ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl43a10 |
|---|---|
| Clone Library Name | barley_pub |
>RPOB_PSESM (Q889X8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1357 Score = 33.9 bits (76), Expect = 0.16 Identities = 20/60 (33%), Positives = 32/60 (53%) Frame = +2 Query: 212 GIMVSASTGVMNSLLGKLATLMGEEFAKLKNLRKEVKYISDELSSMKDALESLADVDVLD 391 G ++ G+ LG+ M EE K+ LRK + I +E+ ++ALE L D ++LD Sbjct: 1127 GQILETHLGLAAKGLGEKINRMLEEQRKVIELRKFLNEIYNEIGGRQEALEDLTDNEILD 1186
>RPOB_PSEU2 (Q4ZMN7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1357 Score = 33.5 bits (75), Expect = 0.21 Identities = 19/60 (31%), Positives = 32/60 (53%) Frame = +2 Query: 212 GIMVSASTGVMNSLLGKLATLMGEEFAKLKNLRKEVKYISDELSSMKDALESLADVDVLD 391 G ++ G+ LG+ M EE K+ LRK + I +E+ +++LE L D ++LD Sbjct: 1127 GQILETHLGLAAKGLGEKINRMLEEQRKVAELRKFLNEIYNEIGGRQESLEDLTDNEILD 1186
>RPOB_PSE14 (Q48D29) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1357 Score = 33.5 bits (75), Expect = 0.21 Identities = 19/60 (31%), Positives = 32/60 (53%) Frame = +2 Query: 212 GIMVSASTGVMNSLLGKLATLMGEEFAKLKNLRKEVKYISDELSSMKDALESLADVDVLD 391 G ++ G+ LG+ M EE K+ LRK + I +E+ +++LE L D ++LD Sbjct: 1127 GQILETHLGLAAKGLGEKINRMLEEQRKVAELRKFLNEIYNEIGGRQESLEDLTDNEILD 1186
>SYS_RICCN (Q92GA7) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 425 Score = 31.2 bits (69), Expect = 1.0 Identities = 15/50 (30%), Positives = 34/50 (68%) Frame = +2 Query: 239 VMNSLLGKLATLMGEEFAKLKNLRKEVKYISDELSSMKDALESLADVDVL 388 V + +LG +A+ GEEF + L+++VK+I+++L +++ L + +++ L Sbjct: 53 VKSKILGNMASKSGEEF---EGLQRDVKHINEKLEALEQDLNNNNELNEL 99
>GVPC1_HALSA (P24574) Gas vesicle protein C 1| Length = 382 Score = 30.8 bits (68), Expect = 1.4 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 4/44 (9%) Frame = +2 Query: 278 GEEFA-KLKNLRKEVKYISDELSSMKDALESLADV---DVLDKQ 397 G+EFA ++ +LR ++ D + M+DA E+ AD+ D+ DKQ Sbjct: 67 GDEFAAEVDHLRADIDAQRDVIREMQDAFEAYADIFATDIADKQ 110
>DHYS_HUMAN (P49366) Deoxyhypusine synthase (EC 2.5.1.46) (DHS)| Length = 369 Score = 30.4 bits (67), Expect = 1.8 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 1/74 (1%) Frame = +2 Query: 95 STSPSGNCMLLLHCFSNLLRCIACITREQR*ILVQPEMTGIMVSASTGVMNSLLGKLA-T 271 S P +C + L SNL I+ RE LVQ M ++V+ + GV L+ LA T Sbjct: 90 SRRPLTSCTIFLGYTSNL---ISSGIRETIRYLVQHNMVDVLVTTAGGVEEDLIKCLAPT 146 Query: 272 LMGEEFAKLKNLRK 313 +GE + K LR+ Sbjct: 147 YLGEFSLRGKELRE 160
>DHYS_BOVIN (Q6EWQ6) Deoxyhypusine synthase (EC 2.5.1.46) (DHS)| Length = 369 Score = 30.4 bits (67), Expect = 1.8 Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 8/110 (7%) Frame = +2 Query: 95 STSPSGNCMLLLHCFSNLLRCIACITREQR*ILVQPEMTGIMVSASTGVMNSLLGKLA-T 271 S P C + L SNL I+ RE LVQ M ++V+ + GV + LA T Sbjct: 90 SRRPLTGCTIFLGYTSNL---ISSGIRETIRYLVQHNMVDVLVTTAGGVEEDFIKCLAPT 146 Query: 272 LMGEEFAKLKNLRK-------EVKYISDELSSMKDALESLADVDVLDKQT 400 +GE + K LR+ + +D +D L + D VL++ T Sbjct: 147 YLGEFSLRGKELRENGINRIGNLLVPNDNYCKFEDWLMPILDQMVLEQNT 196
>VATI_PYRAB (Q9UXU2) V-type ATP synthase subunit I (EC 3.6.3.14) (V-type ATPase| subunit I) Length = 659 Score = 30.4 bits (67), Expect = 1.8 Identities = 12/43 (27%), Positives = 27/43 (62%) Frame = +2 Query: 242 MNSLLGKLATLMGEEFAKLKNLRKEVKYISDELSSMKDALESL 370 + L+ + +GE K++ + EV +++E+S++KD+L +L Sbjct: 98 IEELIKDVEKFLGEAEPKIREVESEVSRLNNEISALKDSLNAL 140
>FBN1_HUMAN (P35555) Fibrillin-1 precursor| Length = 2871 Score = 30.0 bits (66), Expect = 2.3 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%) Frame = +3 Query: 54 LTTCYRAYVGSAVHLPL---HRETACCCSIVSA 143 L TC+ Y LP+ HR ACCCS+ +A Sbjct: 955 LETCFLRYEDEECTLPIAGRHRMDACCCSVGAA 987
>DHYS_RAT (Q6AY53) Deoxyhypusine synthase (EC 2.5.1.46) (DHS)| Length = 369 Score = 30.0 bits (66), Expect = 2.3 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Frame = +2 Query: 95 STSPSGNCMLLLHCFSNLLRCIACITREQR*ILVQPEMTGIMVSASTGVMNSLLGKLA-T 271 S P C + L SNL I+ RE LVQ M ++V+ + GV L+ LA T Sbjct: 90 SRRPLTGCTIFLGYTSNL---ISSGIRETIRYLVQHNMVDVLVTTAGGVEEDLIKCLAPT 146 Query: 272 LMGEEFAKLKNLRK 313 +GE + K LR+ Sbjct: 147 YLGEFSLRGKELRE 160
>FBN1_PIG (Q9TV36) Fibrillin-1 precursor| Length = 2871 Score = 29.6 bits (65), Expect = 3.0 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%) Frame = +3 Query: 54 LTTCYRAYVGSAVHLPL---HRETACCCSIVSA 143 L TC+ Y LP+ HR ACCCS+ +A Sbjct: 955 LETCFLRYEDEECTLPVVGRHRMDACCCSVGAA 987
>FBN1_MOUSE (Q61554) Fibrillin-1 precursor| Length = 2871 Score = 29.6 bits (65), Expect = 3.0 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%) Frame = +3 Query: 54 LTTCYRAYVGSAVHLPL---HRETACCCSIVSA 143 L TC+ Y LP+ HR ACCCS+ +A Sbjct: 955 LETCFLKYDDEECTLPIAGRHRMDACCCSVGAA 987
>FBN1_BOVIN (P98133) Fibrillin-1 precursor (MP340)| Length = 2871 Score = 29.6 bits (65), Expect = 3.0 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%) Frame = +3 Query: 54 LTTCYRAYVGSAVHLPL---HRETACCCSIVSA 143 L TC+ Y LP+ HR ACCCS+ +A Sbjct: 955 LETCFLRYEDEECTLPVAGRHRMDACCCSVGAA 987
>THAS_PIG (P47787) Thromboxane-A synthase (EC 5.3.99.5) (TXA synthase) (TXS)| Length = 534 Score = 28.9 bits (63), Expect = 5.1 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = -2 Query: 272 GWPAYPGESSLPRLKRSPLFQSSLAGQVFIFAL 174 G PA P + LPR PL + GQ F+F + Sbjct: 309 GCPADPSQPHLPRPLSKPLTVDEVVGQAFLFLI 341
>SYS_RICTY (Q68VW6) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 425 Score = 28.9 bits (63), Expect = 5.1 Identities = 13/50 (26%), Positives = 32/50 (64%) Frame = +2 Query: 239 VMNSLLGKLATLMGEEFAKLKNLRKEVKYISDELSSMKDALESLADVDVL 388 V + +LG + + GEEF + L+++V +I+++L ++ L++ +++ L Sbjct: 53 VKSKILGNMVSKSGEEF---EELQRDVNHINEKLEELEQTLDNNNELNEL 99
>COL39_CAEEL (Q09455) Cuticle collagen 39 precursor| Length = 323 Score = 28.5 bits (62), Expect = 6.7 Identities = 19/63 (30%), Positives = 28/63 (44%) Frame = +1 Query: 124 AAPLFQQPAQVHRMYN*RAKINTCPARDDWNNGERFNRGNELSPG*AGHPDGGGVRQAKE 303 A +F + + H N + + CPA G +RG + PG AG+P GV K Sbjct: 67 ARSVFVRRHKKHSQCNCGPQASNCPAGPPGPPGAPGDRGLDGQPGGAGNPGQPGVAGPKS 126 Query: 304 LEE 312 E+ Sbjct: 127 HEQ 129
>SYS_RICPR (Q9ZCG5) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 425 Score = 28.5 bits (62), Expect = 6.7 Identities = 13/50 (26%), Positives = 33/50 (66%) Frame = +2 Query: 239 VMNSLLGKLATLMGEEFAKLKNLRKEVKYISDELSSMKDALESLADVDVL 388 V + +LG + + GEEF + L+++V +I+++L+ ++ L++ +++ L Sbjct: 53 VKSKILGNMVSKSGEEF---EELQRDVNHINEKLAELEQNLDNNNELNEL 99
>PFD6_DROME (Q9VW56) Probable prefoldin subunit 6| Length = 125 Score = 28.5 bits (62), Expect = 6.7 Identities = 12/24 (50%), Positives = 18/24 (75%) Frame = +2 Query: 299 KNLRKEVKYISDELSSMKDALESL 370 +N+ K ++YIS EL S DALE++ Sbjct: 77 QNVGKRIEYISKELKSSTDALENM 100
>ENH2_HUMAN (Q9N2J9) HERV-H_3q26 provirus ancestral Env polyprotein precursor| (Envelope polyprotein) (Env protein HERV-H/p60) (HERV-H/env60) [Contains: Surface protein (SU); Transmembrane protein (TM)] Length = 563 Score = 28.5 bits (62), Expect = 6.7 Identities = 20/76 (26%), Positives = 40/76 (52%) Frame = +2 Query: 170 TREQR*ILVQPEMTGIMVSASTGVMNSLLGKLATLMGEEFAKLKNLRKEVKYISDELSSM 349 TR++R I + P M G+ +SAST + + + ++T + + + IS LS + Sbjct: 383 TRQKRVIPLIPLMVGLGLSASTVALGTGIAGISTSVTTFRILSNDFSASITDISQTLSGL 442 Query: 350 KDALESLADVDVLDKQ 397 + ++S A V + ++Q Sbjct: 443 QAQVDSSAAVVLQNRQ 458
>TRUB_ANAMM (Q5PAY2) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA| pseudouridine 55 synthase) (Psi55 synthase) (tRNA-uridine isomerase) (tRNA pseudouridylate synthase) Length = 306 Score = 28.1 bits (61), Expect = 8.8 Identities = 15/29 (51%), Positives = 19/29 (65%) Frame = +2 Query: 308 RKEVKYISDELSSMKDALESLADVDVLDK 394 RK V S+E S D LE+LAD DVL++ Sbjct: 199 RKSVGPFSEENSVTLDRLEALADADVLNE 227
>PRS10_CAEEL (O17071) Probable 26S protease regulatory subunit S10B (Proteasome| regulatory particle ATPase-like protein 4) Length = 406 Score = 28.1 bits (61), Expect = 8.8 Identities = 19/63 (30%), Positives = 32/63 (50%) Frame = +2 Query: 191 LVQPEMTGIMVSASTGVMNSLLGKLATLMGEEFAKLKNLRKEVKYISDELSSMKDALESL 370 +V+P I+ T +NS KLA E KLK+LRK+ ++ + ++ ++SL Sbjct: 9 MVEPTGPAIVEDERTKALNSYRRKLAECRDIE-QKLKDLRKKESEMTKQFDKSENDIKSL 67 Query: 371 ADV 379 V Sbjct: 68 QSV 70
>PAX9_PERPO (Q2VL54) Paired box protein Pax-9| Length = 341 Score = 28.1 bits (61), Expect = 8.8 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -2 Query: 317 PPSSSSLAWRTPPPSGWPAYPGESSLPR 234 P S+ A + P P G PA PG ++PR Sbjct: 163 PSPISAAAAKVPTPPGVPAIPGSVAMPR 190
>RABL_MIMIV (Q5UQ27) Probable Rab-related GTPase| Length = 215 Score = 28.1 bits (61), Expect = 8.8 Identities = 13/50 (26%), Positives = 27/50 (54%) Frame = +2 Query: 224 SASTGVMNSLLGKLATLMGEEFAKLKNLRKEVKYISDELSSMKDALESLA 373 S + +N+L GK+ M E + R ++ Y+SD+ S + D ++ ++ Sbjct: 159 SFESDTVNNLFGKMIDKMSEIKINPDSRRNDIIYLSDKSSGIDDFIDKIS 208
>GAL7_NEUCR (Q7RYE7) Galactose-1-phosphate uridylyltransferase (EC 2.7.7.12)| (Gal-1-P uridylyltransferase) (UDP-glucose--hexose-1-phosphate uridylyltransferase) Length = 392 Score = 28.1 bits (61), Expect = 8.8 Identities = 16/50 (32%), Positives = 21/50 (42%) Frame = -1 Query: 243 ITPVEALTIIPVISGWTSIYLCSLVIHAMHLSRLLKQWSSSMQFPDGEVD 94 + + A I+PVI WT IY L + S PDGEV+ Sbjct: 130 LADMSATEIVPVIETWTRIYASHLSASHPLRDAAARSLSEIPPNPDGEVE 179
>BRO1_ASPFU (Q4X0Z5) Vacuolar protein-sorting protein bro1 (BRO| domain-containing protein 1) Length = 976 Score = 28.1 bits (61), Expect = 8.8 Identities = 16/42 (38%), Positives = 21/42 (50%) Frame = -2 Query: 317 PPSSSSLAWRTPPPSGWPAYPGESSLPRLKRSPLFQSSLAGQ 192 P ++ S A PPP P YPG + + SP F +AGQ Sbjct: 784 PSTAPSKAKSPPPPVKAPGYPG-PGIASPQMSPHFAPGVAGQ 824
>ATG11_CANGA (Q6FRH2) Autophagy-related protein 11| Length = 1110 Score = 28.1 bits (61), Expect = 8.8 Identities = 12/39 (30%), Positives = 27/39 (69%) Frame = +2 Query: 263 LATLMGEEFAKLKNLRKEVKYISDELSSMKDALESLADV 379 L +L G+ +KLK ++KE+ +D+ S+++ +E+L ++ Sbjct: 259 LKSLDGKVNSKLKQIKKELDSYADQRKSIQNEIENLKNI 297
>ABCA2_RAT (Q9ESR9) ATP-binding cassette sub-family A member 2 (ATP-binding| cassette transporter 2) (ATP-binding cassette 2) Length = 2434 Score = 28.1 bits (61), Expect = 8.8 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%) Frame = -2 Query: 317 PPSSSSLAWRT--PPPSGWPAYPGESSLPRLKRSPL 216 P S LAW T PP +G + SLPRL P+ Sbjct: 1604 PDEDSLLAWNTSLPPTAGPETWTWAPSLPRLVHEPV 1639
>ENH1_PANTR (P61559) ERV-H1 provirus ancestral Env polyprotein precursor| (Envelope polyprotein) (Env protein) (ERV-H/env62) [Contains: Surface protein (SU); Transmembrane protein (TM)] Length = 457 Score = 28.1 bits (61), Expect = 8.8 Identities = 20/70 (28%), Positives = 39/70 (55%) Frame = +2 Query: 170 TREQR*ILVQPEMTGIMVSASTGVMNSLLGKLATLMGEEFAKLKNLRKEVKYISDELSSM 349 TR++R I + P M G+ +SAST +++ + ++T + + + + IS LS + Sbjct: 383 TRQKRVIPLIPLMFGLGLSASTIALSTGIAGISTSVMTFRSLSNDFSASITDISQTLSVL 442 Query: 350 KDALESLADV 379 + ++SLA V Sbjct: 443 QAQVDSLAAV 452 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,125,673 Number of Sequences: 219361 Number of extensions: 1055228 Number of successful extensions: 4380 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 4072 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4368 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
