ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl43a06 |
|---|---|
| Clone Library Name | barley_pub |
>IBP3_HUMAN (P17936) Insulin-like growth factor-binding protein 3 precursor| (IGFBP-3) (IBP-3) (IGF-binding protein 3) Length = 291 Score = 32.3 bits (72), Expect = 0.30 Identities = 27/80 (33%), Positives = 31/80 (38%), Gaps = 18/80 (22%) Frame = +1 Query: 145 CPARPLVWRGPPAERCRDPARSGGAG--WTC------------RRCSSGRRTPLAPS*AA 282 C AR L PP C + R G G TC RC SG R +P A Sbjct: 43 CDARALAQCAPPPAVCAELVREPGCGCCLTCALSEGQPCGIYTERCGSGLRCQPSPD-EA 101 Query: 283 RPLQ----GRSWCLTVRATT 330 RPLQ GR C+ A + Sbjct: 102 RPLQALLDGRGLCVNASAVS 121
>CELR1_HUMAN (Q9NYQ6) Cadherin EGF LAG seven-pass G-type receptor 1 precursor| (Flamingo homolog 2) (hFmi2) Length = 3014 Score = 31.6 bits (70), Expect = 0.51 Identities = 23/79 (29%), Positives = 29/79 (36%) Frame = +3 Query: 51 GFRAAALRPAC*VRSGRPTRSLAAREMATFAVSGATLGVARAAGGALPRSGSERRGGLDL 230 G RA ALRP C G A RE+ G G R +G P R Sbjct: 38 GTRAFALRPGCTYAVGAACTPRAPRELLDVGRDGRLAGRRRVSGAGRPLPLQVRLVARSA 97 Query: 231 PSLLLRKKDSSRAVLSCAA 287 P+ L R+ + + C A Sbjct: 98 PTALSRRLRARTHLPGCGA 116
>RNPA_THEAQ (Q7X5L4) Ribonuclease P protein component (EC 3.1.26.5) (RNaseP| protein) (RNase P protein) (Protein C5) Length = 162 Score = 31.6 bits (70), Expect = 0.51 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 4/67 (5%) Frame = -3 Query: 335 GQVVALTVRHQDLPWSGRAAQDGARGVLLPEEQRRQVQPAPPLRAGSRQRSAGGPRH--- 165 GQ L H+D RA +G L P+ Q +++ PP +AG R S G R Sbjct: 14 GQDPRLPGPHEDPRRQERAEAQAKKGPLAPDAQGKRLGQGPP-KAGGRLLSLKGDRAFQR 72 Query: 164 -TKGRAG 147 KGRAG Sbjct: 73 LRKGRAG 79
>UBP42_HUMAN (Q9H9J4) Ubiquitin carboxyl-terminal hydrolase 42 (EC 3.1.2.15)| (Ubiquitin thioesterase 42) (Ubiquitin-specific-processing protease 42) (Deubiquitinating enzyme 42) Length = 1325 Score = 30.8 bits (68), Expect = 0.87 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = -3 Query: 248 PEEQRRQVQPAPPLRAGSRQRSAGGPRHTKGRAGHRERRH 129 P E+ RQ + AP G R + G R + GR H RH Sbjct: 985 PRERDRQDRHAPEHHPGHGDRLSPGERRSLGRCSHHHSRH 1024
>NU124_SCHPO (Q09904) Nucleoporin nup124 (Nuclear pore protein nup124)| Length = 1159 Score = 30.4 bits (67), Expect = 1.1 Identities = 16/42 (38%), Positives = 21/42 (50%) Frame = -2 Query: 153 RRTPRTSPSPAQRASESVAQISLNTPAEVQQRGTRGRPSEGS 28 +R P SPSP +SVA+ S N P+ Q + G S S Sbjct: 203 KRKPSRSPSPMLSKKKSVARASENEPSAKQNKSFSGNDSHKS 244
>VPS54_YEAST (Q12071) Vacuolar protein sorting protein 54 (CPF1 genetically| interacting protein 1) (Temperature-sensitive clathrin synthetic mutation protein 3) Length = 889 Score = 30.4 bits (67), Expect = 1.1 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 3/84 (3%) Frame = +3 Query: 30 SPHSVGLGFRAAALRPAC*VRSGRPTRSLAAREMATFAVSGATL---GVARAAGGALPRS 200 +PH+ G + AA RP V G P+R+ + +F + G T + +G PR Sbjct: 6 TPHNKSQGLQKAAGRPKIVVPEGSPSRN---SDSGSFTIEGDTSLNDDLLSISGSVTPR- 61 Query: 201 GSERRGGLDLPSLLLRKKDSSRAV 272 + R L L S+ R+ SR + Sbjct: 62 -ARRSSRLSLDSITPRRSFDSRTL 84
>ATPD_SORBI (Q07300) ATP synthase delta chain, chloroplast precursor (EC| 3.6.3.14) Length = 247 Score = 30.4 bits (67), Expect = 1.1 Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 12/80 (15%) Frame = +3 Query: 114 LAAREMATFAVSGATLGVARAAGGALP---RSGSERRGGLDLPSLLL----RKKDSSR-- 266 +AA +A+F + A A A+ GA P RS S R LPSL L R+ D R Sbjct: 1 MAALRLASFTLRPAAAAAASASSGATPAAPRSASFARAARGLPSLRLAPPRRRGDLVRPR 60 Query: 267 ---AVLSCAAAPGKVLVPDG 317 A S A+A +V V +G Sbjct: 61 AEAAADSYASALSEVAVENG 80
>HME1_HUMAN (Q05925) Homeobox protein engrailed-1 (Hu-En-1)| Length = 392 Score = 30.0 bits (66), Expect = 1.5 Identities = 24/96 (25%), Positives = 34/96 (35%) Frame = -1 Query: 337 AAKSSLSPSGTRTFPGAAAQLRTAREESFFLRSSDGKSSPPLRSEPDRGSXXXXXXXXXX 158 A + + P GTR PGAA+ L + D PP S+P Sbjct: 151 AGRDPVHPLGTRA-PGAAS----------LLCAPDANCGPPDGSQPAAAGAGASKAGNPA 199 Query: 157 XXXXXANVAISRAASERVGRPDLTQHAGRSAAARNP 50 A A++ AA+ +P T G A +P Sbjct: 200 AAAAAAAAAVAAAAAAAAAKPSDTGGGGSGGGAGSP 235
>TCOF_HUMAN (Q13428) Treacle protein (Treacher Collins syndrome protein)| Length = 1411 Score = 29.6 bits (65), Expect = 1.9 Identities = 18/51 (35%), Positives = 23/51 (45%) Frame = -3 Query: 290 SGRAAQDGARGVLLPEEQRRQVQPAPPLRAGSRQRSAGGPRHTKGRAGHRE 138 SG+ +Q GA E R+ PAPP + GP K +AG RE Sbjct: 288 SGKTSQVGAASAPAKESPRKGAAPAPPGKT--------GPAVAKAQAGKRE 330
>SYA_SILPO (Q5LRU1) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 890 Score = 29.3 bits (64), Expect = 2.5 Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 4/76 (5%) Frame = +3 Query: 123 REMATFAVSGATLGVARAAGGALPRSGSERRG--GLDLPSLLLRKKD--SSRAVLSCAAA 290 R++A +G G G +P G G DLP+L+ K S AVL A A Sbjct: 765 RDLAMAGGAGQGGGAETHEVGGVPFLAQVLSGVSGKDLPALIDEHKSRMGSGAVLLIADA 824 Query: 291 PGKVLVPDGESDDLAA 338 GK V G ++DL A Sbjct: 825 GGKAAVAAGVTEDLTA 840
>PSBQ_ONOVI (O22591) Oxygen-evolving enhancer protein 3, chloroplast precursor| (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) Length = 231 Score = 29.3 bits (64), Expect = 2.5 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = -3 Query: 287 GRAAQDGARGVLLPEEQRRQVQPAPPLRAGSRQRSA 180 G D AR + LP ++R +QP P A RQR + Sbjct: 101 GTLNSDEARDLKLPLKERFYIQPLSPTEAAQRQRES 136
>PATR_LEIXX (Q6ABX6) Putative phenylalanine aminotransferase (EC 2.6.1.-)| Length = 361 Score = 28.9 bits (63), Expect = 3.3 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +3 Query: 162 GVARAAGGALPRSGSERRGGLDLPSLLLRKKDSSRAVLSC 281 G+A AG + + GG DLP+L D +RAV+ C Sbjct: 112 GLATVAGATSVQVPNRADGGHDLPALAAAITDRTRAVIVC 151
>LEUK_RAT (P13838) Leukosialin precursor (Leucocyte sialoglycoprotein)| (Sialophorin) (W3/13 antigen) (CD43 antigen) (Fragment) Length = 378 Score = 28.9 bits (63), Expect = 3.3 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = -1 Query: 331 KSSLSPSGTRTFPGAAAQLRTAREESFFLRSSDGKSSPPL 212 K S+SP G T P ++ L T SFF S+ + P+ Sbjct: 48 KESISPWGQTTAPASSIPLGTPELSSFFFTSAGASGNTPV 87
>3BP1_HUMAN (Q9Y3L3) SH3 domain-binding protein 1 (3BP-1)| Length = 701 Score = 28.9 bits (63), Expect = 3.3 Identities = 15/30 (50%), Positives = 20/30 (66%) Frame = -2 Query: 156 SRRTPRTSPSPAQRASESVAQISLNTPAEV 67 SRR+P SPSPA S + +SL+ PA+V Sbjct: 635 SRRSP-ASPSPASPGPASPSPVSLSNPAQV 663
>HLX1_HUMAN (Q14774) Homeobox protein HLX1 (Homeobox protein HB24)| Length = 488 Score = 28.9 bits (63), Expect = 3.3 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = -3 Query: 245 EEQRRQVQPAPPLRAGSRQRSAGGPR 168 ++Q +Q QP PP RAG+ Q A G R Sbjct: 130 QQQPQQQQPPPPPRAGALQPPASGTR 155
>PDXJ_PSEU2 (Q4ZPE4) Pyridoxal phosphate biosynthetic protein pdxJ (PNP| synthase) Length = 246 Score = 28.5 bits (62), Expect = 4.3 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = -1 Query: 121 AASERVGRPDLTQHAGRSAAARNP 50 AAS+RVG P + H GR A A+ P Sbjct: 145 AASKRVGAPAIELHTGRYADAQTP 168
>PDXJ_PSE14 (Q48EV6) Pyridoxal phosphate biosynthetic protein pdxJ (PNP| synthase) Length = 246 Score = 28.5 bits (62), Expect = 4.3 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = -1 Query: 121 AASERVGRPDLTQHAGRSAAARNP 50 AAS+RVG P + H GR A A+ P Sbjct: 145 AASKRVGAPAIELHTGRYADAQTP 168
>LTBP1_RAT (Q00918) Latent transforming growth factor beta-binding protein 1| precursor (LTBP-1) (Transforming growth factor beta-1-binding protein 1) (TGF-beta-1-BP-1) (Transforming growth factor beta-1-masking protein, large subunit) Length = 1712 Score = 28.5 bits (62), Expect = 4.3 Identities = 18/39 (46%), Positives = 21/39 (53%) Frame = +1 Query: 172 GPPAERCRDPARSGGAGWTCRRCSSGRRTPLAPS*AARP 288 GPPAER R ++ GGA G R+PL P ARP Sbjct: 74 GPPAERTRRTSQPGGA------ALPGLRSPLPPE-PARP 105
>IF2_GLOVI (Q7NH85) Translation initiation factor IF-2| Length = 925 Score = 28.5 bits (62), Expect = 4.3 Identities = 16/42 (38%), Positives = 19/42 (45%) Frame = -3 Query: 248 PEEQRRQVQPAPPLRAGSRQRSAGGPRHTKGRAGHRERRHLP 123 P E RR P PP + SR GGP R G + R +P Sbjct: 244 PSEPRR---PQPPAQPPSRPEKRGGPLIAPNRGGLQPTRPVP 282
>V120_EBV (P03189) Capsid assembly protein BOLF1| Length = 1239 Score = 28.5 bits (62), Expect = 4.3 Identities = 11/15 (73%), Positives = 15/15 (100%) Frame = -2 Query: 153 RRTPRTSPSPAQRAS 109 RR+PRT+PSP++RAS Sbjct: 1177 RRSPRTTPSPSRRAS 1191
>LPHN1_BOVIN (O97831) Latrophilin-1 precursor (Calcium-independent| alpha-latrotoxin receptor 1) Length = 1472 Score = 28.5 bits (62), Expect = 4.3 Identities = 15/38 (39%), Positives = 18/38 (47%) Frame = -3 Query: 284 RAAQDGARGVLLPEEQRRQVQPAPPLRAGSRQRSAGGP 171 R GA+G PE P PP+ GS + AGGP Sbjct: 1293 RGGSSGAKGPPPPEP------PVPPVPGGSGEEEAGGP 1324
>GLGB_MAIZE (Q08047) 1,4-alpha-glucan branching enzyme IIB, chloroplast| precursor (EC 2.4.1.18) (Starch branching enzyme IIB) (Q-enzyme) Length = 799 Score = 28.5 bits (62), Expect = 4.3 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 4/71 (5%) Frame = +3 Query: 138 FAVSGATLGVA----RAAGGALPRSGSERRGGLDLPSLLLRKKDSSRAVLSCAAAPGKVL 305 F VSGA LG A R GG G + + A+ + AAA V+ Sbjct: 3 FRVSGAVLGGAVRAPRLTGGGEGSLVFRHTGLFLTRGARVGCSGTHGAMRAAAAARKAVM 62 Query: 306 VPDGESDDLAA 338 VP+GE+D LA+ Sbjct: 63 VPEGENDGLAS 73
>LTB1L_MOUSE (Q8CG19) Latent transforming growth factor beta-binding protein,| isoform 1L precursor (LTBP-1) (Transforming growth factor beta-1-binding protein 1) (TGF-beta1-BP-1) Length = 1713 Score = 28.5 bits (62), Expect = 4.3 Identities = 18/39 (46%), Positives = 21/39 (53%) Frame = +1 Query: 172 GPPAERCRDPARSGGAGWTCRRCSSGRRTPLAPS*AARP 288 GPPAER R ++ GGA G R+PL P ARP Sbjct: 74 GPPAERTRRTSQPGGA------ALPGLRSPLPPE-PARP 105
>PDXJ_PSESM (Q87XG4) Pyridoxal phosphate biosynthetic protein pdxJ (PNP| synthase) Length = 246 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = -1 Query: 121 AASERVGRPDLTQHAGRSAAARNP 50 AAS+RVG P + H GR A A+ P Sbjct: 145 AASKRVGAPAVELHTGRYADAQTP 168
>NET2_CHICK (Q90923) Netrin-2 precursor (Fragment)| Length = 581 Score = 28.1 bits (61), Expect = 5.6 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 3/27 (11%) Frame = +1 Query: 199 PARSGGAGWTCRRCSSG---RRTPLAP 270 P + G G TC RC+ G R+P+AP Sbjct: 401 PCKDGVTGLTCNRCAKGFQQSRSPVAP 427
>KITH_HALSA (Q9HPQ9) Thymidine kinase (EC 2.7.1.21)| Length = 195 Score = 28.1 bits (61), Expect = 5.6 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = -1 Query: 133 AISRAASERVGRPDLTQHAGRSAAARNPRPTE*G 32 A++ A +R G L HAGRS AA PT G Sbjct: 41 AVTPAVDDRYGEATLGSHAGRSWAATVVEPTAEG 74
>PDXJ_PSEPF (Q3KHL6) Pyridoxal phosphate biosynthetic protein pdxJ (PNP| synthase) Length = 247 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = -1 Query: 121 AASERVGRPDLTQHAGRSAAARNP 50 AAS+RVG P + H GR A A P Sbjct: 145 AASKRVGAPAIELHTGRYADAETP 168
>NET1_CHICK (Q90922) Netrin-1 precursor| Length = 606 Score = 28.1 bits (61), Expect = 5.6 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 3/27 (11%) Frame = +1 Query: 199 PARSGGAGWTCRRCSSG---RRTPLAP 270 P + G G TC RC+ G R+P+AP Sbjct: 426 PCKDGVTGITCNRCAKGYQQSRSPIAP 452
>CCAR1_XENLA (Q641G3) Cell division cycle and apoptosis regulator protein 1| Length = 1157 Score = 28.1 bits (61), Expect = 5.6 Identities = 16/41 (39%), Positives = 23/41 (56%) Frame = -3 Query: 245 EEQRRQVQPAPPLRAGSRQRSAGGPRHTKGRAGHRERRHLP 123 E +RR+ + P R SR+RS PR + R+ R RR +P Sbjct: 330 ERERRRSRDRSPQRKRSRERS---PRRERERSPRRPRRVVP 367
>SMO_CHICK (O42224) Smoothened homolog precursor (SMO) (Fragment)| Length = 794 Score = 28.1 bits (61), Expect = 5.6 Identities = 12/20 (60%), Positives = 12/20 (60%) Frame = +1 Query: 145 CPARPLVWRGPPAERCRDPA 204 CPA PL P ERCR PA Sbjct: 19 CPAAPLNASAAPPERCRRPA 38
>NET1_MOUSE (O09118) Netrin-1 precursor| Length = 604 Score = 28.1 bits (61), Expect = 5.6 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 3/27 (11%) Frame = +1 Query: 199 PARSGGAGWTCRRCSSG---RRTPLAP 270 P + G G TC RC+ G R+P+AP Sbjct: 424 PCKDGVTGITCNRCAKGYQQSRSPIAP 450
>NET1_HUMAN (O95631) Netrin-1 precursor| Length = 604 Score = 28.1 bits (61), Expect = 5.6 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 3/27 (11%) Frame = +1 Query: 199 PARSGGAGWTCRRCSSG---RRTPLAP 270 P + G G TC RC+ G R+P+AP Sbjct: 424 PCKDGVTGITCNRCAKGYQQSRSPIAP 450
>CCAR1_HUMAN (Q8IX12) Cell division cycle and apoptosis regulator protein 1| (Cell cycle and apoptosis regulatory protein 1) (CARP-1) (Death inducer with SAP domain) Length = 1150 Score = 27.7 bits (60), Expect = 7.4 Identities = 16/41 (39%), Positives = 23/41 (56%) Frame = -3 Query: 245 EEQRRQVQPAPPLRAGSRQRSAGGPRHTKGRAGHRERRHLP 123 E +RR+ + P R SR+RS PR + R+ R RR +P Sbjct: 323 ERERRRSRERSPQRKRSRERS---PRRERERSPRRVRRVVP 360
>NMDE4_HUMAN (O15399) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) (EB11) Length = 1336 Score = 27.7 bits (60), Expect = 7.4 Identities = 10/16 (62%), Positives = 11/16 (68%) Frame = +1 Query: 199 PARSGGAGWTCRRCSS 246 P RSG A W CR C+S Sbjct: 1170 PPRSGPAAWHCRHCAS 1185
>NET2_MOUSE (Q9R1A3) Netrin-2-like protein precursor (Netrin-3)| Length = 580 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 3/27 (11%) Frame = +1 Query: 199 PARSGGAGWTCRRCSSG---RRTPLAP 270 P + G G TC RC+ G R+P+AP Sbjct: 394 PCKDGVTGLTCNRCAPGFQQSRSPVAP 420
>NET2_HUMAN (O00634) Netrin-2-like protein precursor| Length = 580 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 3/27 (11%) Frame = +1 Query: 199 PARSGGAGWTCRRCSSG---RRTPLAP 270 P + G G TC RC+ G R+P+AP Sbjct: 394 PCKDGVTGLTCNRCAPGFQQSRSPVAP 420
>K1543_MOUSE (Q80VC9) Protein KIAA1543| Length = 1252 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -1 Query: 268 AREESFFLRSSDGKSSPPLRSEPDRGS 188 A + SF+L S +G S PPL P G+ Sbjct: 480 AADGSFYLHSPEGLSKPPLSPYPPEGA 506
>LAP2_RAT (Q62733) Lamina-associated polypeptide 2 isoform beta (Thymopoietin| isoform beta) (TP beta) Length = 451 Score = 27.3 bits (59), Expect = 9.6 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = -2 Query: 162 QGSRRTPRTSPSPAQRASESVAQISLNTP 76 +GSRRTPR P+Q A IS +TP Sbjct: 250 RGSRRTPRRRVEPSQHFRVDGAVISESTP 278
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 27.3 bits (59), Expect = 9.6 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%) Frame = -3 Query: 245 EEQRRQVQPAPPLRAGSRQRSAG-GPRHTKGRAGHRER 135 E+++ + + P R+ SR RS P H++ R HR R Sbjct: 269 EKEKEKTRQRSPTRSKSRSRSRSRSPSHSRPRRRHRSR 306
>MRP5_RAT (Q9QYM0) Multidrug resistance-associated protein 5| Length = 1436 Score = 27.3 bits (59), Expect = 9.6 Identities = 16/28 (57%), Positives = 17/28 (60%) Frame = +3 Query: 225 DLPSLLLRKKDSSRAVLSCAAAPGKVLV 308 D PS+LL DSSR CAAA KV V Sbjct: 1408 DTPSVLL-SNDSSRFYAMCAAAENKVAV 1434
>HR4_DROME (Q9W539) Hormone receptor 4 (dHR4)| Length = 1518 Score = 27.3 bits (59), Expect = 9.6 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = -2 Query: 132 PSPAQRASESVAQISLNTPAEVQQRGT 52 PSP +S S +Q+S TP++ RGT Sbjct: 686 PSPHPSSSSSSSQLSPQTPSQTPPRGT 712
>FOXGA_HUMAN (P55316) Forkhead box protein G1A (Forkhead-related protein FKHL2)| (Transcription factor BF-2) (Brain factor 2) (BF2) (HFK2) Length = 469 Score = 27.3 bits (59), Expect = 9.6 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -3 Query: 248 PEEQRRQVQPAPPLRAGSRQRSAGGP 171 P +Q QP PP R G+R+R GP Sbjct: 65 PPPPPQQQQPPPPPRRGARRRRRRGP 90 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,792,046 Number of Sequences: 219361 Number of extensions: 841892 Number of successful extensions: 3734 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 3518 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3731 length of database: 80,573,946 effective HSP length: 89 effective length of database: 61,050,817 effective search space used: 1465219608 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
