ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl43a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC132292.3| Mus musculus BAC clone RP24-319L4 from chromosome... 44 0.24
2gb|AC155173.3| Mus musculus BAC clone RP23-72O23 from chromosome... 44 0.24
3emb|AL590708.18| Human DNA sequence from clone RP11-395P17 on ch... 42 0.94
4ref|XM_466713.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.7
5ref|XM_466714.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.7
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
7dbj|AP005300.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
8dbj|AK070784.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.7
9dbj|AK069606.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.7
10dbj|AP003087.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 3.7
11emb|X98485.1|PV14GENE P.vivax PV14 gene 40 3.7

>gb|AC132292.3| Mus musculus BAC clone RP24-319L4 from chromosome 5, complete sequence
          Length = 160517

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 11     cattgtcatcccacccccaggg 32
              ||||||||||||||||||||||
Sbjct: 105972 cattgtcatcccacccccaggg 105993



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>gb|AC155173.3| Mus musculus BAC clone RP23-72O23 from chromosome 5, complete sequence
          Length = 245443

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 11     cattgtcatcccacccccaggg 32
              ||||||||||||||||||||||
Sbjct: 175552 cattgtcatcccacccccaggg 175573



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>emb|AL590708.18| Human DNA sequence from clone RP11-395P17 on chromosome 9 Contains the
             PCSCL gene for likely ortholog of rat peroxisomal
             Ca-dependent solute carrier-like protein (KIAA1896), the
             PTGES2 gene for prostaglandin E synthase 2 (GBF1, GBF-1,
             C9orf15, FLJ14038), the LCN2 gene for lipocalin 2
             (oncogene 24p3) (NGAL), the C9orf16 gene for chromosome 9
             open reading frame 16 (MGC4639, EST00098, FLJ12823), the
             CIZ1 gene for Cip1-interacting zinc finger protein
             (LSFR1), the DNM1 gene for dynamin 1 (DNM), the GOLGA2
             gene for golgi autoantigen, golgin subfamily a, 2 (GM130,
             MGC20672), the gene for a novel protein and seven CpG
             islands, complete sequence
          Length = 194056

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 25    ccccagggaagcaaagccacc 45
             |||||||||||||||||||||
Sbjct: 32570 ccccagggaagcaaagccacc 32590



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>ref|XM_466713.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1065

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 70  tgctggtggagtcccgcgaa 89
           ||||||||||||||||||||
Sbjct: 768 tgctggtggagtcccgcgaa 787



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>ref|XM_466714.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1038

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 70  tgctggtggagtcccgcgaa 89
           ||||||||||||||||||||
Sbjct: 693 tgctggtggagtcccgcgaa 712



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 70       tgctggtggagtcccgcgaa 89
                ||||||||||||||||||||
Sbjct: 24247659 tgctggtggagtcccgcgaa 24247678



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>dbj|AP005300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ2055_H10
          Length = 119290

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    tgctggtggagtcccgcgaa 89
             ||||||||||||||||||||
Sbjct: 48047 tgctggtggagtcccgcgaa 48066



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>dbj|AK070784.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064G04, full
           insert sequence
          Length = 1038

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 70  tgctggtggagtcccgcgaa 89
           ||||||||||||||||||||
Sbjct: 693 tgctggtggagtcccgcgaa 712



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>dbj|AK069606.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023024J22, full
           insert sequence
          Length = 1065

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 70  tgctggtggagtcccgcgaa 89
           ||||||||||||||||||||
Sbjct: 768 tgctggtggagtcccgcgaa 787



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>dbj|AP003087.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-594014, complete
             sequences
          Length = 100403

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 171   aagaagaaggacatggctga 190
             ||||||||||||||||||||
Sbjct: 88455 aagaagaaggacatggctga 88474



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>emb|X98485.1|PV14GENE P.vivax PV14 gene
          Length = 2554

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 171  aagaagaaggacatggctga 190
            ||||||||||||||||||||
Sbjct: 2499 aagaagaaggacatggctga 2518


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,809,103
Number of Sequences: 3902068
Number of extensions: 2809103
Number of successful extensions: 51545
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51520
Number of HSP's gapped (non-prelim): 25
length of query: 284
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 262
effective length of database: 17,147,199,772
effective search space: 4492566340264
effective search space used: 4492566340264
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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