ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl42h08 |
|---|---|
| Clone Library Name | barley_pub |
>NCBP1_HUMAN (Q09161) Nuclear cap-binding protein subunit 1 (80 kDa nuclear| cap-binding protein) (NCBP 80 kDa subunit) (CBP80) Length = 790 Score = 48.9 bits (115), Expect = 6e-06 Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 1/117 (0%) Frame = +3 Query: 99 TLLLRIGDRCPEYGGTADHKEHIEICYNVLSREYEHSKDDIFEFLLQCAEQLPHKIPFFG 278 +L+ ++G++ + ++E VL + + K I L A LP K+ + Sbjct: 33 SLICKVGEK-----SACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYT 87 Query: 279 VLIGLINLENEDFAKGIVDATQANLQDALHTENRDRIRILLRFLCGLM-CSXVISPN 446 L+GL+N N +F V+A L+++L N + L+RFL L+ C + +P+ Sbjct: 88 TLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAAPS 144
>ZN484_HUMAN (Q5JVG2) Zinc finger protein 484| Length = 852 Score = 32.7 bits (73), Expect = 0.47 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Frame = -3 Query: 306 FLNLSNLSKLQRKESCEVIVRHTEGETQKYHLWSVHIHEKAHC--NRFRCAPCGRLFPR 136 F+ S+L + QR S E ++E E +++IH+K H F C CG+ F R Sbjct: 337 FIQKSDLFRCQRIHSGEKPYEYSECEKNLPQNSNLNIHKKIHTGGKHFECTECGKAFTR 395 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Frame = -3 Query: 309 HFLNLSNLSKLQRKESCEVIVRHTEGETQKYHLWSVHIHEKAHCNR--FRCAPCGRLF 142 HF+ + ++ C + + ++Q +H+H++ H +RCA CG+ F Sbjct: 594 HFITHERIHTGEKPYECSICGKSFTKKSQ------LHVHQQIHTGEKPYRCAECGKAF 645
>ITT1_YEAST (Q04638) Translation termination inhibitor protein ITT1| Length = 464 Score = 30.8 bits (68), Expect = 1.8 Identities = 16/48 (33%), Positives = 21/48 (43%) Frame = -3 Query: 285 SKLQRKESCEVIVRHTEGETQKYHLWSVHIHEKAHCNRFRCAPCGRLF 142 S LQR C+V+V +EG CN+ +C CG LF Sbjct: 397 SNLQRCPKCKVVVERSEG-----------------CNKMKCEVCGTLF 427
>BINCA_HUMAN (Q96LW7) Bcl10-interacting CARD protein (BinCARD)| Length = 228 Score = 30.4 bits (67), Expect = 2.3 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -1 Query: 152 VGCSPVLGAPVADAKQQRPPASAHG 78 V CSP L +P+A A QRPP+ G Sbjct: 135 VCCSPGLASPLASAPPQRPPSGPEG 159
>ODD1_CAEEL (P41995) Zinc finger protein odd-1| Length = 242 Score = 29.6 bits (65), Expect = 4.0 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%) Frame = -3 Query: 288 LSKLQRKES-CEVIVRHTEGETQKYHLWSVHIHEKAHCNR--FRCAPCGRLFPR 136 + K +KE C+ RH T+ Y+L IHE+ H N F C CG+ F R Sbjct: 120 IRKRPKKEFICKYCARHF---TKSYNLM---IHERTHTNERPFHCETCGKSFRR 167
>HUTH2_FUSNN (Q8RDU4) Histidine ammonia-lyase 2 (EC 4.3.1.3) (Histidase 2)| Length = 511 Score = 29.6 bits (65), Expect = 4.0 Identities = 16/51 (31%), Positives = 24/51 (47%) Frame = +3 Query: 201 EHSKDDIFEFLLQCAEQLPHKIPFFGVLIGLINLENEDFAKGIVDATQANL 353 E KD I E E L +K+P +G+ G EN ++ ++ Q NL Sbjct: 31 EKQKDKILESRKYVEEALSNKMPIYGINTGFGKFENVPISEEELELLQKNL 81
>RL40_AERPE (Q9YFY7) 50S ribosomal protein L40e| Length = 50 Score = 29.6 bits (65), Expect = 4.0 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = -3 Query: 204 VHIHEKAHCNRFRCAPCGRLFPRTRGTCRRCEA 106 V I EK N+ C CG L P + CRRC + Sbjct: 9 VAIFEKRVLNKKVCRRCGALNPMSATKCRRCRS 41
>CP4B1_RAT (P15129) Cytochrome P450 4B1 (EC 1.14.14.1) (CYPIVB1) (P450-isozyme| 5) (P450 L-2) Length = 510 Score = 29.6 bits (65), Expect = 4.0 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = +3 Query: 243 AEQLPHKIP-FFGVLIGLINLENEDFAKGI 329 A+Q PH P +FG +G +N+ D+AK + Sbjct: 73 AQQFPHAHPLWFGQFVGFLNIYEPDYAKAV 102
>VGLH_BHV1C (P27599) Glycoprotein H precursor| Length = 842 Score = 29.6 bits (65), Expect = 4.0 Identities = 16/35 (45%), Positives = 20/35 (57%) Frame = -1 Query: 146 CSPVLGAPVADAKQQRPPASAHGGGGGQQRAERDA 42 C+ +L A V A PA+A GG GG+ R RDA Sbjct: 6 CAALLAAAVL-ALAAGAPAAARGGAGGRSREHRDA 39
>SHCBA_XENLA (Q6GPE9) SHC SH2 domain-binding protein 1 homolog A| Length = 699 Score = 29.6 bits (65), Expect = 4.0 Identities = 11/38 (28%), Positives = 21/38 (55%) Frame = +3 Query: 135 YGGTADHKEHIEICYNVLSREYEHSKDDIFEFLLQCAE 248 Y TA EH+ Y + R ++ ++D F++ ++C E Sbjct: 189 YNQTALAIEHLRFFYQQIWRPWDEEEEDYFDYFVRCVE 226
>SHCBB_XENLA (Q640F2) SHC SH2 domain-binding protein 1 homolog B| Length = 698 Score = 29.6 bits (65), Expect = 4.0 Identities = 11/38 (28%), Positives = 21/38 (55%) Frame = +3 Query: 135 YGGTADHKEHIEICYNVLSREYEHSKDDIFEFLLQCAE 248 Y TA EH+ Y + R ++ ++D F++ ++C E Sbjct: 189 YDQTALTIEHVRFFYQQIWRPWDEEEEDYFDYFVRCVE 226
>ZBT17_MOUSE (Q60821) Zinc finger and BTB domain-containing protein 17 (Zinc| finger protein 151) (Zinc finger protein 100) (Zfp-100) (Polyomavirus late initiator promoter-binding protein) (LP-1) (Zinc finger protein Z13) Length = 794 Score = 29.3 bits (64), Expect = 5.2 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%) Frame = -3 Query: 225 QKYHLWSV-HIHEKAHCN--RFRCAPCGRLFPRTRGTCRRCEAAASSSQ 88 + Y L S+ ++H+K H R+RC CG+LF T G +R + S + Sbjct: 360 KSYRLISLLNLHKKRHSGEARYRCGDCGKLF-TTSGNLKRHQLVHSGQK 407
>E2F5_HUMAN (Q15329) Transcription factor E2F5 (E2F-5)| Length = 346 Score = 29.3 bits (64), Expect = 5.2 Identities = 15/37 (40%), Positives = 16/37 (43%) Frame = -1 Query: 149 GCSPVLGAPVADAKQQRPPASAHGGGGGQQRAERDAG 39 G P P A A Q PP G GGG R E+ G Sbjct: 20 GQRPPPQPPQAQAPQPPPPPQLGGAGGGSSRHEKSLG 56
>PROD_CAEEL (O45228) Probable proline oxidase, mitochondrial precursor (EC| 1.5.3.-) (Proline dehydrogenase) Length = 616 Score = 29.3 bits (64), Expect = 5.2 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%) Frame = +3 Query: 117 GDRCPEYGGT-ADHKEHIEICYNVLSREYEHSKD 215 GD Y T A+HK+ +E CYN L +E++K+ Sbjct: 33 GDTGKPYDCTSAEHKKELEECYNRLDLSFENTKE 66
>OR7A_DROME (Q9W3I5) Putative odorant receptor 7a| Length = 413 Score = 29.3 bits (64), Expect = 5.2 Identities = 16/52 (30%), Positives = 26/52 (50%) Frame = +1 Query: 103 CCFASATGAPSTGEQPTTRSTSKSVTMCFLVNMNTPKMIFLSFSFSVPNNYL 258 C +A AP G +PTT ST + + CF V M +++ + F + Y+ Sbjct: 26 CFYALGMQAPD-GSRPTTSSTWQRIYACFSVVMYVWQLLLVPTFFVISYRYM 76
>SMC2_SCHPO (P41003) Structural maintenance of chromosome 2 (Chromosome| segregation protein cut14) (Cell untimely torn protein 14) Length = 1172 Score = 28.9 bits (63), Expect = 6.8 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Frame = +3 Query: 219 IFEF----LLQCAEQLPHKIPFFGVLIGLINLENEDFAKGIVDATQANLQDALHTENRDR 386 IF+F + QC EQL + P F + IN + D G V+ +A L+ + T +RD+ Sbjct: 955 IFDFHSQNMRQCREQLHNLKPRFASMRKAINPKVMDMIDG-VEKKEAKLRSMIKTIHRDK 1013 Query: 387 IRI 395 +I Sbjct: 1014 KKI 1016
>ZBT17_HUMAN (Q13105) Zinc finger and BTB domain-containing protein 17 (Zinc| finger protein 151) (Myc-interacting zinc finger protein) (Miz-1 protein) Length = 803 Score = 28.9 bits (63), Expect = 6.8 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%) Frame = -3 Query: 225 QKYHLWSV-HIHEKAHCN--RFRCAPCGRLFPRTRGTCRRCEAAASSSQ 88 + Y L S+ ++H+K H R+RC CG+LF T G +R + S + Sbjct: 369 KSYRLISLLNLHKKRHSGEARYRCEDCGKLF-TTSGNLKRHQLVHSGEK 416
>HME1_HUMAN (Q05925) Homeobox protein engrailed-1 (Hu-En-1)| Length = 392 Score = 28.9 bits (63), Expect = 6.8 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 5/29 (17%) Frame = -1 Query: 110 KQQRPP-----ASAHGGGGGQQRAERDAG 39 K+Q PP A+A GG GG R ERD G Sbjct: 119 KEQPPPQLLVAAAARGGAGGGGRVERDRG 147
>RAF_MSV36 (P00532) Serine/threonine-protein kinase transforming protein raf| (EC 2.7.11.1) Length = 323 Score = 28.9 bits (63), Expect = 6.8 Identities = 17/64 (26%), Positives = 29/64 (45%) Frame = +3 Query: 186 LSREYEHSKDDIFEFLLQCAEQLPHKIPFFGVLIGLINLENEDFAKGIVDATQANLQDAL 365 LSR Y++ I + C +++ + P F ++ I L K A + +L A Sbjct: 245 LSRLYKNCPKAIKRLVADCVKKVKEERPLFPQILSSIELLQHSLPKINRSAPEPSLHRAA 304 Query: 366 HTEN 377 HTE+ Sbjct: 305 HTED 308
>GCP60_MOUSE (Q8BMP6) Golgi resident protein GCP60 (Acyl-CoA-binding| domain-containing protein 3) (Golgi phosphoprotein 1) (GOLPH1) (Golgi complex-associated protein 1) (GOCAP1) (PBR- and PKA-associated protein 7) (Peripherial benzodiazepine receptor-asso Length = 524 Score = 28.9 bits (63), Expect = 6.8 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 11/48 (22%) Frame = -1 Query: 113 AKQQRPPASAHG-----GGGGQQRAERDA---GCGQEAARIE---GFG 3 A Q PP+SA G G GQQR +A G +EA R+E GFG Sbjct: 31 APPQTPPSSAPGNGLGSGASGQQREPGEAAAEGAAEEARRMEQHWGFG 78
>Y563_LISMF (Q723B6) UPF0210 protein LMOf2365_0563| Length = 451 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = +3 Query: 183 VLSREYEHSKDDIFEFLLQCAEQLPHKIPFFGVLIGLINLENEDFAKGIVDATQA 347 V+ R E K + F+ + + +Q KI G L+G + E GIVD + A Sbjct: 222 VVKRAIEKVKGEPFDIVAETVKQTAFKITRMGQLVGQVASEKLGVPFGIVDLSLA 276
>Y538_LISIN (Q92EC2) UPF0210 protein lin0538| Length = 451 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = +3 Query: 183 VLSREYEHSKDDIFEFLLQCAEQLPHKIPFFGVLIGLINLENEDFAKGIVDATQA 347 V+ R E K + F+ + + +Q KI G L+G + E GIVD + A Sbjct: 222 VVKRAIEKVKGEPFDIVAETVKQTAFKITRMGQLVGQVASEKLGVPFGIVDLSLA 276
>Y534_LISMO (Q8Y9J3) UPF0210 protein lmo0534| Length = 451 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = +3 Query: 183 VLSREYEHSKDDIFEFLLQCAEQLPHKIPFFGVLIGLINLENEDFAKGIVDATQA 347 V+ R E K + F+ + + +Q KI G L+G + E GIVD + A Sbjct: 222 VVKRAIEKVKGEPFDIVAETVKQTAFKITRMGQLVGQVASEKLGVPFGIVDLSLA 276
>PYRG_OCEIH (Q8EM53) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP| synthetase) Length = 535 Score = 28.5 bits (62), Expect = 8.9 Identities = 12/31 (38%), Positives = 22/31 (70%) Frame = +3 Query: 258 HKIPFFGVLIGLINLENEDFAKGIVDATQAN 350 + IPFFG+ +G+ L + +FA+ +V +QA+ Sbjct: 373 NNIPFFGICLGM-QLASVEFARNVVGLSQAH 402
>HXC12_HUMAN (P31275) Homeobox protein Hox-C12 (Hox-3F)| Length = 282 Score = 28.5 bits (62), Expect = 8.9 Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 2/38 (5%) Frame = -1 Query: 128 APVADAKQQRPPASAHGGGGGQQRAE--RDAGCGQEAA 21 A V D K A GGGGG +R E RD G G AA Sbjct: 86 ARVEDGKGYYREPCAEGGGGGLKREERGRDPGAGPGAA 123
>SRC64_DROME (P00528) Tyrosine-protein kinase Src64B (EC 2.7.10.2) (Dsrc64)| Length = 552 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = +3 Query: 159 EHIEICYNVLSREYEHSKDDIFEFLLQCAEQLPHKIPFFGVL 284 E+IE + + + D+I++ LLQC + +P K P F L Sbjct: 491 ENIERGFRMPKPTNHYFPDNIYQLLLQCWDAVPEKRPTFEFL 532
>RAF1_RAT (P11345) RAF proto-oncogene serine/threonine-protein kinase (EC| 2.7.11.1) (Raf-1) (C-RAF) (cRaf) Length = 648 Score = 28.5 bits (62), Expect = 8.9 Identities = 16/64 (25%), Positives = 30/64 (46%) Frame = +3 Query: 186 LSREYEHSKDDIFEFLLQCAEQLPHKIPFFGVLIGLINLENEDFAKGIVDATQANLQDAL 365 LSR Y++ + + C +++ + P F ++ I L K A++ +L A Sbjct: 570 LSRLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLPKINRSASEPSLHRAA 629 Query: 366 HTEN 377 HTE+ Sbjct: 630 HTED 633
>RAF1_MOUSE (Q99N57) RAF proto-oncogene serine/threonine-protein kinase (EC| 2.7.11.1) (Raf-1) (C-RAF) (cRaf) Length = 648 Score = 28.5 bits (62), Expect = 8.9 Identities = 16/64 (25%), Positives = 30/64 (46%) Frame = +3 Query: 186 LSREYEHSKDDIFEFLLQCAEQLPHKIPFFGVLIGLINLENEDFAKGIVDATQANLQDAL 365 LSR Y++ + + C +++ + P F ++ I L K A++ +L A Sbjct: 570 LSRLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLPKINRSASEPSLHRAA 629 Query: 366 HTEN 377 HTE+ Sbjct: 630 HTED 633 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,509,579 Number of Sequences: 219361 Number of extensions: 1560063 Number of successful extensions: 6202 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 5833 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6189 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
