ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl42h12 |
|---|---|
| Clone Library Name | barley_pub |
>COPG2_MOUSE (Q9QXK3) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 50.4 bits (119), Expect = 1e-06 Identities = 21/39 (53%), Positives = 31/39 (79%) Frame = +3 Query: 270 SPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLL 386 +PF +EK AVLQEAR+F++ ++ RRC ++TK+LYLL Sbjct: 17 NPFQHLEKSAVLQEARIFNETPINPRRCLHILTKILYLL 55
>COPG2_HUMAN (Q9UBF2) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 50.4 bits (119), Expect = 1e-06 Identities = 21/39 (53%), Positives = 31/39 (79%) Frame = +3 Query: 270 SPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLL 386 +PF +EK AVLQEAR+F++ ++ RRC ++TK+LYLL Sbjct: 17 NPFQHLEKSAVLQEARIFNETPINPRRCLHILTKILYLL 55
>COPG_HUMAN (Q9Y678) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 49.3 bits (116), Expect = 2e-06 Identities = 20/39 (51%), Positives = 31/39 (79%) Frame = +3 Query: 270 SPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLL 386 +PF +EK AVLQEARVF++ ++ R+C ++TK+LYL+ Sbjct: 17 NPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLI 55
>COPG_BOVIN (P53620) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 49.3 bits (116), Expect = 2e-06 Identities = 20/39 (51%), Positives = 31/39 (79%) Frame = +3 Query: 270 SPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLL 386 +PF +EK AVLQEARVF++ ++ R+C ++TK+LYL+ Sbjct: 17 NPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLI 55
>COPG_CAEEL (Q22498) Probable coatomer subunit gamma (Gamma-coat protein)| (Gamma-COP) Length = 870 Score = 42.7 bits (99), Expect = 2e-04 Identities = 15/34 (44%), Positives = 29/34 (85%) Frame = +3 Query: 285 IEKGAVLQEARVFHDPQLDARRCCQVITKLLYLL 386 ++K +VLQEAR F++ ++AR+CC +++KL+Y++ Sbjct: 18 LDKTSVLQEARAFNETPINARKCCFILSKLIYII 51
>ICP0_EHV1V (P84445) Trans-acting transcriptional protein ICP0 (Infected cell| protein 0) Length = 532 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/29 (48%), Positives = 15/29 (51%) Frame = +1 Query: 79 SSLAKPRDKDSRELSRRPAPPPFSRHSGR 165 SS PR +DSR RP PP R GR Sbjct: 247 SSAQAPRQEDSRPARARPGPPTRGRRRGR 275
>ICP0_EHV1B (P28990) Trans-acting transcriptional protein ICP0| Length = 532 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/29 (48%), Positives = 15/29 (51%) Frame = +1 Query: 79 SSLAKPRDKDSRELSRRPAPPPFSRHSGR 165 SS PR +DSR RP PP R GR Sbjct: 247 SSAQAPRQEDSRPARARPGPPTRGRRRGR 275
>MTB1_BRUAB (P0C116) Modification methylase BabI (EC 2.1.1.72)| (Adenine-specific methyltransferase BabI) (M.BabI) (M.CcrMI) Length = 377 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = -3 Query: 353 ASPRIKLRVVEDAGLLQDGTLLDAEERR 270 A PR+ V +AGLL+ GT+L E RR Sbjct: 284 AEPRVAFTSVMEAGLLRPGTVLCDERRR 311
>MTB1_BRUA2 (Q2YMK2) Modification methylase BabI (EC 2.1.1.72)| (Adenine-specific methyltransferase BabI) (M.BabI) (M.CcrMI) Length = 377 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = -3 Query: 353 ASPRIKLRVVEDAGLLQDGTLLDAEERR 270 A PR+ V +AGLL+ GT+L E RR Sbjct: 284 AEPRVAFTSVMEAGLLRPGTVLCDERRR 311
>ST32C_HUMAN (Q86UX6) Serine/threonine-protein kinase 32C (EC 2.7.11.1) (PKE)| (YANK3) Length = 486 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/37 (40%), Positives = 18/37 (48%) Frame = +1 Query: 103 KDSRELSRRPAPPPFSRHSGRPGRTIRARIAPPQQGP 213 K S++L R P P P SR + P R A P GP Sbjct: 442 KRSQDLPREPLPAPESRDAAEPVEDEAERSALPMCGP 478
>VE4_HPV08 (P06425) Probable protein E4| Length = 229 Score = 28.1 bits (61), Expect = 5.3 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 3/51 (5%) Frame = +1 Query: 70 PVQSSLAKPRDKDSRELSRRPAPPPFSRHSGRPGRTIRARIAP---PQQGP 213 P+Q+S KP+ KD RPA + G GR +AP P GP Sbjct: 46 PLQNSHNKPKPKDEGTGDGRPAEQDRKKSRGDQGRDTAPGLAPGRSPGLGP 96
>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = +1 Query: 82 SLAKPRDKDSRELSRR-PAPPPFSRHSGRPGRTI 180 S +KP +D +E RR P+P P H GR R + Sbjct: 139 SKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNV 172
>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = +1 Query: 82 SLAKPRDKDSRELSRR-PAPPPFSRHSGRPGRTI 180 S +KP +D +E RR P+P P H GR R + Sbjct: 139 SKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNV 172
>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = +1 Query: 82 SLAKPRDKDSRELSRR-PAPPPFSRHSGRPGRTI 180 S +KP +D +E RR P+P P H GR R + Sbjct: 139 SKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNV 172
>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = +1 Query: 82 SLAKPRDKDSRELSRR-PAPPPFSRHSGRPGRTI 180 S +KP +D +E RR P+P P H GR R + Sbjct: 139 SKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNV 172
>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related| protein LDC2) Length = 305 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = +1 Query: 82 SLAKPRDKDSRELSRR-PAPPPFSRHSGRPGRTI 180 S +KP +D +E RR P+P P H GR R + Sbjct: 139 SKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNV 172
>CWC22_CRYNE (Q5KFX4) Pre-mRNA-splicing factor CWC22| Length = 831 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%) Frame = +1 Query: 94 PRDKDSRELSRRPAPPPFSRHSG---RPGRTIRARIAPPQQGP 213 PR + + SR P+PPP R+SG P R R A + P Sbjct: 750 PRRRRYSDDSRSPSPPPRRRYSGDSRSPSPPPRRRYADDSRSP 792
>AIM1_HUMAN (Q9Y4K1) Absent in melanoma 1 protein| Length = 1723 Score = 27.3 bits (59), Expect = 9.1 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 10/55 (18%) Frame = +1 Query: 79 SSLAKPRDKDSR--------ELSRRPAPPPFSRHSGRPGRT--IRARIAPPQQGP 213 +S A P K S E R PPP S + R GR+ + A APP GP Sbjct: 71 ASAASPESKPSPGTKGQLRGESDRSKQPPPASSPTKRKGRSRALEAVPAPPASGP 125
>GRIN1_HUMAN (Q7Z2K8) G protein-regulated inducer of neurite outgrowth 1 (GRIN1)| Length = 1008 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = +1 Query: 133 APPPFSRHSGRPGRTIRARIAPPQ 204 APP F RPG + A +APP+ Sbjct: 882 APPAFPEVRVRPGSALAAAVAPPE 905
>RELA_STRAT (O85709) GTP pyrophosphokinase (EC 2.7.6.5) (ATP:GTP| 3'-pyrophosphotransferase) (ppGpp synthetase I) ((P)ppGpp synthetase) Length = 841 Score = 27.3 bits (59), Expect = 9.1 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 14/56 (25%) Frame = +1 Query: 70 PVQSSLAKPRDKDSRELSRRPA-------PPPFSRHSGRP-------GRTIRARIA 195 PV+ + P DK + +PA PPP +R +G+P +RAR+A Sbjct: 33 PVEHDRSAPADKPAERTRPKPAPPERPRPPPPRARAAGQPAARSGGSSNRVRARLA 88
>IF2_XANC5 (Q3BRP5) Translation initiation factor IF-2| Length = 904 Score = 27.3 bits (59), Expect = 9.1 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 8/54 (14%) Frame = +3 Query: 87 RKTARQGLAGALAP--------PRSAAVLAA*RSTRAHNPRAHRSAAAGAMSQP 224 RK A + A A AP P +AA A S+ + PRA R A A S+P Sbjct: 173 RKAAEEAAAAASAPAPVADAPTPSAAAPAARSPSSPSSAPRAARPAGASPASRP 226
>IF2_XANAC (Q8PJ55) Translation initiation factor IF-2| Length = 904 Score = 27.3 bits (59), Expect = 9.1 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 8/54 (14%) Frame = +3 Query: 87 RKTARQGLAGALAP--------PRSAAVLAA*RSTRAHNPRAHRSAAAGAMSQP 224 RK A + A A AP P +AA A S+ + PRA R A A S+P Sbjct: 173 RKAAEEAAAAASAPAPVADAPKPSAAAPAARLPSSPSSAPRAARPAGASPASRP 226
>ZN335_HUMAN (Q9H4Z2) Zinc finger protein 335| Length = 1342 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -2 Query: 153 PRERRRSGAARELPRVLVSRFCEG 82 PR RRR G R+LPR+ +S +G Sbjct: 345 PRPRRRPGRPRKLPRLEISDLPDG 368
>GELS_DROME (Q07171) Gelsolin precursor| Length = 798 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = +1 Query: 70 PVQSSLAKPRDKDSRELSRRPAPPPFSRHSGRPGRTI 180 PVQS +P ++S++ +RR P F+ PG I Sbjct: 38 PVQSGEIQPSGQNSKQAARRVMHPSFANAGRTPGLEI 74
>CTDP1_HUMAN (Q9Y5B0) RNA polymerase II subunit A C-terminal domain phosphatase| (EC 3.1.3.16) (TFIIF-associating CTD phosphatase) Length = 961 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = +1 Query: 100 DKDSRELSRRPAPPPFSRHSGRPGRTIRARIAPPQQGP 213 +K +REL+ A P R S RPG+ I PP Q P Sbjct: 378 EKPARELNGSEAATP--RDSPRPGKPDERDIWPPAQAP 413
>YIBL_AZOVI (P96194) Putative HTH-type transcriptional regulator in ibpB-leuC| intergenic region Length = 144 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/22 (50%), Positives = 12/22 (54%) Frame = -1 Query: 358 WQHRRASSCGSWKTRASCRTAP 293 W+ ASS W TR SC AP Sbjct: 120 WRWTSASSIRKWPTRRSCTAAP 141 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,474,994 Number of Sequences: 219361 Number of extensions: 549807 Number of successful extensions: 2262 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 2112 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2247 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 1386249648 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
