ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl43a11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds Length = 2910 Score = 696 bits (351), Expect = 0.0 Identities = 395/406 (97%), Gaps = 3/406 (0%) Strand = Plus / Plus Query: 8 caccacagcgagctaacttagcaagcgtgccacactccccagagatcgagcgaagatgtt 67 |||| |||||||||||||||| ||||||||||||||||| ||||||||||| |||||| | Sbjct: 12 caccgcagcgagctaacttag-aagcgtgccacactccc-agagatcgagc-aagatgct 68 Query: 68 tggcgtcggcggcatcgtgagcgacctgacggggggcctccggggcgcccacctcaaggg 127 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 69 tggcgtcggcggcatcgtgagcgacttgacggggggcatccggggcgcccacctcaaggg 128 Query: 128 ctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgccaccgtcat 187 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 129 ctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcccacgtcat 188 Query: 188 ggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagctccaccaa 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 189 ggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagctccaccaa 248 Query: 248 cgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggcgaacctggagcagtg 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 249 cgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggcgaacctggagcagtg 308 Query: 308 gctcctgccgacgaacctgccgttcatcaccaccggcgagaacaagttcgccgtcacctt 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 309 gctcctgccgacgaacctgccgttcatcaccaccggcgagaacaagttcgccgtcacctt 368 Query: 368 cgactggtcggnggacaagctgggggtgccgggcgccatcatcgtc 413 ||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct: 369 cgactggtcggtggacaagctgggggtgccgggggccatcatcgtc 414
>ref|XM_469655.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2613 Score = 202 bits (102), Expect = 6e-49 Identities = 174/198 (87%) Strand = Plus / Plus Query: 113 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 172 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 42 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 101 Query: 173 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagct 232 ||||||||||||||| |||||| || ||||| |||||||||||||||||||||||||||| Sbjct: 102 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagct 161 Query: 233 catcagctccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggc 292 | |||||||| || |||||||| |||||| || | |||| |||||| ||||||| Sbjct: 162 cgtcagctcctccctcgtcgaccccaacaatgggaacagggggagggtggggacggaggc 221 Query: 293 gaacctggagcagtggct 310 || ||||||||||||||| Sbjct: 222 gagcctggagcagtggct 239
>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full insert sequence Length = 2928 Score = 202 bits (102), Expect = 6e-49 Identities = 174/198 (87%) Strand = Plus / Plus Query: 113 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 172 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 157 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 216 Query: 173 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagct 232 ||||||||||||||| |||||| || ||||| |||||||||||||||||||||||||||| Sbjct: 217 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagct 276 Query: 233 catcagctccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggc 292 | |||||||| || |||||||| |||||| || | |||| |||||| ||||||| Sbjct: 277 cgtcagctcctccctcgtcgaccccaacaatgggaacagggggagggtggggacggaggc 336 Query: 293 gaacctggagcagtggct 310 || ||||||||||||||| Sbjct: 337 gagcctggagcagtggct 354
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 188 bits (95), Expect = 1e-44 Identities = 131/143 (91%) Strand = Plus / Plus Query: 113 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 172 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 30023301 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 30023360 Query: 173 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagct 232 ||||||||||||||| |||||| || ||||| |||||||||||||||||||||||||||| Sbjct: 30023361 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagct 30023420 Query: 233 catcagctccaccaacgtcgacc 255 | |||||||| || |||||||| Sbjct: 30023421 cgtcagctcctccctcgtcgacc 30023443 Score = 135 bits (68), Expect = 1e-28 Identities = 119/136 (87%) Strand = Plus / Plus Query: 120 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 179 ||||||||| | || || |||||||||||||||| |||||| ||||||||||||||||| Sbjct: 27798757 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 27798816 Query: 180 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 239 |||||||| |||||| || |||| |||||||| |||||||||||||||||||||||| Sbjct: 27798817 accgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgccagctcatcagc 27798876 Query: 240 tccaccaacgtcgacc 255 |||||| |||||||| Sbjct: 27798877 tccaccgccgtcgacc 27798892 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 273 gggaaggtgggcgcggaggcgaacctggagcagtggct 310 ||||||||||| |||||||||| ||||||||||||||| Sbjct: 27799308 gggaaggtgggggcggaggcgagcctggagcagtggct 27799345 Score = 44.1 bits (22), Expect = 0.35 Identities = 34/38 (89%) Strand = Plus / Plus Query: 273 gggaaggtgggcgcggaggcgaacctggagcagtggct 310 |||| |||||| ||||||||| ||||||||||||||| Sbjct: 30023539 gggagggtggggacggaggcgagcctggagcagtggct 30023576 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 381 gacaagctgggggtgccgggcgccatcatcgtc 413 |||||||| || |||||||| |||||||||||| Sbjct: 27799413 gacaagctcggcgtgccgggggccatcatcgtc 27799445 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 ggcgtcggcggcatcgtgag 88 |||||||||||||||||||| Sbjct: 24817033 ggcgtcggcggcatcgtgag 24817052
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete sequence Length = 155106 Score = 188 bits (95), Expect = 1e-44 Identities = 131/143 (91%) Strand = Plus / Minus Query: 113 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 172 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 84450 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 84391 Query: 173 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagct 232 ||||||||||||||| |||||| || ||||| |||||||||||||||||||||||||||| Sbjct: 84390 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagct 84331 Query: 233 catcagctccaccaacgtcgacc 255 | |||||||| || |||||||| Sbjct: 84330 cgtcagctcctccctcgtcgacc 84308 Score = 44.1 bits (22), Expect = 0.35 Identities = 34/38 (89%) Strand = Plus / Minus Query: 273 gggaaggtgggcgcggaggcgaacctggagcagtggct 310 |||| |||||| ||||||||| ||||||||||||||| Sbjct: 84212 gggagggtggggacggaggcgagcctggagcagtggct 84175
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 188 bits (95), Expect = 1e-44 Identities = 131/143 (91%) Strand = Plus / Plus Query: 113 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 172 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 30114723 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 30114782 Query: 173 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagct 232 ||||||||||||||| |||||| || ||||| |||||||||||||||||||||||||||| Sbjct: 30114783 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagct 30114842 Query: 233 catcagctccaccaacgtcgacc 255 | |||||||| || |||||||| Sbjct: 30114843 cgtcagctcctccctcgtcgacc 30114865 Score = 135 bits (68), Expect = 1e-28 Identities = 119/136 (87%) Strand = Plus / Plus Query: 120 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 179 ||||||||| | || || |||||||||||||||| |||||| ||||||||||||||||| Sbjct: 27890081 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 27890140 Query: 180 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 239 |||||||| |||||| || |||| |||||||| |||||||||||||||||||||||| Sbjct: 27890141 accgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgccagctcatcagc 27890200 Query: 240 tccaccaacgtcgacc 255 |||||| |||||||| Sbjct: 27890201 tccaccgccgtcgacc 27890216 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 273 gggaaggtgggcgcggaggcgaacctggagcagtggct 310 ||||||||||| |||||||||| ||||||||||||||| Sbjct: 27890632 gggaaggtgggggcggaggcgagcctggagcagtggct 27890669 Score = 44.1 bits (22), Expect = 0.35 Identities = 34/38 (89%) Strand = Plus / Plus Query: 273 gggaaggtgggcgcggaggcgaacctggagcagtggct 310 |||| |||||| ||||||||| ||||||||||||||| Sbjct: 30114961 gggagggtggggacggaggcgagcctggagcagtggct 30114998 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 381 gacaagctgggggtgccgggcgccatcatcgtc 413 |||||||| || |||||||| |||||||||||| Sbjct: 27890737 gacaagctcggcgtgccgggggccatcatcgtc 27890769 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 ggcgtcggcggcatcgtgag 88 |||||||||||||||||||| Sbjct: 24908356 ggcgtcggcggcatcgtgag 24908375
>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 Length = 2830 Score = 186 bits (94), Expect = 4e-44 Identities = 172/198 (86%) Strand = Plus / Plus Query: 113 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 172 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 139 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 198 Query: 173 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagct 232 ||||||||||||||| || || || ||||| |||||||||||||||||||||||||||| Sbjct: 199 cggcgccaccgtcatcgagcgcatctccgagttcctcggccgcggcgtcacctgccagct 258 Query: 233 catcagctccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggc 292 | |||||||| || |||||||| |||||| || | |||| |||||| ||||||| Sbjct: 259 cgtcagctcctccctcgtcgaccccaacaatgggaacagggggagggtggggacggaggc 318 Query: 293 gaacctggagcagtggct 310 || ||||||||||||||| Sbjct: 319 gagcctggagcagtggct 336
>gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds Length = 2818 Score = 176 bits (89), Expect = 4e-41 Identities = 164/189 (86%) Strand = Plus / Plus Query: 120 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 179 ||||||||| | || || |||||||||||||||| ||| ||| ||||||||||||||||| Sbjct: 123 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 182 Query: 180 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 239 ||| |||| |||||| || |||| |||||||| ||||||||||||||||| |||||| Sbjct: 183 accatcatcgacggcatcggcgagttcctcggcaagggcgtcacctgccagcttatcagc 242 Query: 240 tccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggcgaacctg 299 |||||| ||||||||| ||||||| || |||||||||||||||||||||||| | ||| Sbjct: 243 tccaccgccgtcgaccaagacaacggcggtcgcgggaaggtgggcgcggaggcggagctg 302 Query: 300 gagcagtgg 308 ||||||||| Sbjct: 303 gagcagtgg 311 Score = 65.9 bits (33), Expect = 1e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 350 caagttcgccgtcaccttcgactggtcggnggacaagctgggggtgccgggcgccatcat 409 |||||||| | |||||||||||||| || ||| ||||| |||||||||||||||||| | Sbjct: 347 caagttcggcctcaccttcgactgggaggtggagaagctcggggtgccgggcgccatcgt 406 Query: 410 cgtc 413 |||| Sbjct: 407 cgtc 410
>ref|XM_469409.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2601 Score = 172 bits (87), Expect = 6e-40 Identities = 165/191 (86%) Strand = Plus / Plus Query: 120 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 179 ||||||||| | || || |||||||||||||||| |||||| ||||||||||||||||| Sbjct: 52 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 111 Query: 180 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 239 |||||||| |||||| || |||| |||||||| |||||||||||||||||||||||| Sbjct: 112 accgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgccagctcatcagc 171 Query: 240 tccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggcgaacctg 299 |||||| |||||||| |||||||| || ||||||||||| |||||||||| |||| Sbjct: 172 tccaccgccgtcgacccaaacaacggcaaccgggggaaggtgggggcggaggcgagcctg 231 Query: 300 gagcagtggct 310 ||||||||||| Sbjct: 232 gagcagtggct 242 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 381 gacaagctgggggtgccgggcgccatcatcgtc 413 |||||||| || |||||||| |||||||||||| Sbjct: 310 gacaagctcggcgtgccgggggccatcatcgtc 342
>gb|AF329371.1|AF329371 Zea mays lipoxygenase mRNA, complete cds Length = 2595 Score = 167 bits (84), Expect = 4e-38 Identities = 241/294 (81%), Gaps = 6/294 (2%) Strand = Plus / Plus Query: 120 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 179 ||||||||| | || || |||||||||||||||| ||| ||| ||||||||||||||||| Sbjct: 52 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 111 Query: 180 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 239 |||||| | ||| || ||| |||| |||||||| || ||||||||||||||||||||| Sbjct: 112 accgtcgttgacagcatcagcgagttcctcggcaagggggtcacctgccagctcatcagc 171 Query: 240 tccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggcgaacctg 299 |||||| ||||||| ||||||||| |||||| ||| || ||||||||||||||| Sbjct: 172 tccaccctcgtcgacgccaacaacggcaaccgcgggcgggtcggggcggaggcgaacctg 231 Query: 300 gagcagtggctcctgccgacgaacctgccgttcatcaccaccggcgagaacaagttcgcc 359 ||||||||||| ||||| |||||||| | || ||||||||| |||||||| | Sbjct: 232 gagcagtggct------gacgagcctgccgtcgctgacgaccggcgagtccaagttcggc 285 Query: 360 gtcaccttcgactggtcggnggacaagctgggggtgccgggcgccatcatcgtc 413 ||||| ||||||||| || ||| |||||||| |||||||| ||| || ||||| Sbjct: 286 gtcacgttcgactgggaggtggagaagctgggagtgccgggggccgtcgtcgtc 339
>gb|AF457968.1| Zea mays clone cho1c.pk002.j23, mRNA sequence Length = 515 Score = 167 bits (84), Expect = 4e-38 Identities = 241/294 (81%), Gaps = 6/294 (2%) Strand = Plus / Plus Query: 120 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 179 ||||||||| | || || |||||||||||||||| ||| ||| ||||||||||||||||| Sbjct: 114 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 173 Query: 180 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 239 |||||| | ||| || ||| |||| |||||||| || ||||||||||||||||||||| Sbjct: 174 accgtcgttgacagcatcagcgagttcctcggcaagggggtcacctgccagctcatcagc 233 Query: 240 tccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggcgaacctg 299 |||||| ||||||| ||||||||| |||||| ||| || ||||||||||||||| Sbjct: 234 tccaccctcgtcgacgccaacaacggcaaccgcgggcgggtcggggcggaggcgaacctg 293 Query: 300 gagcagtggctcctgccgacgaacctgccgttcatcaccaccggcgagaacaagttcgcc 359 ||||||||||| ||||| |||||||| | || ||||||||| |||||||| | Sbjct: 294 gagcagtggct------gacgagcctgccgtcgctgacgaccggcgagtccaagttcggc 347 Query: 360 gtcaccttcgactggtcggnggacaagctgggggtgccgggcgccatcatcgtc 413 ||||| ||||||||| || ||| |||||||| |||||||| ||| || ||||| Sbjct: 348 gtcacgttcgactgggaggtggagaagctgggagtgccgggggccgtcgtcgtc 401
>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16 map S2606, complete sequence Length = 124140 Score = 135 bits (68), Expect = 1e-28 Identities = 119/136 (87%) Strand = Plus / Plus Query: 120 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 179 ||||||||| | || || |||||||||||||||| |||||| ||||||||||||||||| Sbjct: 42887 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 42946 Query: 180 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 239 |||||||| |||||| || |||| |||||||| |||||||||||||||||||||||| Sbjct: 42947 accgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgccagctcatcagc 43006 Query: 240 tccaccaacgtcgacc 255 |||||| |||||||| Sbjct: 43007 tccaccgccgtcgacc 43022 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 273 gggaaggtgggcgcggaggcgaacctggagcagtggct 310 ||||||||||| |||||||||| ||||||||||||||| Sbjct: 43438 gggaaggtgggggcggaggcgagcctggagcagtggct 43475 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 381 gacaagctgggggtgccgggcgccatcatcgtc 413 |||||||| || |||||||| |||||||||||| Sbjct: 43543 gacaagctcggcgtgccgggggccatcatcgtc 43575
>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence Length = 119329 Score = 135 bits (68), Expect = 1e-28 Identities = 119/136 (87%) Strand = Plus / Minus Query: 120 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 179 ||||||||| | || || |||||||||||||||| |||||| ||||||||||||||||| Sbjct: 15136 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 15077 Query: 180 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 239 |||||||| |||||| || |||| |||||||| |||||||||||||||||||||||| Sbjct: 15076 accgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgccagctcatcagc 15017 Query: 240 tccaccaacgtcgacc 255 |||||| |||||||| Sbjct: 15016 tccaccgccgtcgacc 15001 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 273 gggaaggtgggcgcggaggcgaacctggagcagtggct 310 ||||||||||| |||||||||| ||||||||||||||| Sbjct: 14585 gggaaggtgggggcggaggcgagcctggagcagtggct 14548 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 381 gacaagctgggggtgccgggcgccatcatcgtc 413 |||||||| || |||||||| |||||||||||| Sbjct: 14480 gacaagctcggcgtgccgggggccatcatcgtc 14448
>gb|AF271894.1|AF271894 Zea mays lipoxygenase (LOX) mRNA, complete cds Length = 2845 Score = 125 bits (63), Expect = 1e-25 Identities = 99/111 (89%) Strand = Plus / Plus Query: 200 cgagctcctcggccgcggcgtcacctgccagctcatcagctccaccaacgtcgaccacaa 259 |||| |||||||||||||||||||||||||||| |||||||||||| |||||||| || Sbjct: 153 cgagttcctcggccgcggcgtcacctgccagcttatcagctccaccgtcgtcgaccctaa 212 Query: 260 caacggtgggcgcgggaaggtgggcgcggaggcgaacctggagcagtggct 310 |||||| ||||||||| ||||||||||||||| ||||||||||||||| Sbjct: 213 caacggcaaccgcgggaagttgggcgcggaggcgagcctggagcagtggct 263 Score = 56.0 bits (28), Expect = 9e-05 Identities = 60/71 (84%) Strand = Plus / Plus Query: 343 gcgagaacaagttcgccgtcaccttcgactggtcggnggacaagctgggggtgccgggcg 402 |||||||| ||||| |||||||||||||||| || ||| |||| ||| | ||||||| Sbjct: 290 gcgagaaccagttccgcgtcaccttcgactgggaggtggagaagcagggcatcccgggcg 349 Query: 403 ccatcatcgtc 413 ||||||||||| Sbjct: 350 ccatcatcgtc 360
>gb|AF464895.1| Oryza sativa basmati-370 lipoxygenase (Lox) gene, partial cds Length = 1160 Score = 117 bits (59), Expect = 3e-23 Identities = 89/99 (89%) Strand = Plus / Plus Query: 144 cgcaagaacgcgctcgacttcaacgacttcggcgccaccgtcatggacggcgtcaccgag 203 ||||||||||| |||||| ||||||||||||||||||||||| | | ||||| ||||| Sbjct: 1 cgcaagaacgccctcgacatcaacgacttcggcgccaccgtcctcgggcgcgtctccgag 60 Query: 204 ctcctcggccgcggcgtcacctgccagctcatcagctcc 242 ||||||||||||||||||||||||||||| |||||||| Sbjct: 61 ttcctcggccgcggcgtcacctgccagctcgtcagctcc 99
>gb|AF465643.1| Zea mays B73 lipoxygenase gene, complete cds Length = 5013 Score = 117 bits (59), Expect = 3e-23 Identities = 116/135 (85%) Strand = Plus / Plus Query: 120 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 179 ||||||||| | || || |||||||||||||||| ||| ||| ||||||||||||||||| Sbjct: 200 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 259 Query: 180 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 239 |||||| | ||| || ||| |||| |||||||| || ||||||||||||||||||||| Sbjct: 260 accgtcgttgacagcatcagcgagttcctcggcaagggggtcacctgccagctcatcagc 319 Query: 240 tccaccaacgtcgac 254 |||||| ||||||| Sbjct: 320 tccaccctcgtcgac 334 Score = 69.9 bits (35), Expect = 6e-09 Identities = 105/129 (81%), Gaps = 6/129 (4%) Strand = Plus / Plus Query: 285 gcggaggcgaacctggagcagtggctcctgccgacgaacctgccgttcatcaccaccggc 344 |||||||||||||||||||||||||| ||||| |||||||| | || |||||| Sbjct: 945 gcggaggcgaacctggagcagtggct------gacgagcctgccgtcgctgacgaccggc 998 Query: 345 gagaacaagttcgccgtcaccttcgactggtcggnggacaagctgggggtgccgggcgcc 404 ||| |||||||| |||||| ||||||||| || ||| |||||||| |||||||| ||| Sbjct: 999 gagtccaagttcggcgtcacgttcgactgggaggtggagaagctgggagtgccgggggcc 1058 Query: 405 atcatcgtc 413 || ||||| Sbjct: 1059 gtcgtcgtc 1067
>gb|U83904.1|HVU83904 Hordeum vulgare lipoxygenase isoenzyme 1 (Lox:Hv1) gene, promoter region and partial cds Length = 5236 Score = 115 bits (58), Expect = 1e-22 Identities = 109/126 (86%) Strand = Plus / Plus Query: 120 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 179 ||||||||| | || || |||||||||||||||| ||| ||| ||||||||||||||||| Sbjct: 3566 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 3625 Query: 180 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 239 ||| |||| |||||| || |||| |||||||| ||||||||||||||||| |||||| Sbjct: 3626 accatcatcgacggcatcggcgagttcctcggcaagggcgtcacctgccagcttatcagc 3685 Query: 240 tccacc 245 |||||| Sbjct: 3686 tccacc 3691 Score = 67.9 bits (34), Expect = 2e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 259 acaacggtgggcgcgggaaggtgggcgcggaggcgaacctggagcagtgg 308 ||||||| || |||||||||||||||||||||||| | |||||||||||| Sbjct: 4255 acaacggcggtcgcgggaaggtgggcgcggaggcggagctggagcagtgg 4304 Score = 65.9 bits (33), Expect = 1e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 350 caagttcgccgtcaccttcgactggtcggnggacaagctgggggtgccgggcgccatcat 409 |||||||| | |||||||||||||| || ||| ||||| |||||||||||||||||| | Sbjct: 4340 caagttcggcctcaccttcgactgggaggtggagaagctcggggtgccgggcgccatcgt 4399 Query: 410 cgtc 413 |||| Sbjct: 4400 cgtc 4403
>gb|AF465642.1| Zea mays Golden cross bantam-70 lipoxygenase gene, promoter region and partial cds Length = 3196 Score = 79.8 bits (40), Expect = 6e-12 Identities = 64/72 (88%) Strand = Plus / Plus Query: 184 tcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagctcca 243 ||||||||||| || |||| ||||||||||||||||||||||||| ||| ||||||||| Sbjct: 2387 tcatggacggcctcggcgagttcctcggccgcggcgtcacctgccaactcgtcagctcca 2446 Query: 244 ccaacgtcgacc 255 || |||||||| Sbjct: 2447 ccgtcgtcgacc 2458 Score = 52.0 bits (26), Expect = 0.001 Identities = 61/73 (83%) Strand = Plus / Plus Query: 340 ccggcgagaacaagttcgccgtcaccttcgactggtcggnggacaagctgggggtgccgg 399 |||||||| || ||||| |||||||||||||||| || ||| |||| || || |||| Sbjct: 2808 ccggcgaggaccagttccgcgtcaccttcgactgggaggtggagaagcacggcgtcccgg 2867 Query: 400 gcgccatcatcgt 412 ||||||||||||| Sbjct: 2868 gcgccatcatcgt 2880 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Plus Query: 270 cgcgggaaggtgggcgcggaggcgaacctggagcagtggctcctgc 315 |||||||||||||| |||||||| ||||||||||||||| |||| Sbjct: 2744 cgcgggaaggtgggtcaggaggcgagcctggagcagtggctgctgc 2789
>gb|AE005807.1| Caulobacter crescentus CB15 section 133 of 359 of the complete genome Length = 8803 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Plus Query: 152 cgcgctcgacttcaacgacttcggcg 177 ||||| |||||||||||||||||||| Sbjct: 4469 cgcgcacgacttcaacgacttcggcg 4494
>ref|NM_003028.1| Homo sapiens Src homology 2 domain containing adaptor protein B (SHB), mRNA Length = 2306 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 97 cggggggcctccggggcgccc 117 ||||||||||||||||||||| Sbjct: 469 cggggggcctccggggcgccc 449
>gb|AY596511.1| Helicosporidium sp. ex Simulium jonesii gamma-carbonic anhydrase mRNA, partial cds Length = 775 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 173 cggcgccaccgtcatggacggcgtcaccg 201 ||||||||| ||||||||||||| ||||| Sbjct: 400 cggcgccacggtcatggacggcgccaccg 428
>emb|X75342.1|HSSHB H.sapiens SHB mRNA Length = 2306 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 97 cggggggcctccggggcgccc 117 ||||||||||||||||||||| Sbjct: 469 cggggggcctccggggcgccc 449
>gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0088L13 map near C50029S, complete sequence Length = 129900 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 ggcgtcggcggcatcgtgag 88 |||||||||||||||||||| Sbjct: 52268 ggcgtcggcggcatcgtgag 52287
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 gctcctgccgacgaacctgc 327 |||||||||||||||||||| Sbjct: 137505 gctcctgccgacgaacctgc 137486
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 322 acctgccgttcatcaccaccggcg 345 ||||||||||||||| |||||||| Sbjct: 288875 acctgccgttcatcatcaccggcg 288852
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 322 acctgccgttcatcaccaccggcg 345 ||||||||||||||| |||||||| Sbjct: 153202 acctgccgttcatcatcaccggcg 153225
>gb|AY316746.1| Rhizobium sp. NGR234 megaplasmid 2 contig 2, complete sequence Length = 236455 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 74 cggcggcatcgtgagcgacctgac 97 ||||||||||| |||||||||||| Sbjct: 205636 cggcggcatcgagagcgacctgac 205659
>emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete chromosome; segment 9/12 Length = 323450 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 74 cggcggcatcgtgagcgacctgac 97 ||||||||||| |||||||||||| Sbjct: 80122 cggcggcatcgagagcgacctgac 80099
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 ggtgccgggcgccatcatcg 411 |||||||||||||||||||| Sbjct: 608859 ggtgccgggcgccatcatcg 608840
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 agctcctcggccgcggcgtc 221 |||||||||||||||||||| Sbjct: 1962239 agctcctcggccgcggcgtc 1962220
>gb|AC124918.5| Rattus norvegicus 4 BAC CH230-4H1 (Children's Hospital Oakland Research Institute) complete sequence Length = 228052 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 agctcatcagctccaccaac 248 |||||||||||||||||||| Sbjct: 82121 agctcatcagctccaccaac 82102
>ref|XM_967239.1| PREDICTED: Tribolium castaneum similar to CG11980-PC, isoform C (LOC661050), mRNA Length = 1156 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 caccaacgtcgaccacaaca 261 |||||||||||||||||||| Sbjct: 239 caccaacgtcgaccacaaca 220
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 gccgttcatcaccaccggcg 345 |||||||||||||||||||| Sbjct: 1867059 gccgttcatcaccaccggcg 1867040
>emb|AL731878.4|CNS08C8I Oryza sativa chromosome 3, . BAC OSJNBb0116P11 of library OSJNBb from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 128559 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 ggcgtcggcggcatcgtgag 88 |||||||||||||||||||| Sbjct: 103984 ggcgtcggcggcatcgtgag 104003
>gb|AC079160.5| Homo sapiens BAC clone RP11-176K15 from 4, complete sequence Length = 147727 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 acctggagcagtggctcctg 314 |||||||||||||||||||| Sbjct: 78731 acctggagcagtggctcctg 78750
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 172 tcggcgccaccgtcatggacggcg 195 ||||||||| |||||||||||||| Sbjct: 2990742 tcggcgccatcgtcatggacggcg 2990719
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 69 ggcgtcggcggcatcgtgagcgac 92 |||||||||||||||||| ||||| Sbjct: 5079435 ggcgtcggcggcatcgtgcgcgac 5079412
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 69 ggcgtcggcggcatcgtgagcgac 92 |||||||||||||||||| ||||| Sbjct: 590306 ggcgtcggcggcatcgtgcgcgac 590329 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 142 tgcgcaagaacgcgctcgacttca 165 ||||||||||| |||||||||||| Sbjct: 206796 tgcgcaagaacccgctcgacttca 206773
>dbj|AK109329.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-B01, full insert sequence Length = 1556 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 ggcgtcggcggcatcgtgag 88 |||||||||||||||||||| Sbjct: 613 ggcgtcggcggcatcgtgag 594
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 5.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 188 ggacggcgtcaccgagctcctcggccgcggcg 219 ||||||||| | |||| ||||||||||||||| Sbjct: 1448865 ggacggcgtgatcgagttcctcggccgcggcg 1448834
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 69 ggcgtcggcggcatcgtgagcgac 92 |||||||||||||||||| ||||| Sbjct: 657733 ggcgtcggcggcatcgtgcgcgac 657756 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,262,489 Number of Sequences: 3902068 Number of extensions: 2262489 Number of successful extensions: 49660 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48478 Number of HSP's gapped (non-prelim): 1174 length of query: 413 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 391 effective length of database: 17,147,199,772 effective search space: 6704555110852 effective search space used: 6704555110852 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
