggggctgtta 357 |||||||||||||||| |||||| | ||| | | |||||| |||||||||||| | ||| Sbjct: 339 tcccccatggtttctacgaggacgagatgaaagggttctttaagcagtttggggatatta 398 Query: 358 aaagagtcagggttgcacggaaccgcaagacaggaaagtccaagcattatgggttcatcg 417 | || | ||| | || || |||||||||||||||||||||||||| ||||| ||||| | Sbjct: 399 agaggcttaggatcgctcgtaaccgcaagacaggaaagtccaagcactatggattcattg 458 Query: 418 agtttga 424 ||||||| Sbjct: 459 agtttga 465 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 189 ggcgacggcaaggatttcctgccgctgga 217 ||||| ||||||||||||||||||||||| Sbjct: 227 ggcgagggcaaggatttcctgccgctgga 255 Score = 46.1 bits (23), Expect = 0.092 Identities = 47/55 (85%) Strand = Plus / Plus Query: 115 gcgagatggggctgagggacaagaagaggaaccagaggcgcgtgctctcgcgccg 169 ||||||||||| || | || |||||| ||||||||| ||| |||||| ||||||| Sbjct: 153 gcgagatggggatgcgagataagaagcggaaccagaagcgagtgctcgcgcgccg 207
>ref|NM_186307.1| Oryza sativa (japonica cultivar-group), mRNA Length = 477 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 43 ctccgccgtcctccgcgccgcc 64 |||||||||||||||||||||| Sbjct: 255 ctccgccgtcctccgcgccgcc 234
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 43 ctccgccgtcctccgcgccgcc 64 |||||||||||||||||||||| Sbjct: 2395000 ctccgccgtcctccgcgccgcc 2395021
>dbj|AP005473.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0077B15 Length = 139345 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 43 ctccgccgtcctccgcgccgcc 64 |||||||||||||||||||||| Sbjct: 98008 ctccgccgtcctccgcgccgcc 98029
>dbj|AK111715.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019D09, full insert sequence Length = 2163 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 51 tcctccgcgccgcctcgccgga 72 |||||||||||||||||||||| Sbjct: 128 tcctccgcgccgcctcgccgga 149
>dbj|AP004691.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0453D01 Length = 147461 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 51 tcctccgcgccgcctcgccgga 72 |||||||||||||||||||||| Sbjct: 109750 tcctccgcgccgcctcgccgga 109771
>ref|NM_103253.2| Arabidopsis thaliana transcription factor AT1G35560 mRNA, complete cds Length = 1410 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 67 gccggacctcctcctcctccg 87 ||||||||||||||||||||| Sbjct: 866 gccggacctcctcctcctccg 846
>ref|XM_481757.1| Oryza sativa (japonica cultivar-group), mRNA Length = 522 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 52 cctccgcgccgcctcgccgga 72 ||||||||||||||||||||| Sbjct: 307 cctccgcgccgcctcgccgga 287
>ref|XM_530716.1| PREDICTED: Pan troglodytes LOC461180 (LOC461180), mRNA Length = 1407 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 153 cgcgtgctctcgcgccgctcg 173 ||||||||||||||||||||| Sbjct: 382 cgcgtgctctcgcgccgctcg 402
>emb|AL158205.12| Human DNA sequence from clone RP11-177F4 on chromosome 9 Contains a CpG island, complete sequence Length = 68171 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 208 tgccgctggaggggaaagagc 228 ||||||||||||||||||||| Sbjct: 6825 tgccgctggaggggaaagagc 6805
>gb|AC098591.4| Homo sapiens BAC clone RP11-333E13 from 4, complete sequence Length = 179641 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 153 cgcgtgctctcgcgccgctcg 173 ||||||||||||||||||||| Sbjct: 27388 cgcgtgctctcgcgccgctcg 27368
>gb|BC041361.1| Homo sapiens SCC-112 protein, mRNA (cDNA clone IMAGE:5273075), complete cds Length = 2705 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 153 cgcgtgctctcgcgccgctcg 173 ||||||||||||||||||||| Sbjct: 49 cgcgtgctctcgcgccgctcg 69
>gb|AY081714.1| Arabidopsis thaliana At1g35560/F15O4_35 mRNA, complete cds Length = 1026 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 67 gccggacctcctcctcctccg 87 ||||||||||||||||||||| Sbjct: 755 gccggacctcctcctcctccg 735
>gb|AY056429.1| Arabidopsis thaliana At1g35560/F15O4_35 mRNA, complete cds Length = 1357 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 67 gccggacctcctcctcctccg 87 ||||||||||||||||||||| Sbjct: 813 gccggacctcctcctcctccg 793
>gb|AF530471.1| Antheraea mylitta Bmc1-like and Yamato-like retrotransposon sequence Length = 3186 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 ccgcgccgcctcgccggacct 75 ||||||||||||||||||||| Sbjct: 1398 ccgcgccgcctcgccggacct 1418
>gb|AC007887.9|AC007887 Genomic sequence for Arabidopsis thaliana BAC F15O4 from chromosome I, complete sequence Length = 158096 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 67 gccggacctcctcctcctccg 87 ||||||||||||||||||||| Sbjct: 103114 gccggacctcctcctcctccg 103094
>dbj|AP005491.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0062G05 Length = 152802 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 52 cctccgcgccgcctcgccgga 72 ||||||||||||||||||||| Sbjct: 66057 cctccgcgccgcctcgccgga 66037
>dbj|AP004574.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0702G08 Length = 144596 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 52 cctccgcgccgcctcgccgga 72 ||||||||||||||||||||| Sbjct: 128251 cctccgcgccgcctcgccgga 128231
>gb|AY749788.1| Mirawara sp. EP093 16S ribosomal RNA gene, partial sequence; mitochondrial Length = 490 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 117 gagatggggctgagggacaagaaga 141 |||||||||||||||||| |||||| Sbjct: 203 gagatggggctgagggacgagaaga 227
>gb|AC105966.11| Mus musculus chromosome 3, clone RP23-403H2, complete sequence Length = 201376 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 gacctcctcctcctccggag 90 |||||||||||||||||||| Sbjct: 145158 gacctcctcctcctccggag 145177
>ref|NM_117445.1| Arabidopsis thaliana lyase/ pectate lyase AT4G13710 mRNA, complete cds Length = 1963 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 ggagaagaagcaagccgagg 258 |||||||||||||||||||| Sbjct: 1697 ggagaagaagcaagccgagg 1678
>ref|NM_190924.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 621 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 ccgccgcccccttcctctgc 32 |||||||||||||||||||| Sbjct: 233 ccgccgcccccttcctctgc 214
>gb|AY440588.1| Armigeres subalbatus ASAP ID: 40461 putative: serine protease inhibitor mRNA sequence Length = 986 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 cgtgctctcgcgccgctcgg 174 |||||||||||||||||||| Sbjct: 10 cgtgctctcgcgccgctcgg 29
>gb|AF104455.1| Homo sapiens chromosome 7qtelo BAC F6, complete sequence Length = 71353 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 gctggaggggaaagagcaga 231 |||||||||||||||||||| Sbjct: 26017 gctggaggggaaagagcaga 26036
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 aaggatttcctgccgctgga 217 |||||||||||||||||||| Sbjct: 2359583 aaggatttcctgccgctgga 2359602
>ref|XM_456571.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0A05764g) partial mRNA Length = 771 Score = 40.1 bits (20), Expect = 5.7 Identities = 35/40 (87%) Strand = Plus / Plus Query: 384 aagacaggaaagtccaagcattatgggttcatcgagtttg 423 ||||| || ||||| ||||| |||||||||||||| |||| Sbjct: 439 aagactggtaagtcgaagcactatgggttcatcgaatttg 478
>ref|XM_595602.2| PREDICTED: Bos taurus similar to tenascin N (LOC517433), mRNA Length = 4651 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 cggagaacacggccaccgtc 281 |||||||||||||||||||| Sbjct: 2681 cggagaacacggccaccgtc 2700 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 cggagaacacggccaccgtc 281 |||||||||||||||||||| Sbjct: 1889 cggagaacacggccaccgtc 1908 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 cggagaacacggccaccgtc 281 |||||||||||||||||||| Sbjct: 1625 cggagaacacggccaccgtc 1644
>ref|NM_001006472.1| Gallus gallus CD151 molecule (Raph blood group) (CD151), mRNA Length = 3234 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 45 ccgccgtcctccgcgccgcctcgc 68 ||||||| |||||||||||||||| Sbjct: 102 ccgccgtgctccgcgccgcctcgc 79
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 ccgccgcccccttcctctgc 32 |||||||||||||||||||| Sbjct: 2674902 ccgccgcccccttcctctgc 2674921
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 187 ccggcgacggcaaggatttcctgc 210 |||||||||||||||| ||||||| Sbjct: 1220946 ccggcgacggcaaggagttcctgc 1220923
>gb|AC005084.2| Homo sapiens BAC clone CTA-298G8 from 7, complete sequence Length = 177901 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 ggaggggaaagagcagagga 234 |||||||||||||||||||| Sbjct: 71615 ggaggggaaagagcagagga 71634
>ref|XM_964384.1| PREDICTED: Tribolium castaneum similar to Signal transducer and activator of transcription 5B (LOC657965), mRNA Length = 2446 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 agaagaagcaagccgaggag 260 |||||||||||||||||||| Sbjct: 1902 agaagaagcaagccgaggag 1921
>ref|XM_774964.1| PREDICTED: Strongylocentrotus purpuratus similar to Glutathione S-transferase theta 1 (GST class-theta 1) (LOC574614), mRNA Length = 681 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 aggaaccagaggcgcgtgct 160 |||||||||||||||||||| Sbjct: 318 aggaaccagaggcgcgtgct 337
>emb|CR382133.1| Debaryomyces hansenii chromosome A of strain CBS767 of Debaryomyces hansenii Length = 1249565 Score = 40.1 bits (20), Expect = 5.7 Identities = 35/40 (87%) Strand = Plus / Plus Query: 384 aagacaggaaagtccaagcattatgggttcatcgagtttg 423 ||||| || ||||| ||||| |||||||||||||| |||| Sbjct: 466538 aagactggtaagtcgaagcactatgggttcatcgaatttg 466577
>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29 Length = 300800 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 187 ccggcgacggcaaggatttcctgc 210 |||||||||||||||| ||||||| Sbjct: 221492 ccggcgacggcaaggagttcctgc 221469
>emb|AL161537.2|ATCHRIV37 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 37 Length = 199667 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 ggagaagaagcaagccgagg 258 |||||||||||||||||||| Sbjct: 58286 ggagaagaagcaagccgagg 58267
>emb|AL035528.2|ATF18A5 Arabidopsis thaliana DNA chromosome 4, BAC clone F18A5 (ESSA project) Length = 118718 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 ggagaagaagcaagccgagg 258 |||||||||||||||||||| Sbjct: 37194 ggagaagaagcaagccgagg 37175
>emb|AJ547865.1|TNI547865 Tetraodon nigroviridis mRNA for class II helical cytokine receptor CRFB2 (crfb2 gene) Length = 1773 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 cctcctcctcctccggagct 92 |||||||||||||||||||| Sbjct: 1161 cctcctcctcctccggagct 1142
>emb|AJ544892.1|TNI544892 Tetraodon nigroviridis crfb1 gene, crfb2 gene, crfb3 gene, crfb4 gene, crfb5 gene, crfb6 gene and ORF1 DNA Length = 30094 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 cctcctcctcctccggagct 92 |||||||||||||||||||| Sbjct: 6724 cctcctcctcctccggagct 6705
>emb|CR354603.12| Zebrafish DNA sequence from clone CH211-106J11 in linkage group 24, complete sequence Length = 159582 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 tccacccccgccgcccccttcctc 29 |||| ||||||||||||||||||| Sbjct: 132480 tccagccccgccgcccccttcctc 132503
>emb|AJ720796.1| Gallus gallus mRNA for hypothetical protein, clone 25m21 Length = 3234 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 45 ccgccgtcctccgcgccgcctcgc 68 ||||||| |||||||||||||||| Sbjct: 102 ccgccgtgctccgcgccgcctcgc 79
>gb|AY112979.1| Coscoroba coscoroba mitochondrial D-loop, partial sequence Length = 1230 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 agaagaggaaccagaggcgc 155 |||||||||||||||||||| Sbjct: 662 agaagaggaaccagaggcgc 643
>gb|AF424592.1|AF424592 Arabidopsis thaliana AT4g13710/F18A5_100 mRNA, complete cds Length = 1966 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 ggagaagaagcaagccgagg 258 |||||||||||||||||||| Sbjct: 1699 ggagaagaagcaagccgagg 1680
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 cgccggacctcctcctcctc 85 |||||||||||||||||||| Sbjct: 8946058 cgccggacctcctcctcctc 8946039
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 45 ccgccgtcctccgcgccgcctcgc 68 |||||| ||||||||||||||||| Sbjct: 27901615 ccgccggcctccgcgccgcctcgc 27901592
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 ccgccgcccccttcctctgc 32 |||||||||||||||||||| Sbjct: 2675012 ccgccgcccccttcctctgc 2675031
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 ccgccgcccccttcctctgc 32 |||||||||||||||||||| Sbjct: 33873867 ccgccgcccccttcctctgc 33873886
>gb|AC105734.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0050N02, complete sequence Length = 133373 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 ccgccgcccccttcctctgc 32 |||||||||||||||||||| Sbjct: 19821 ccgccgcccccttcctctgc 19840
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome Length = 3544776 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 238 gggagaagaagcaagccgaggagccggagaac 269 |||||||||||| |||||||||| ||||||| Sbjct: 1141895 gggagaagaagctggccgaggagcaggagaac 1141926
>dbj|AP003293.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0691E06 Length = 166497 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 ccgccgcccccttcctctgc 32 |||||||||||||||||||| Sbjct: 112914 ccgccgcccccttcctctgc 112933
>dbj|AP003221.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0003D09 Length = 161970 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 ccgccgcccccttcctctgc 32 |||||||||||||||||||| Sbjct: 5310 ccgccgcccccttcctctgc 5329
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 ccgccgtcctccgcgccgcc 64 |||||||||||||||||||| Sbjct: 3438356 ccgccgtcctccgcgccgcc 3438337
>dbj|AP003723.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0003H08 Length = 142068 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 45 ccgccgtcctccgcgccgcctcgc 68 |||||| ||||||||||||||||| Sbjct: 55538 ccgccggcctccgcgccgcctcgc 55515
>dbj|AP005801.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0045M11 Length = 159148 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 cgccggacctcctcctcctc 85 |||||||||||||||||||| Sbjct: 106365 cgccggacctcctcctcctc 106346
>dbj|BS000236.1| Pan troglodytes chromosome 22 clone:PTB-058L13, map 22, complete sequences Length = 160456 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 122 ggggctgagggacaagaagaggaa 145 ||||||||||| |||||||||||| Sbjct: 5556 ggggctgaggggcaagaagaggaa 5579
>dbj|BS000234.1| Pan troglodytes chromosome 22 clone:PTB-190I13, map 22, complete sequences Length = 174520 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 122 ggggctgagggacaagaagaggaa 145 ||||||||||| |||||||||||| Sbjct: 97271 ggggctgaggggcaagaagaggaa 97294
>dbj|BS000235.1| Pan troglodytes chromosome 22 clone:PTB-013J17, map 22, complete sequences Length = 100580 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 122 ggggctgagggacaagaagaggaa 145 ||||||||||| |||||||||||| Sbjct: 47957 ggggctgaggggcaagaagaggaa 47980
>emb|AL049831.2|CNS00008 Human chromosome 14 DNA sequence BAC R-330O19 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 218956 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 cagtttggggctgttaaaag 361 |||||||||||||||||||| Sbjct: 195224 cagtttggggctgttaaaag 195243
>dbj|AP003061.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-100P11, complete sequence Length = 176129 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 ggaaagagcagaggatccgg 239 |||||||||||||||||||| Sbjct: 153177 ggaaagagcagaggatccgg 153158
>dbj|AP001751.1| Homo sapiens genomic DNA, chromosome 21q, section 95/105 Length = 340000 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 122 ggggctgagggacaagaagaggaa 145 ||||||||||| |||||||||||| Sbjct: 68080 ggggctgaggggcaagaagaggaa 68103
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 cgacggcaaggatttcctgc 210 |||||||||||||||||||| Sbjct: 1922144 cgacggcaaggatttcctgc 1922125
>dbj|AP003069.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-417F7, complete sequence Length = 171976 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 ggaaagagcagaggatccgg 239 |||||||||||||||||||| Sbjct: 53382 ggaaagagcagaggatccgg 53363
>emb|AJ509692.1|AME509692 Apis mellifera microsatellite marker Am0461=Ac161 Length = 137 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 gccggacctcctcctcctcc 86 |||||||||||||||||||| Sbjct: 123 gccggacctcctcctcctcc 104
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 cggagaacacggccaccgtc 281 |||||||||||||||||||| Sbjct: 1320954 cggagaacacggccaccgtc 1320935
>gb|AE016815.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome II, complete sequence Length = 867699 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 gccggacctcctcctcctcc 86 |||||||||||||||||||| Sbjct: 468250 gccggacctcctcctcctcc 468231
>emb|AL845285.5| Mouse DNA sequence from clone RP23-167M2 on chromosome 2, complete sequence Length = 143280 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 aggggaaagagcagaggatc 236 |||||||||||||||||||| Sbjct: 36414 aggggaaagagcagaggatc 36433
>emb|AL132633.2|CNS01DT3 Human chromosome 14 DNA sequence BAC C-2216L14 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 120571 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 cagtttggggctgttaaaag 361 |||||||||||||||||||| Sbjct: 107766 cagtttggggctgttaaaag 107747
>dbj|AP001046.1| Homo sapiens genomic DNA, chromosome 21, clone:KB43F12, MX1-D21S171 region, complete sequence Length = 158063 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 122 ggggctgagggacaagaagaggaa 145 ||||||||||| |||||||||||| Sbjct: 68080 ggggctgaggggcaagaagaggaa 68103 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,390,841 Number of Sequences: 3902068 Number of extensions: 4390841 Number of successful extensions: 413281 Number of sequences better than 10.0: 77 Number of HSP's better than 10.0 without gapping: 77 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 411612 Number of HSP's gapped (non-prelim): 1660 length of query: 424 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 402 effective length of database: 17,147,199,772 effective search space: 6893174308344 effective search space used: 6893174308344 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)