Clone Information

BLAST Search Result

Clone Name	bastl42h08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK102852.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	367	2e-98
2	gb\|AY017415.1\| Oryza sativa subsp. japonica nuclear cap-binding ...	361	1e-96
3	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	131	2e-27
4	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	131	2e-27
5	gb\|AC134231.2\| Oryza sativa (japonica cultivar-group) chromosome...	131	2e-27
6	gb\|AC149131.3\| Medicago truncatula chromosome 7 BAC clone mth2-1...	46	0.10
7	emb\|AL589679.14\| Mouse DNA sequence from clone RP23-189A16 on ch...	44	0.40
8	gb\|AC007063.6\| Arabidopsis thaliana chromosome 2 clone T10F5 map...	44	0.40
9	ref\|NM_004352.1\| Homo sapiens cerebellin 1 precursor (CBLN1), mRNA	42	1.6
10	gb\|AC164102.2\| Mus musculus BAC clone RP23-7E23 from chromosome ...	42	1.6
11	gb\|AC044798.7\| Homo sapiens chromosome 16 clone RP11-22D3, compl...	42	1.6
12	dbj\|AB226980.1\| Aspergillus oryzae cDNA, contig sequence: AoEST3842	42	1.6
13	dbj\|AP007157.1\| Aspergillus oryzae RIB40 genomic DNA, SC023	42	1.6
14	gb\|AC006233.4\| Arabidopsis thaliana chromosome 2 clone F12K2 map...	42	1.6
15	gb\|AC022542.5\| Homo sapiens chromosome 10 clone RP11-537G20, com...	42	1.6
16	gb\|AC007614.7\| Homo sapiens chromosome 16 clone RP11-491F9, comp...	42	1.6
17	gb\|AC005384.2\|AC005384 b326h7, complete sequence	42	1.6
18	gb\|AC134608.3\| Mus musculus BAC clone RP23-68H13 from 13, comple...	42	1.6
19	emb\|AL805923.6\| Mouse DNA sequence from clone RP23-65B16 on chro...	42	1.6
20	gb\|M58583.1\|HUMCERA Human precerebellin and cerebellin mRNA, com...	42	1.6
21	gb\|AC153357.4\| Mus musculus BAC clone RP24-124N8 from chromosome...	40	6.3
22	ref\|NM_126934.3\| Arabidopsis thaliana ABH1 (ABA HYPERSENSITIVE 1...	40	6.3
23	gb\|AE014835.1\| Plasmodium falciparum 3D7 chromosome 10 section 7...	40	6.3
24	gb\|AE001431.2\| Plasmodium falciparum 3D7 chromosome 2 section 68...	40	6.3
25	gb\|AC003676.1\| Homo sapiens chromosome 2, P1 clone 777H5 (LBNL H...	40	6.3
26	gb\|AC133609.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.3
27	gb\|AC116595.4\| Mus musculus BAC clone RP24-127G9 from chromosome...	40	6.3
28	gb\|AC141927.3\| Mus musculus BAC clone RP23-237F16 from chromosom...	40	6.3
29	ref\|XM_452943.1\| Kluyveromyces lactis NRRL Y-1140, KLLA0C16621g ...	40	6.3
30	gb\|AC004925.1\| Homo sapiens PAC clone RP5-907C10 from 7, complet...	40	6.3
31	gb\|AY095373.1\| Homo sapiens truncated CD36 antigen (collagen typ...	40	6.3
32	gb\|AC134335.2\| Mus musculus BAC clone RP24-150I18 from chromosom...	40	6.3
33	gb\|AC076968.38\| Homo sapiens 12 BAC RP11-686F15 (Roswell Park Ca...	40	6.3
34	gb\|AC121903.2\| Mus musculus BAC clone RP24-174G24 from 18, compl...	40	6.3
35	gb\|AC134924.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.3
36	ref\|XM_960912.1\| Plasmodium falciparum 3D7 hypothetical protein ...	40	6.3
37	emb\|AL021579.1\|HS598F2 Human DNA sequence from clone RP4-598F2 o...	40	6.3
38	emb\|AL627250.8\| Human DNA sequence from clone RP13-222H17 on chr...	40	6.3
39	emb\|AL078613.10\|HSA354I12 Human DNA sequence from clone RP11-354...	40	6.3
40	ref\|XM_965857.1\| PREDICTED: Tribolium castaneum similar to CG583...	40	6.3
41	gb\|BT000650.1\| Arabidopsis thaliana At2g13540/T10F5.8 mRNA, comp...	40	6.3
42	emb\|CR382398.1\| Plasmodium falciparum chromosome 6, complete seq...	40	6.3
43	emb\|CR382123.1\| Kluyveromyces lactis strain NRRL Y-1140 chromoso...	40	6.3
44	emb\|AL031745.8\|PFMAL1P2 Plasmodium falciparum DNA from MAL1P2	40	6.3
45	emb\|AL034559.4\|PFMAL3P7 Plasmodium falciparum MAL3P7, complete s...	40	6.3
46	dbj\|AK057690.1\| Homo sapiens cDNA FLJ33128 fis, clone TRACH20015...	40	6.3
47	gb\|AF268377.1\| Arabidopsis thaliana nuclear cap-binding protein ...	40	6.3
48	gb\|DQ401069.1\| Xenopus tropicalis leptin receptor (OB-Rb) gene, ...	40	6.3
49	gb\|AY064960.1\| Arabidopsis thaliana At2g13540/T10F5.8 mRNA, comp...	40	6.3
50	gb\|AC092015.2\| Homo sapiens chromosome 1 clone RP11-358L14, comp...	40	6.3
51	gb\|AC073850.4\| Homo sapiens BAC clone RP11-697H17 from 7, comple...	40	6.3
52	gb\|AF272891.1\|AF272891 Arabidopsis thaliana mRNA cap binding pro...	40	6.3
53	gb\|AC161938.2\| Mus musculus 6 BAC RP24-162E3 (Roswell Park Cance...	40	6.3
54	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.3
55	gb\|AC005798.10\|AC005798 Homo sapiens chromosome 4 clone RP11-442...	40	6.3
56	gb\|AC079895.7\| Homo sapiens BAC clone RP11-749M12 from 2, comple...	40	6.3
57	gb\|AC147097.3\| Pan troglodytes BAC clone RP43-51D4 from chromoso...	40	6.3
58	gb\|AC023423.5\|AC023423 Homo sapiens BAC clone RP11-430C23 from Y...	40	6.3
59	gb\|AC012531.11\|AC012531 Homo sapiens, clone RP11-83K1, complete ...	40	6.3
60	dbj\|AK108290.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	6.3
61	gb\|AC140381.3\| Mus musculus BAC clone RP23-176M4 from 10, comple...	40	6.3
62	gb\|AC113278.15\| Mus musculus chromosome 3, clone RP23-387I7, com...	40	6.3
63	dbj\|AP003305.2\| Homo sapiens genomic DNA, chromosome 11q clone:R...	40	6.3
64	gb\|DQ331932.1\| Synthetic construct Saccharomyces cerevisiae clon...	40	6.3
65	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.3
66	gb\|U20939.1\|YSCL9576 Saccharomyces cerevisiae chromosome XII cos...	40	6.3
67	gb\|AC157946.2\| Mus musculus BAC clone RP23-281H11 from chromosom...	40	6.3
68	emb\|AL683852.17\| Mouse DNA sequence from clone RP23-72B15 on chr...	40	6.3
69	emb\|AL606933.4\| Mouse DNA sequence from clone RP23-168M5 on chro...	40	6.3

>dbj|AK102852.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033110I07, full
           insert sequence
          Length = 2992

 Score =  367 bits (185), Expect = 2e-98
 Identities = 322/368 (87%)
 Strand = Plus / Plus

                                                                       
Query: 67  ccgccaccgccgccatgagcactggctggaggacgctgctgcttcgcatcggcgacaggt 126
           ||||| |||||||||||||| | |||||||||||||||||||| || |||||||||||||
Sbjct: 46  ccgccgccgccgccatgagcgcgggctggaggacgctgctgctgcggatcggcgacaggt 105

                                                                       
Query: 127 gccccgagtacgggggaacagccgaccacaaggagcacatcgaaatctgttacaatgtgc 186
           |||| |||||||||||  | |||||||||||||||||||||||||  |||||   |||||
Sbjct: 106 gcccggagtacgggggctccgccgaccacaaggagcacatcgaaacttgttatggtgtgc 165

                                                                       
Query: 187 tttctcgtgaatatgaacactccaaagatgatatttttgagtttctccttcagtgtgccg 246
           ||| ||| ||||| ||||||||||||||||  || |||||||||||||| || ||||| |
Sbjct: 166 tttgtcgagaatacgaacactccaaagatgcaatgtttgagtttctcctccaatgtgcag 225

                                                                       
Query: 247 aacaattacctcacaagattcctttctttggagttttgataggtttgataaatttagaaa 306
           | ||||| |||||||||||||||||||||||||| ||||||||||||||||| || ||||
Sbjct: 226 atcaattgcctcacaagattcctttctttggagtattgataggtttgataaacttggaaa 285

                                                                       
Query: 307 atgaagactttgccaagggtatcgtggatgcaacacaggctaacctacaggatgctttgc 366
           ||||||| ||| |||||||||| || ||| ||||||| || ||  |||||||||| ||||
Sbjct: 286 atgaagatttttccaagggtattgtcgatacaacacatgccaatttacaggatgccttgc 345

                                                                       
Query: 367 atactgaaaaccgtgataggatcaggatattgttacggtttctctgtggcctgatgtgca 426
           ||| |||||| ||||| || |||||||||||| | || ||||||||||||||||||||||
Sbjct: 346 ataatgaaaatcgtgacagaatcaggatattgctgcgatttctctgtggcctgatgtgca 405

                   
Query: 427 gcanagtt 434
           ||| ||||
Sbjct: 406 gcaaagtt 413

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>gb|AY017415.1| Oryza sativa subsp. japonica nuclear cap-binding protein CBP80
           mRNA, complete cds
          Length = 3009

 Score =  361 bits (182), Expect = 1e-96
 Identities = 321/368 (87%)
 Strand = Plus / Plus

                                                                       
Query: 67  ccgccaccgccgccatgagcactggctggaggacgctgctgcttcgcatcggcgacaggt 126
           ||||| |||||||||||||| | |||||||||||||||||||| || |||||||||||||
Sbjct: 62  ccgccgccgccgccatgagcgcgggctggaggacgctgctgctgcggatcggcgacaggt 121

                                                                       
Query: 127 gccccgagtacgggggaacagccgaccacaaggagcacatcgaaatctgttacaatgtgc 186
           |||| |||||||||||  | | |||||||||||||||||||||||  |||||   |||||
Sbjct: 122 gcccggagtacgggggctccgtcgaccacaaggagcacatcgaaacttgttatggtgtgc 181

                                                                       
Query: 187 tttctcgtgaatatgaacactccaaagatgatatttttgagtttctccttcagtgtgccg 246
           ||| ||| ||||| ||||||||||||||||  || |||||||||||||| || ||||| |
Sbjct: 182 tttgtcgagaatacgaacactccaaagatgcaatgtttgagtttctcctccaatgtgcag 241

                                                                       
Query: 247 aacaattacctcacaagattcctttctttggagttttgataggtttgataaatttagaaa 306
           | ||||| |||||||||||||||||||||||||| ||||||||||||||||| || ||||
Sbjct: 242 atcaattgcctcacaagattcctttctttggagtattgataggtttgataaacttggaaa 301

                                                                       
Query: 307 atgaagactttgccaagggtatcgtggatgcaacacaggctaacctacaggatgctttgc 366
           ||||||| ||| |||||||||| || ||| ||||||| || ||  |||||||||| ||||
Sbjct: 302 atgaagatttttccaagggtattgtcgatacaacacatgccaatttacaggatgccttgc 361

                                                                       
Query: 367 atactgaaaaccgtgataggatcaggatattgttacggtttctctgtggcctgatgtgca 426
           ||| |||||| ||||| || |||||||||||| | || ||||||||||||||||||||||
Sbjct: 362 ataatgaaaatcgtgacagaatcaggatattgctgcgntttctctgtggcctgatgtgca 421

                   
Query: 427 gcanagtt 434
           ||| ||||
Sbjct: 422 gcaaagtt 429

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  131 bits (66), Expect = 2e-27
 Identities = 93/102 (91%)
 Strand = Plus / Plus

                                                                            
Query: 67       ccgccaccgccgccatgagcactggctggaggacgctgctgcttcgcatcggcgacaggt 126
                ||||| |||||||||||||| | |||||||||||||||||||| || |||||||||||||
Sbjct: 12950655 ccgccgccgccgccatgagcgcgggctggaggacgctgctgctgcggatcggcgacaggt 12950714

                                                          
Query: 127      gccccgagtacgggggaacagccgaccacaaggagcacatcg 168
                |||| |||||||||||  | ||||||||||||||||||||||
Sbjct: 12950715 gcccggagtacgggggctccgccgaccacaaggagcacatcg 12950756



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                       
Query: 226      agtttctccttcagtgtgccgaacaattacctcacaagattcctttctttggagt 280
                |||||||||| || ||||| || ||||| ||||||||||||||||||||||||||
Sbjct: 12952294 agtttctcctccaatgtgcagatcaattgcctcacaagattcctttctttggagt 12952348



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                            
Query: 354      caggatgctttgcatactgaaaaccgtgataggatcaggatattgttacggtttctctgt 413
                |||||||| ||||||| |||||| ||||| || |||||||||||| | || |||||||||
Sbjct: 12953272 caggatgccttgcataatgaaaatcgtgacagaatcaggatattgctgcgatttctctgt 12953331

                      
Query: 414      ggcctg 419
                ||||||
Sbjct: 12953332 ggcctg 12953337



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 53/60 (88%)
 Strand = Plus / Plus

                                                                            
Query: 284      gataggtttgataaatttagaaaatgaagactttgccaagggtatcgtggatgcaacaca 343
                ||||||||||||||| || ||||||||||| ||| |||||||||| || ||| |||||||
Sbjct: 12953057 gataggtttgataaacttggaaaatgaagatttttccaagggtattgtcgatacaacaca 12953116



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                   
Query: 182      tgtgctttctcgtgaatatgaacactccaaagatg 216
                |||||||| ||| ||||| ||||||||||||||||
Sbjct: 12951656 tgtgctttgtcgagaatacgaacactccaaagatg 12951690

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  131 bits (66), Expect = 2e-27
 Identities = 93/102 (91%)
 Strand = Plus / Plus

                                                                            
Query: 67       ccgccaccgccgccatgagcactggctggaggacgctgctgcttcgcatcggcgacaggt 126
                ||||| |||||||||||||| | |||||||||||||||||||| || |||||||||||||
Sbjct: 12947430 ccgccgccgccgccatgagcgcgggctggaggacgctgctgctgcggatcggcgacaggt 12947489

                                                          
Query: 127      gccccgagtacgggggaacagccgaccacaaggagcacatcg 168
                |||| |||||||||||  | ||||||||||||||||||||||
Sbjct: 12947490 gcccggagtacgggggctccgccgaccacaaggagcacatcg 12947531



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                       
Query: 226      agtttctccttcagtgtgccgaacaattacctcacaagattcctttctttggagt 280
                |||||||||| || ||||| || ||||| ||||||||||||||||||||||||||
Sbjct: 12949069 agtttctcctccaatgtgcagatcaattgcctcacaagattcctttctttggagt 12949123



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                            
Query: 354      caggatgctttgcatactgaaaaccgtgataggatcaggatattgttacggtttctctgt 413
                |||||||| ||||||| |||||| ||||| || |||||||||||| | || |||||||||
Sbjct: 12950047 caggatgccttgcataatgaaaatcgtgacagaatcaggatattgctgcgatttctctgt 12950106

                      
Query: 414      ggcctg 419
                ||||||
Sbjct: 12950107 ggcctg 12950112



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 53/60 (88%)
 Strand = Plus / Plus

                                                                            
Query: 284      gataggtttgataaatttagaaaatgaagactttgccaagggtatcgtggatgcaacaca 343
                ||||||||||||||| || ||||||||||| ||| |||||||||| || ||| |||||||
Sbjct: 12949832 gataggtttgataaacttggaaaatgaagatttttccaagggtattgtcgatacaacaca 12949891



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                   
Query: 182      tgtgctttctcgtgaatatgaacactccaaagatg 216
                |||||||| ||| ||||| ||||||||||||||||
Sbjct: 12948431 tgtgctttgtcgagaatacgaacactccaaagatg 12948465

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>gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0006D11, complete sequence
          Length = 176637

 Score =  131 bits (66), Expect = 2e-27
 Identities = 93/102 (91%)
 Strand = Plus / Plus

                                                                         
Query: 67    ccgccaccgccgccatgagcactggctggaggacgctgctgcttcgcatcggcgacaggt 126
             ||||| |||||||||||||| | |||||||||||||||||||| || |||||||||||||
Sbjct: 28353 ccgccgccgccgccatgagcgcgggctggaggacgctgctgctgcggatcggcgacaggt 28412

                                                       
Query: 127   gccccgagtacgggggaacagccgaccacaaggagcacatcg 168
             |||| |||||||||||  | ||||||||||||||||||||||
Sbjct: 28413 gcccggagtacgggggctccgccgaccacaaggagcacatcg 28454



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                    
Query: 226   agtttctccttcagtgtgccgaacaattacctcacaagattcctttctttggagt 280
             |||||||||| || ||||| || ||||| ||||||||||||||||||||||||||
Sbjct: 29992 agtttctcctccaatgtgcagatcaattgcctcacaagattcctttctttggagt 30046



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                         
Query: 354   caggatgctttgcatactgaaaaccgtgataggatcaggatattgttacggtttctctgt 413
             |||||||| ||||||| |||||| ||||| || |||||||||||| | || |||||||||
Sbjct: 30970 caggatgccttgcataatgaaaatcgtgacagaatcaggatattgctgcgatttctctgt 31029

                   
Query: 414   ggcctg 419
             ||||||
Sbjct: 31030 ggcctg 31035



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 53/60 (88%)
 Strand = Plus / Plus

                                                                         
Query: 284   gataggtttgataaatttagaaaatgaagactttgccaagggtatcgtggatgcaacaca 343
             ||||||||||||||| || ||||||||||| ||| |||||||||| || ||| |||||||
Sbjct: 30755 gataggtttgataaacttggaaaatgaagatttttccaagggtattgtcgatacaacaca 30814



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 182   tgtgctttctcgtgaatatgaacactccaaagatg 216
             |||||||| ||| ||||| ||||||||||||||||
Sbjct: 29354 tgtgctttgtcgagaatacgaacactccaaagatg 29388

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>gb|AC149131.3| Medicago truncatula chromosome 7 BAC clone mth2-19e15, complete
             sequence
          Length = 122492

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                    
Query: 240   tgtgccgaacaattacctcacaagattcctttctttgga 278
             ||||| || ||||| ||||||||||||||||||| ||||
Sbjct: 37283 tgtgctgagcaattgcctcacaagattcctttctatgga 37321

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>emb|AL589679.14| Mouse DNA sequence from clone RP23-189A16 on chromosome 13 Contains the
              3' end of the Csh1 gene for chorionic somatomammotropin
              hormone 1,  two genes for novel proteins similar to
              chorionic somatomammotropin hormone 1 (Csh1), the Prlpi
              gene for prolactin-like protein I (Prlpj, decidualin), the
              Csh2 gene for chorionic somatomammotropin hormone 2, the
              gene for protein 1600016E11RIK similar to prolactin and a
              novel gene (4930511O05Rik), complete sequence
          Length = 207737

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 213    gatgatatttttgagtttctcc 234
              ||||||||||||||||||||||
Sbjct: 140191 gatgatatttttgagtttctcc 140170

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>gb|AC007063.6| Arabidopsis thaliana chromosome 2 clone T10F5 map PR1, complete
             sequence
          Length = 102585

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                           
Query: 226   agtttctccttcagtgtgccgaacaattacctcacaagattccttt 271
             ||||||| || || ||||| |||||||| ||||| |||||||||||
Sbjct: 27805 agtttctactacaatgtgctgaacaattgcctcataagattccttt 27850

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>ref|NM_004352.1| Homo sapiens cerebellin 1 precursor (CBLN1), mRNA
          Length = 1524

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 22 gccgcctcctgcccgcacccg 42
          |||||||||||||||||||||
Sbjct: 31 gccgcctcctgcccgcacccg 11

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>gb|AC164102.2| Mus musculus BAC clone RP23-7E23 from chromosome 13, complete sequence
          Length = 234552

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 350   cctacaggatgctttgcatac 370
             |||||||||||||||||||||
Sbjct: 12517 cctacaggatgctttgcatac 12497

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>gb|AC044798.7| Homo sapiens chromosome 16 clone RP11-22D3, complete sequence
          Length = 165651

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 22   gccgcctcctgcccgcacccg 42
            |||||||||||||||||||||
Sbjct: 9092 gccgcctcctgcccgcacccg 9072

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>dbj|AB226980.1| Aspergillus oryzae cDNA, contig sequence: AoEST3842
          Length = 485

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 200 tgaacactccaaagatgatat 220
           |||||||||||||||||||||
Sbjct: 120 tgaacactccaaagatgatat 100

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>dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023
          Length = 2661830

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 200    tgaacactccaaagatgatat 220
              |||||||||||||||||||||
Sbjct: 141271 tgaacactccaaagatgatat 141291

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>gb|AC006233.4| Arabidopsis thaliana chromosome 2 clone F12K2 map B68, complete
             sequence
          Length = 88383

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 290   tttgataaatttagaaaatga 310
             |||||||||||||||||||||
Sbjct: 71384 tttgataaatttagaaaatga 71364

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>gb|AC022542.5| Homo sapiens chromosome 10 clone RP11-537G20, complete sequence
          Length = 185857

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 219    atttttgagtttctccttcag 239
              |||||||||||||||||||||
Sbjct: 142577 atttttgagtttctccttcag 142597

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>gb|AC007614.7| Homo sapiens chromosome 16 clone RP11-491F9, complete sequence
          Length = 192347

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 22     gccgcctcctgcccgcacccg 42
              |||||||||||||||||||||
Sbjct: 150026 gccgcctcctgcccgcacccg 150006

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>gb|AC005384.2|AC005384 b326h7, complete sequence
          Length = 178292

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 219    atttttgagtttctccttcag 239
              |||||||||||||||||||||
Sbjct: 106216 atttttgagtttctccttcag 106196

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>gb|AC134608.3| Mus musculus BAC clone RP23-68H13 from 13, complete sequence
          Length = 253539

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 350    cctacaggatgctttgcatac 370
              |||||||||||||||||||||
Sbjct: 186964 cctacaggatgctttgcatac 186944

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>emb|AL805923.6| Mouse DNA sequence from clone RP23-65B16 on chromosome 4, complete
              sequence
          Length = 182774

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 169    aaatctgttacaatgtgcttt 189
              |||||||||||||||||||||
Sbjct: 121763 aaatctgttacaatgtgcttt 121743

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>gb|M58583.1|HUMCERA Human precerebellin and cerebellin mRNA, complete cds
          Length = 1524

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 22 gccgcctcctgcccgcacccg 42
          |||||||||||||||||||||
Sbjct: 31 gccgcctcctgcccgcacccg 11

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>gb|AC153357.4| Mus musculus BAC clone RP24-124N8 from chromosome 10, complete sequence
          Length = 189789

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 261   aagattcctttctttggagttttg 284
             ||||||||| ||||||||||||||
Sbjct: 93121 aagattcctgtctttggagttttg 93098

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>ref|NM_126934.3| Arabidopsis thaliana ABH1 (ABA HYPERSENSITIVE 1) AT2G13540 (ABH1)
           mRNA, complete cds
          Length = 2860

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 240 tgtgccgaacaattacctcacaagattccttt 271
           ||||| |||||||| ||||| |||||||||||
Sbjct: 326 tgtgctgaacaattgcctcataagattccttt 357

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>gb|AE014835.1| Plasmodium falciparum 3D7 chromosome 10 section 7 of 7 of the complete
             sequence
          Length = 180450

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 294   ataaatttagaaaatgaagacttt 317
             ||||| ||||||||||||||||||
Sbjct: 83253 ataaaattagaaaatgaagacttt 83230

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>gb|AE001431.2| Plasmodium falciparum 3D7 chromosome 2 section 68 of 73 of the
            complete sequence
          Length = 11929

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 294  ataaatttagaaaatgaagacttt 317
            ||||| ||||||||||||||||||
Sbjct: 2967 ataaaattagaaaatgaagacttt 2944

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>gb|AC003676.1| Homo sapiens chromosome 2, P1 clone 777H5 (LBNL H27), complete sequence
          Length = 86894

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 285   ataggtttgataaatttagaaaat 308
             |||||||| |||||||||||||||
Sbjct: 16327 ataggtttaataaatttagaaaat 16350

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>gb|AC133609.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0002C14, complete sequence
          Length = 154029

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 67     ccgccaccgccgccatgagc 86
              ||||||||||||||||||||
Sbjct: 152328 ccgccaccgccgccatgagc 152347

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>gb|AC116595.4| Mus musculus BAC clone RP24-127G9 from chromosome 18, complete sequence
          Length = 158788

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 265    ttcctttctttggagttttg 284
              ||||||||||||||||||||
Sbjct: 131839 ttcctttctttggagttttg 131858

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>gb|AC141927.3| Mus musculus BAC clone RP23-237F16 from chromosome 6, complete sequence
          Length = 186452

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   tgaacactccaaagatgata 219
             ||||||||||||||||||||
Sbjct: 52440 tgaacactccaaagatgata 52459

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>ref|XM_452943.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C16621g predicted mRNA
          Length = 921

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 80  catgagcactggctggagga 99
           ||||||||||||||||||||
Sbjct: 802 catgagcactggctggagga 783

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>gb|AC004925.1| Homo sapiens PAC clone RP5-907C10 from 7, complete sequence
          Length = 154959

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 42     ggcatctctctctgctctct 61
              ||||||||||||||||||||
Sbjct: 113368 ggcatctctctctgctctct 113349

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>gb|AY095373.1| Homo sapiens truncated CD36 antigen (collagen type I receptor,
             thrombospondin receptor) (CD36) gene, complete cds
          Length = 30180

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 303   gaaaatgaagactttgccaa 322
             ||||||||||||||||||||
Sbjct: 18996 gaaaatgaagactttgccaa 19015

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>gb|AC134335.2| Mus musculus BAC clone RP24-150I18 from chromosome 15, complete sequence
          Length = 166926

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 194    tgaatatgaacactccaaagatga 217
              |||| |||||||||||||||||||
Sbjct: 124981 tgaaaatgaacactccaaagatga 125004

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>gb|AC076968.38| Homo sapiens 12 BAC RP11-686F15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 203038

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 298    atttagaaaatgaagacttt 317
              ||||||||||||||||||||
Sbjct: 171514 atttagaaaatgaagacttt 171495

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>gb|AC121903.2| Mus musculus BAC clone RP24-174G24 from 18, complete sequence
          Length = 172114

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 265   ttcctttctttggagttttg 284
             ||||||||||||||||||||
Sbjct: 42143 ttcctttctttggagttttg 42162

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>gb|AC134924.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBb0076M06, complete sequence
          Length = 133581

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    ccgccaccgccgccatgagc 86
             ||||||||||||||||||||
Sbjct: 50088 ccgccaccgccgccatgagc 50107

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>ref|XM_960912.1| Plasmodium falciparum 3D7 hypothetical protein (PFF0065c) partial
           mRNA
          Length = 849

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 294 ataaatttagaaaatgaagacttt 317
           ||||| ||||||||||||||||||
Sbjct: 314 ataaaattagaaaatgaagacttt 291

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>emb|AL021579.1|HS598F2 Human DNA sequence from clone RP4-598F2 on chromosome 1q23.1-24.3
             Contains part of the gene for HBxAg transactivated protein
             2 (XTP2), complete sequence
          Length = 99886

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 297   aatttagaaaatgaagactt 316
             ||||||||||||||||||||
Sbjct: 87912 aatttagaaaatgaagactt 87931

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>emb|AL627250.8| Human DNA sequence from clone RP13-222H17 on chromosome X Contains a
              novel pseudogene, complete sequence
          Length = 177796

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 287    aggtttgataaatttagaaa 306
              ||||||||||||||||||||
Sbjct: 121520 aggtttgataaatttagaaa 121501

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>emb|AL078613.10|HSA354I12 Human DNA sequence from clone RP11-354I12 on chromosome 22 Contains
            an STS and GSSs, complete sequence
          Length = 60837

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 46   tctctctctgctctctgttg 65
            ||||||||||||||||||||
Sbjct: 6826 tctctctctgctctctgttg 6845

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>ref|XM_965857.1| PREDICTED: Tribolium castaneum similar to CG5836-PA (LOC659564), mRNA
          Length = 1850

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 62   gttgtccgccaccgccgcca 81
            ||||||||||||||||||||
Sbjct: 1658 gttgtccgccaccgccgcca 1677

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>gb|BT000650.1| Arabidopsis thaliana At2g13540/T10F5.8 mRNA, complete cds
          Length = 2547

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 240 tgtgccgaacaattacctcacaagattccttt 271
           ||||| |||||||| ||||| |||||||||||
Sbjct: 157 tgtgctgaacaattgcctcataagattccttt 188

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>emb|CR382398.1| Plasmodium falciparum chromosome 6, complete sequence; segment 1/5
          Length = 349418

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 294   ataaatttagaaaatgaagacttt 317
             ||||| ||||||||||||||||||
Sbjct: 49406 ataaaattagaaaatgaagacttt 49429

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>emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome C of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 1753957

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 80      catgagcactggctggagga 99
               ||||||||||||||||||||
Sbjct: 1457204 catgagcactggctggagga 1457185

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>emb|AL031745.8|PFMAL1P2 Plasmodium falciparum DNA from MAL1P2
          Length = 384550

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 294   ataaatttagaaaatgaagacttt 317
             ||||| ||||||||||||||||||
Sbjct: 10287 ataaaattagaaaatgaagacttt 10310

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>emb|AL034559.4|PFMAL3P7 Plasmodium falciparum MAL3P7, complete sequence
          Length = 253305

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 294    ataaatttagaaaatgaagacttt 317
              ||||| ||||||||||||||||||
Sbjct: 196153 ataaaattagaaaatgaagacttt 196130

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>dbj|AK057690.1| Homo sapiens cDNA FLJ33128 fis, clone TRACH2001596, weakly similar to
            H.sapiens of CD36 gene
          Length = 3224

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 303  gaaaatgaagactttgccaa 322
            ||||||||||||||||||||
Sbjct: 2987 gaaaatgaagactttgccaa 3006

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>gb|AF268377.1| Arabidopsis thaliana nuclear cap-binding protein CBP80 mRNA,
           complete cds
          Length = 2834

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 240 tgtgccgaacaattacctcacaagattccttt 271
           ||||| |||||||| ||||| |||||||||||
Sbjct: 326 tgtgctgaacaattgcctcataagattccttt 357

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>gb|DQ401069.1| Xenopus tropicalis leptin receptor (OB-Rb) gene, complete cds
          Length = 4391

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 170  aatctgttacaatgtgcttt 189
            ||||||||||||||||||||
Sbjct: 1292 aatctgttacaatgtgcttt 1273

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>gb|AY064960.1| Arabidopsis thaliana At2g13540/T10F5.8 mRNA, complete cds
          Length = 2735

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 240 tgtgccgaacaattacctcacaagattccttt 271
           ||||| |||||||| ||||| |||||||||||
Sbjct: 227 tgtgctgaacaattgcctcataagattccttt 258

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>gb|AC092015.2| Homo sapiens chromosome 1 clone RP11-358L14, complete sequence
          Length = 161815

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    tctctctctgctctctgttg 65
             ||||||||||||||||||||
Sbjct: 51869 tctctctctgctctctgttg 51888

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>gb|AC073850.4| Homo sapiens BAC clone RP11-697H17 from 7, complete sequence
          Length = 183846

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 303   gaaaatgaagactttgccaa 322
             ||||||||||||||||||||
Sbjct: 23950 gaaaatgaagactttgccaa 23969

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>gb|AF272891.1|AF272891 Arabidopsis thaliana mRNA cap binding protein mRNA, complete cds
          Length = 2716

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 240 tgtgccgaacaattacctcacaagattccttt 271
           ||||| |||||||| ||||| |||||||||||
Sbjct: 193 tgtgctgaacaattgcctcataagattccttt 224

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>gb|AC161938.2| Mus musculus 6 BAC RP24-162E3 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 163330

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 200   tgaacactccaaagatgata 219
             ||||||||||||||||||||
Sbjct: 64331 tgaacactccaaagatgata 64312

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 67       ccgccaccgccgccatgagc 86
                ||||||||||||||||||||
Sbjct: 26248439 ccgccaccgccgccatgagc 26248458

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>gb|AC005798.10|AC005798 Homo sapiens chromosome 4 clone RP11-442P12, complete sequence
          Length = 206631

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    atctctctctgctctctgtt 64
             ||||||||||||||||||||
Sbjct: 56232 atctctctctgctctctgtt 56251

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>gb|AC079895.7| Homo sapiens BAC clone RP11-749M12 from 2, complete sequence
          Length = 149309

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 285   ataggtttgataaatttagaaaat 308
             |||||||| |||||||||||||||
Sbjct: 90584 ataggtttaataaatttagaaaat 90561

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>gb|AC147097.3| Pan troglodytes BAC clone RP43-51D4 from chromosome 7, complete
             sequence
          Length = 192069

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 303   gaaaatgaagactttgccaa 322
             ||||||||||||||||||||
Sbjct: 52188 gaaaatgaagactttgccaa 52207

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>gb|AC023423.5|AC023423 Homo sapiens BAC clone RP11-430C23 from Y, complete sequence
          Length = 88016

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 287  aggtttgataaatttagaaa 306
            ||||||||||||||||||||
Sbjct: 1978 aggtttgataaatttagaaa 1959

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>gb|AC012531.11|AC012531 Homo sapiens, clone RP11-83K1, complete sequence
          Length = 171949

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 298  atttagaaaatgaagacttt 317
            ||||||||||||||||||||
Sbjct: 9233 atttagaaaatgaagacttt 9214

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>dbj|AK108290.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-D12, full
           insert sequence
          Length = 869

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 67  ccgccaccgccgccatgagc 86
           ||||||||||||||||||||
Sbjct: 305 ccgccaccgccgccatgagc 324

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>gb|AC140381.3| Mus musculus BAC clone RP23-176M4 from 10, complete sequence
          Length = 223470

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 261   aagattcctttctttggagttttg 284
             ||||||||| ||||||||||||||
Sbjct: 30346 aagattcctgtctttggagttttg 30323

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>gb|AC113278.15| Mus musculus chromosome 3, clone RP23-387I7, complete sequence
          Length = 180681

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 194    tgaatatgaacactccaaagatga 217
              |||| |||||||||||||||||||
Sbjct: 100205 tgaaaatgaacactccaaagatga 100228

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>dbj|AP003305.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-667E8, complete
              sequence
          Length = 134764

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 289    gtttgataaatttagaaaat 308
              ||||||||||||||||||||
Sbjct: 123711 gtttgataaatttagaaaat 123692

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>gb|DQ331932.1| Synthetic construct Saccharomyces cerevisiae clone FLH147894.01X TUS1
            gene, complete sequence
          Length = 3924

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 217  atatttttgagtttctcctt 236
            ||||||||||||||||||||
Sbjct: 2274 atatttttgagtttctcctt 2255

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 67       ccgccaccgccgccatgagc 86
                ||||||||||||||||||||
Sbjct: 26562697 ccgccaccgccgccatgagc 26562716

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>gb|U20939.1|YSCL9576 Saccharomyces cerevisiae chromosome XII cosmid 9576
          Length = 35805

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   atatttttgagtttctcctt 236
             ||||||||||||||||||||
Sbjct: 20617 atatttttgagtttctcctt 20598

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>gb|AC157946.2| Mus musculus BAC clone RP23-281H11 from chromosome 15, complete sequence
          Length = 190752

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 194    tgaatatgaacactccaaagatga 217
              |||| |||||||||||||||||||
Sbjct: 190486 tgaaaatgaacactccaaagatga 190509

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>emb|AL683852.17| Mouse DNA sequence from clone RP23-72B15 on chromosome X, complete
             sequence
          Length = 200665

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    cctcctgcccgcacccggca 45
             ||||||||||||||||||||
Sbjct: 32373 cctcctgcccgcacccggca 32392

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>emb|AL606933.4| Mouse DNA sequence from clone RP23-168M5 on chromosome 4, complete
              sequence
          Length = 197552

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 37     cacccggcatctctctctgctctc 60
              ||||| ||||||||||||||||||
Sbjct: 162333 cacccagcatctctctctgctctc 162310


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,744,804
Number of Sequences: 3902068
Number of extensions: 4744804
Number of successful extensions: 140089
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 139761
Number of HSP's gapped (non-prelim): 328
length of query: 464
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 442
effective length of database: 17,147,199,772
effective search space: 7579062299224
effective search space used: 7579062299224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result